US20050159585A1
2005-07-21
11/076,861
2005-03-11
Process for the preparation of stable activated derivatives of carbamic acid, comprising at least one protected amino group and an activated carbamic acid function, from an amino acid derivative in which the amino group is protected. The process includes: a) a step of transformation of the —COOH group of the amino acid derivative into a —CON3 group to obtain an acyl azide; b) a step of transformation of the —CON3 group of the acyl azide into a —NCO group to obtain an isocyanate; c) a step of treating the isocyanate to obtain a stable derivative of carbamic acid.
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C07D207/404 » CPC main
Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having two double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms; Oxygen or sulfur atoms 2,5-Pyrrolidine-diones with only hydrogen atoms or radicals containing only hydrogen and carbon atoms directly attached to other ring carbon atoms, e.g. succinimide
A61P31/18 » CPC further
Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics; Antivirals for RNA viruses for HIV
A61P37/02 » CPC further
Drugs for immunological or allergic disorders Immunomodulators
A61P43/00 » CPC further
Drugs for specific purposes, not provided for in groups -
C07C275/14 » CPC further
Derivatives of urea, i.e. compounds containing any of the groups , the nitrogen atoms not being part of nitro or nitroso groups having nitrogen atoms of urea groups bound to acyclic carbon atoms of an acyclic and saturated carbon skeleton being further substituted by nitrogen atoms not being part of nitro or nitroso groups
C08G71/02 » CPC further
Macromolecular compounds obtained by reactions forming a ureide or urethane link, otherwise, than from isocyanate radicals in the main chain of the macromolecule Polyureas
This is a continuation of co-pending international application PCT/FR00/00080, filed on 14 Jan. 2000, which designates the United States of America.
The invention has for its object new stable activated derivatives of carbamic acid, particularly new stable activated carbamates, their process of preparation and their use for the preparation of urea.
The synthesis and applications of substituted ureas has for several years undergone great development. These compounds are present in a certain number of active principles now under development in the pharmaceutical industry as protease inhibitors of VIH, antagonists of the CCK-B receptor, or antagonists of endothelin 1. Moreover, the oligoureas have been introduced as “scaffolds” for the creation of β-sheets 2 or as mimics of the peptide skeleton 3. The methods of formation of substituted ureas rely on the reaction of amines with carbonylation agents 4, with isocyanates 5 or with carbamates 6.
In the field of research looking toward the development of new compounds with immunomodulatory activity, there is needed a simple method, not requiring the use of phosgene or of one of its derivatives, to produce easily peptidic analogs containing ureas or urea oligomers. In 1995, the Burgess group described for the first time the synthesis in solid phase of oligoureas. This was based on the use of isocyanate synthons derived from N-protected mono-phthalimide diamines. This strategy requires the preparation of protected mono-phthalimide diamines precursors and uses triphosgene as the carbonylation agent to obtain the corresponding isocyanate 3a,3b. In a similar approach, the Schultz group used azido 4-nitrophenyl carbamates as pre-activated synthons 3c,3d. More recently, 4-nitrophenyl carbamates obtained by the reaction of Boc-protected N-substituted ethylenediamines with 4-nitrophenyl chloroformate have been described as synthons for the synthesis of urea-peptoids by the Liskamp group 3e. In short, there does not exist at present an easy synthesis route for activated monomers obtained from amino acids protected or not by an Fmoc, Boc or Z group, avoiding the use of phosgene (or its derivatives) and permitting the synthesis of urea oligomers as well as the easy incorporation of urea patterns in peptides. The activated carbamates are generally prepared by the reaction of amines with carbonates 4c or chloroformates 3e,6b, or by reaction of isocyanates with alcohols 6a.
One of the aspects of the invention is to provide novel stable activated derivatives of carbamic acid, in particular novel stable activated carbamates.
One of the other aspects of the invention is to provide novel isocyanates.
One of the other aspects of the invention is to provide a novel process for the preparation of urea, cyclic or not.
One of the other aspects of the invention is to provide novel ureas, cyclic or not.
Generally speaking, the invention has for its object the use of isocyanates obtained from amino acid derivatives for the preparation and if desired the isolation of stable activated derivatives of carbamic acid or of stable activated carbamates.
According to a preferred embodiment, the invention relates to the use of isocyanates, of stable activated derivatives of carbamic acid, or of stable activated carbamates defined above, for the preparation of substituted ureas, cyclic or not, particularly of oligomers of ureas, cyclic or not, or for the preparation of peptides or pseudo-peptides containing urea designs, cyclic or not.
By “amino acid derivatives”, is meant amino acids (alpha, beta, gamma, delta-aminated, or the like) whose primary or secondary amine function can be protected by a group selected to give a tertiary amine function, urethane, amide, urea, nitro or phthalimide.
Within the meaning of the invention, the term “amino acid derivatives” should be interpreted in its broad sense, as understood by those in the art, and designates particularly a derivative of peptide, polypeptide, protein, pseudopeptide or oligourea.
By “activated carbamate” or “activated derivative of carbamic acid”, is meant a carbamate or a carbamic acid derivative capable of reacting with primary or secondary amines or with alcohols in the presence of not of a base in an organic solvent and generally at ambient temperature.
By “stable carbamate” or “stable carbamic acid derivative”, is meant a stable carbamate or a stable derivative of carbamic acid because it is isolable, purifiable and can be stored (preferably at 4° C.) for a period of at least 3 months without noticeable degradation. The stability can be measured for example by the following test: HPLC or thin layer chromatography.
By “isolation” is meant the process of separation of the desired product from all of the impurities present in the reaction mixture (the latter can be for example: an excess of one of the reagents used to carry out the reaction, symmetrical urea, the amine obtained by the rearrangement of isocyanate in the presence of water) and the recovery of the thus-purified product in a form permitting it to be stored (preferably at 4° C.) for a long period (several months, at least 3 months) without noticeable decomposition.
The expression “urea oligomers” means a successive chain of motifs interconnected by urea linkages (at least two).
The invention particularly has for its object a process for the production of stable activated derivatives of carbamic acid, from an amino acid derivative in which the amino group is protected, comprising:
According to a preferred embodiment of the process of the invention, step a) for the transformation of the —COOH group into the —CON3 group, is carried out by a treatment, with the nitride anion, of an activated derivative of the amino acid in which the amino group is protected.
By way of example, the nitride anion could be used in the form of sodium azide.
Thus, step a) of transformation of the —COOH group into the —CON3 group could be carried by treatment of the mixed anhydride (formed from the amino acid derivative) with sodium azide.
Generally speaking, any method known to those skilled in the art permitting obtaining an azide from an acid can be used, and particularly those described in the encyclopedia of Houben-Weyl, “Methoden der organischen Chemie”.
According to another preferred embodiment of the process of the invention, step a) for transformation of the —COOH group into the —CON3 group is carried out by the treatment, with hydrazine, of an activated amino acid derivative in which the amino group is protected, to obtain a hydrazide, which is then subjected to conversion to a nitrite.
By “activated derivative of amino acid” is meant for example an acid ester or an acid halide, such as an acid chloride.
By way of example, carboxylic acid is first converted to an active derivative (ester, chloride etc . . . ) that the action of hydrazine transforms into a hydrazide, which is then transformed into the desired acyl azide, by the action of nitrous acid.
According to another preferred embodiment of the invention, the transformation of the —COOH group into the —NCO group can be carried out by the method using unsymmetrical disubstituted dimethylhydrazine (“UDMH”), according to the synthesis reaction indicated below by way of example:
The invention also has for its object compounds according to the formula (I):
The first bond b1 and the last bn+1 each connected to a nitrogen atom, are always single bonds: *b1 and bn+1 are always single bonds (s).
If a bi bond is double, this implies that the adjacent bonds bi−1, bi+1, ai and ai+1 are single bonds and that the bonds a′i and a′i+1 do not exist:
If a bi bond is triple, this implies that the adjacent bonds bi−1, bi+1 are single bonds and that the bonds ai, a′i, ai+1 and a′i+1 do not exist:
If an ai bond is double, this means that the adjacent bonds bi−1 and bi are single bonds and that the bond a′i does not exist.
The symbol Ø corresponds to the absence of the bond to which it relates.
The expression “certain of the bonds could also be part of aromatic rings, substituted or not” can be explained in the following manner. These cases can occur:
If there is cyclization between R1, Ri and R′i, they can be illustrated in the following manner:
In all the formulas indicated above and hereafter, when GP=RCO or ROCO, R preferably represents a hydrocarbon chain.
In all the formulas indicated above and hereinbelow, when GP=ROCO, GP forms with the nitrogen atom to which it is contiguous a urethane group.
In all the formulas indicated hereafter, when A=ROCO, A forms with the nitrogen atom to which it is contiguous a urethane group.
The invention also relates to compounds of the formula (III)
As an example of a pseudopeptide entering into the definition of Y, can be cited:
The invention also has for its object compounds of formula (III bis)
The invention also has for its object compounds of the formula (I bis)
A preferred group of compounds of formula (III bis) is constituted by those in which 1≦n≦4, X is as defined above in connection with formula (III bis) and is particularly from p-nitrophenol, N-hydroxysuccinimide, pentafluorophenol, hydroxy-1,2,3-benzotriazole or imidazole, A is an oxycarbonyl or acyl group as defined above in connection with formula (III bis),
A preferred group of compounds of formula (I bis) is constituted by those in which 1≦n≦4, X is as defined above with respect to formula (III bis) and is particularly from p-nitrophenol, N-hydroxysuccinimide, pentafluorophenol, hydroxy-1,2,3-benzotriazole or imidazole, GP is an oxycarbonyl or acyl group as defined above in connection with formula (III bis),
The compounds of formulas (III) and (III bis) are activated carbamates analogous to the compounds of formulas (I) and (I bis) in which the protective group is replaced for example by an amino acid chain, a pseudopeptide, or an oligomer of urea. They can be obtained from corresponding isocyanates of formula (IV) defined hereafter.
The compounds of formulas (I) and (I bis) are activated carbamates derived from N-protected amino acids of formula IX defined hereafter and which can be obtained from isocyanates of formula (II) defined hereafter.
The invention also relates to compounds of formula (IV)
The invention also has for its object compounds of the formula (II)
A group of preferred compounds of formula (IV) are those in which 1≦n≦4, A is an oxycarbonyl or acyl group as defined above in connection with formula (IV),
A preferred group of compounds of formula (II) are those in which 1≦n≦4, GP is an oxycarbonyl or acyl group as defined above with respect to formula (IV), and particularly the following compounds, in particular those in which GP=Boc and Fmoc,
The isocyanates of formula (IV) can be used as precursors for the synthesis of the compounds of formula (III) and (III bis) and can be obtained from compounds of the formula (X) defined hereinafter.
The isocyanates of formula (II) are the precursors used in the synthesis of compounds of formulas (I) and (I bis) and can be obtained from N-protected amino acid derivatives of formula (IX) defined hereafter.
The invention also relates to compounds of the formula (V)
The compounds of formula (V) are activated carbamates analogous to compounds of formulas (I) and (I bis) in which the activated carbamate is introduced into the side chain of a protective amino acid or a peptide, a pseudopeptide or else an oligomer of urea.
The invention also relates to compounds of formula (Vbis)
The isocyanates of formula (Vbis) can be used as precursors for the synthesis of compounds of formula (V) and can be obtained from compounds (XI).
The invention also comprises compounds of the formula (VII)
In formula (VII), when B represents N—W′, N corresponds to the nitrogen atom, and when B represents O, O corresponds to the oxygen atom.
The compounds of type (VII) are reaction products of compounds of type (III) and (III bis) or possibly (IV) with derivatives containing a primary or secondary amine or an alcohol.
The invention also relates to compounds of formula (VI)
Compounds of type (VI) are reaction products of the compounds of type (I) and (I bis) or possibly (II) with derivatives containing a primary or secondary amine or an alcohol.
A preferred group of compounds of formula (VII) is constituted by those in which 1≦n≦4, and particularly the following compounds in which v, h, m and p are comprised from 1 to 10 and preferably 1 to 5 and more particularly the following compounds:
A preferred group of compounds is constituted by those of formula (VI) in which 1≦n≦4, GP is an oxycarbonyl or acyl group as defined above with respect to the compounds of formula (VI), and more particularly the following compounds in which v and h are comprised between 1 and 10, and preferably equal to 1 or 2, and particularly those in which GP=Boc and Fmoc:
The invention also relates to compounds of the formula (VIII)
A preferred group of compounds of formula (VIII) is constituted by those in which 1≦n≦4, and particularly the following compounds in which h, v, t, p, m, and q are comprised from 1 to 10 and preferably 1 to 5, and more particularly the following compounds:
The invention also has for its object cyclic compounds of formula (VIII bis)
The compounds of the (VIII) and (VIII bis) type are cyclic compounds obtained from compounds of the (III) and (III bis) or (IV) type and by intramolecular reaction with an amine liberated after elimination of temporary protection.
The compounds of type (VIII) and (VIII bis) are cyclic compounds obtained from compounds of type (III) and (III bis) or (IV) and by intramolecular reaction with an amine freed after elimination of temporary protection.
In the compounds of formula (I), (I bis), (III), (IIIbis), (IV), (V), (Vbis), (VI) and (VII), the aryl group is preferably selected from:
According to a preferred embodiment of the process of the invention, the preparation of the compounds of formula (I bis), (II), (III bis), (IV), (V) or (Vbis) can be carried out from respectively:
According to a preferred embodiment of the process of preparation of the invention:
By way of example, in step a) described above, the mixed anhydride is formed by reaction of the acid (IX), (X) or (XI) with ethyl or isobutyl chloroformate in the presence of a tertiary amine such as NMM (N-methylmorpholine), DIEA (di-isopropylethylamine) or Et3N in THF (tetrahydrofurane) at a temperature of −15° C.
By way of example, in step b) described above, the solution of acyl azide is heated in a suitable solvent (particularly toluene or xylene), to a temperature of 65° C.
By way of example, in step c) described above, the treatment of the isocyanate is carried out, when it is in solution, for example in hot toluene, at a temperature of 65° C.
According to another embodiment of the invention, the process of preparation of the compounds of formula (VI) or (VII) comprises the reaction of compounds containing primary or secondary amines or alcohols, with one of the products of formula (I bis), (II), (III bis), (IV), (V) or (Vbis) defined above, for example in a solvent such as DMF, H2O/acetone, THF, dichloromethane or acetonitrile with or without the addition of a base such as a tertiary amine (for example Et3N, DIEA, NMM, collidine, lutidine) or such as sodium carbonate (Na2CO3) or sodium bicarbonate (NaHCO3).
According to another preferred embodiment of the invention, the process of preparation of the compounds of formula (VIII bis) comprises the intramolecular cyclization of products of formula (III bis) or compounds of formula (VII), for example in a solvent such as DMF, H2O/acetone, THF, dichloromethane or acetonitrile with or without the addition of a base such as a tertiary amine (for example Et3N, DIEA, NMM, collidine, lutidine) or such as sodium carbonate (Na2CO3).
FIG. 1: FIG. 1 corresponds to the X-ray structure of the carbamate (Ig) corresponding to the following formula:
The invention is illustrated hereafter by examples I to III, which have no limiting value.
In example I, the reaction of the O-succinimidyl-2-(tert-butoxycarbonylamino)-ethylcarbamate derivatives with aliphatic or aromatic primary amines, secondary amines, or α- or β-amino acid derivatives, rapidly gives urea derivatives or urea oligomers with a high yield.
In example II, the O-succinimidyl-2-[(9H-fluoren-9-ylmethoxy)carbonylamino]-ethylcarbamate derivatives used in a repetitive manner in solid phase permit obtaining the desired urea pseudopeptides and urea oligomers, with a high yield.
EXAMPLE IAn efficacious synthesis of O-succinimidyl-2-(tert-Butoxycarbonylamino)-ethylcarbamate derivatives (I) and (Ibis) is described as well as their utilization as monomers active in the synthesis of di- and tri-substituted ureas and urea oligomers. The β-amino N-Boc-protected acids (IX) are first transformed into the corresponding acyl azide derivatives (XII). The isocyanate formed by Curtius rearrangement of compounds (XII) is immediately treated with N-hydroxysuccinimide in the presence of pyridin to give the corresponding carbamates (I) and (Ibis) (see the formula of reaction 1) (50-64%). These carbamates are stable and crystalline compounds which react spontaneously with primary and secondary amines at ambient temperature to give (VIe) ureas (79-87%). By way of example, the synthesis of the N-boc-protected tri-urea derivative (VIg) has also been carried out by step-by-step addition using carbamate (Ib).
The N-Boc-protected β-amino acids (IX) are first transformed into the corresponding acyl azides (XII) by reaction of their mixed anhydride (prepared with EtOCOCl/N-methylmorpholine) with NaN3. The isocyanates (II), generated in situ by heating the acyl azide (XII) in toluene at 65° are immediately treated with N-hydroxysuccinimide (1 equivalent) in the presence of pyridine (1 equivalent) to give the carbamate (I) and (I bis). This sequence of reaction from (IX) is generally complete in less than one hour (reaction 1).
The O-succinimidyl carbamates (I) and (Ibis) crystallize for the most part directly from the solution of toluene at ambient temperature and are obtained simply by filtration with suitable yield. Recrystallization in toluene or another suitable solvent permits obtaining pure specimens for analysis. It is interesting to note that the mild conditions employed are compatible with the use of functionalized side chains (Table 1)
| TABLE 1 |
| Conversion of β-amino acids (IX) into O- |
| succinimidyl carbamates (I) and (Ibis). |
| Products | m.p. | |||
| R = | (I) and (I bis) | Yield (%)a | (° C.) | HPLC tR(min)b |
| H | Ia | 55 | 132-134 | 6.95 |
| Me | Ib | 60 | 153-155 | 8.00 |
| i-Pr | Ic | 51 | 125-127 | 10.80 |
| Bn | Id | 55 | 163-164 | 12.79 |
| CH2CO2(Bzl) | Ie | 58 | 115-117 | 13.47 |
| CH(Me)OBzl | If | 64 | 109-110 | 14.59 |
aYield of (I) and (I bis) after recrystallization. |
||||
blinear gradient of A (0.1% CF3COOH in H2O) and B (MeCN containing 0.08% CF3COOH), 20-80% B, 20 min. The compound of formula (I) and (I bis) is that indicated in reaction 1 above. |
Starting with 2-nitrobenzoic acid8, the corresponding O-succinimidyl carbamate (Ig) has been isolated with 71% yield after recrystallization in ethyl acetate. The X-ray structure of the carbamate (Ig) (FIG. 1) shows that the molecule has an extended configuration with an intra-molecular hydrogen bond between the adjacent nitro and carbamate groups (N2.O2, 2.62 Å). The succinimidyl cycle is turned about 77° relative to the plane of the phenyl cycle.
Carbamates (I), (I bis) and (Ig) are stable crystalline solids which can be stored for months at 4° C. without degradation. So as to study the possibilities and limits of the activated monomers of the invention for the preparation of substituted symmetric ureas, different amines and amino acids have been treated with the carbamates (I) and (I bis). The results are shown in Table 2.
| TABLE 2 |
| Formation of substituted ureas (VI) with carbamates (I) and (I bis) |
| Entry | Carbamate | Amine | Time (min)a | Urea VI | Yield (%)b |
| 1 | Ia | 20 | 78 | ||
| 2 | Ib | 20 | 85 | ||
| 3 | Id | 20 | 87 | ||
| 4 | Id | 30 | 89 | ||
aReaction conditions: carbamate (3 mmnol), amine (3-4 mmol), Hunig base (3 mmol), DMF (5 ml), ta. |
|||||
byield after purification. |
It is found that the carbamates (I) and (I bis) react with primary amines or amino acids in the presence of Hunig base at ambient temperature to give the corresponding urea derivatives (VI) with good yield (table 1, entry 1, 2). The reaction is very rapid and all the initial product is generally consumed in twenty minutes. The N-hydroxysuccinimide is the only secondary product formed during the reaction and is easily eliminated by aqueous washing. Under the same conditions, the aromatic amines such as aniline (entry 3) and a secondary amine (entry 4) also rapidly react with the carbamate (Id) to give the respective ureas (VIc) and (VId).
The repetitive formation of urea by using carbamates (I) and (I bis) as activated monomers permits obtaining urea oligomers as shown by the synthesis of Boc-AuCH2-AuCH2-i-Pr (VIe) and Boc-AuCH2-AuCH2-AuCH2-i-Pr (VIf). (reaction 2).9
In conclusion, the O-succinimidyl-β-(tert-butoxy-carbonyl-amino)-carbamates (I) and (Ibis) are easily prepared from β-amino acids and react properly and with good yield with the primary and secondary amines to form urea derivatives. The mild conditions employed for the preparation of carbamates (I) and (Ibis) are compatible with most of the side chains of the natural amino acids and these stable intermediaries represent synthons attractive for the synthesis in solid phase of urea peptides and urea oligomers.
Experimental Section
Generalities.
The amino acid derivatives have been bought from Neosystem or Novabiochem. THF is distilled with Na/benzophenone under argon before use. The toluene is distilled over P2O5 and preserved on a 4 Å molecular sieve. The aniline was passed through an alumina column before use. The Boc-β3-amino acids were prepared according to procedures of the literature10 by Arndt-Eistert homologation of the commercial protected amino acids. Reactions were conducted under argon pressure. The HPLC analysis was carried out on a Nucleosil C18 column (5 m, 3.9×150 mm) by using a linear gradient of A (0.1% CF3COOH in H2O) and B (MeCN) at a flow rate of 1.2 ml/min with UV detection at 214 nm.
General Procedure for the Preparation of O-Succinimidyl Carbamates (I) and (Ibis)The N-protected β-amino acid (10 mmol) is dissolved in THF (30 ml) under argon and cooled to −20°. After addition of i-BuOCOCl (11 mmol) and NMM (11 mmol, 1.1 equivalent), the reaction mixture is agitated at −20° for 20 minutes. The resulting white suspension is reheated to −5°, and is treated with a 5 ml solution of NaN3 (25 mmol). The mixture is then agitated for 5 minutes, diluted with EtOAc, washed with saturated NaCl, dried on MgSO4 and concentrated under reduced pressure to give the acyl azide (XI) which is used without further purification. The toluene is then added under argon and the resulting solution is heated to 65° C. with agitation. Once the emission of gas has stopped (about 10 minutes), the N-hydroxysuccinimide (10 mmol) and the pyridine (10 mmol) are added. The mixture is agitated for 5 minutes at 65° C. and cooled to ambient temperature. In most cases, the desired product crystallizes in the toluene solution and is collected by filtration. Recrystallization in toluene permits obtaining pure O-succinimidyl carbamate. Otherwise, the solvent is evaporated under vacuum and the residue is purified by recrystallization in a suitable solvent.
O-succinimidyl-2-(tert-Butoxycarbonylamino)-ethyl-carbamate (Ia)3-(tert-Butoxycarbonylamino) propanoic acid (3.78 g, 20 mmol) is transformed by following the general procedure. A recrystallization in toluene gives the compound (Ia) (3.3 g, 50%), constituted by colorless crystals; mp. 132-134° C.; HPLC tR 6.95 minutes (linear gradient, 20-80% B, 20 minutes); 1H-NMR (200 MHz, DMSO-D6): 1.38 (s, 9H), 2.76 (s, 4H), 3.00-3.11 (m, 4H), 3.78-3.93 (m, 1H), 6.87 (br t, 1H); 8.27 (t, J=5.1 Hz, 1H). 13C-NMR (50 MHz, CD3CN): 171.7, 157.5, 153.1, 79.7, 42.7, 40.6, 28.6, 26.3. MS (MALDI-TOF) (mass spectroscopy: matrix assisted laser desorption ionization−time of flight) m/z 340 [M+K]+, 324 [M+Na]+. Calculated analysis for C12H19N3O6: C, 47.84; H, 6.36; N, 13.95. Found: C, 48.09; H, 6.65; N, 14.00.
(S)—O-succinimidyl-2-(tert-Butoxycarbonylamino)-propyl-carbamate (Ib)Boc-β3-HAla-OH (3.25 g, 16 mmol) is transformed by following the general procedure. Recrystallization in toluene gives the compound (Ib) (3.05 g, 60% which is a white solid; mp. 153-155° C.; [α]Dr.t.−14.4 (c 1.03, MeCN); HPLC tR 8.00 min (linear gradient, 20-80% B, 20 min); 1H-NMR (200 MHz, CD3CN): 1.07 (d, J=6.8 Hz, 3H), 1.41 (s, 9H), 2.73 (s, 4H), 3.14-3.20 (m, 2H), 3.62-3.72 (m, 1H), 5.25 (br d, 1H), .6.54 (br t, 1H). 13C-NMR (50 MHz, CD3CN): 171.7, 156.7, 153.3, 79.6, 47.7, 47.4, 28.7, 26.3, 18.4. Calculated analysis for C13H21N3O6: C, 49.52; H, 6.71; N, 13.33. Found: C, 49.45; H, 6.57; N, 13.18.
(S)—O-succinmidyl-2-(tert-butoxycarbonylamino)-(II)-methyl-butylcarbamate (Ic)Boc-β3-HVal-OH (1.27 g, 5.5 mmol) is transformed by following the general procedure. Recrystallization in toluene gives the compound (Ic) (956 mg, 51%) which is a white solid; mp. 125-127° C.; [α]Dr.t.−41.2 (c=1.15,THF, CHCl3); HPLC tR 10.80 min (linear gradient, 20-80% B, 20 min); 1H-NMR (200 MHz, CD3CN): 0.89 (t, J=7.0 Hz, 6H), 1.42 (s, 9H), 1.65-1.78 (m, 1H), 2.73 (s, 4H), 3.11-3.52 (m, 3H), 5.18 (br d, J=8.5 Hz, 1H), 6.46 (br-t, 1H). 13C-NMR (50 MHz, CD3CN): 171.7, 157.7, 153.5, 79.3, 56.7, 44.8, 31.0, 28.7, 26.3, 19.8, 18.3. MS (MALDI-TOF) m/z 383 [M+K]+, 367 [M+Na]+. Calculated analysis for C15H25N3O6: C, 52.47; H, 7.34; N, 12.24. Found: C, 52.26; H, 7.13; N, 11.92.
(S)—O-succinimidyl-2-(tert-butoxycarbonylamino)-4-phenyl-propylcarbamate (Id)Boc-β3-HPhe-OH (8.27 g, 29.5 mmol) is transformed by following the general procedure. Recrystallization in toluene gives the compound (Id) (6.6 g, 57 which is a white solid; mp. 163-164° C.; [α]Dr.t-15 (c 1.17, MeCN); HPLC tR 12.79 min (linear gradient, 20-80% B, 20 min); 1H-NMR (200 MHz, CD3CN): 1.33 (s, 9H), 2.68-2.90 (m, 6H), 3.16-3.37 (m, 2H), 3.78-3.93 (m, 1H), 5.26 (d, J=8.0 Hz, 1H), .6.54 (br t, 1H); 7.16-7.34 (m, 5H). 13C-NMR (50 MHz, CD3CN): 171.7, 157.3, 153.3, 139.4, 130.3, 129.4, 127.4, 79.6, 53.2, 46.3, 39.0, 28.6, 26.3. MS (MALDI-TOF) m/z 430 [M+K]+, 414 [M+Na]+. Calculated analysis for C19H25N3O6: C, 58.30; H, 6.44 N, 10.74. Found: C, 58.17; H, 6.38; N, 10.69.
(S)—O-succinimidyl-3-(benzyloxycarbonyl)-2-(tert-butoxycarbonylamino)-propylcarbamate (Ie)Boc-β3-HAsp(Bzl)-OH (2.53 g, 7.5 mmol) is transformed by following the general procedure. Recrystallization in toluene gives the compound (Ie) (1.94 g, 58%) which is a white solid; mp. 115-117° C.; [α]Dr.t-16.3 (c 1.3, THF); HPLC tR 13.47 min (linear gradient, 20-80% B, 20 min); 1H-NMR (200 MHz, CD3CN): 1.46 (s, 9H), 2.47-2.58 (m, 2H); 2.73 (s, 4H), 3.29 (t, J=6.2 Hz, 2H), 3.96-4.08 (m-, 1H), 5.10 (s, 2H), 5.45 (br d, J=6.2 Hz, 1H); 6.54 (br t, 1H); 7.29-7.41 (m, 5H). 13C-NMR (50 MHz, CD3CN): 26.3, 28.7, 37.6, 45.8, 48.9, 67.2, 80.0, 118.3, 129.1, 129.6, 137.3, 153.4, 156.5, 171.6, 171.7. MS (MALDI-TOF) m/z. 488 [M+K]+, 472 [M+Na]+. Calculated analysis for C21H27N3O8: C, 56.12; H, 6.05; N, 9.35. Found: C, 55.89; H, 6.01; N, 9.32.
(S)—O-succinimidyl-3-(benzyloxy)-2-(tert-butoxy-carbonylamino)-propylcarbamate (If)Boc-β3-HThr(Bzl)-OH (2.31 g, 7.14 mmol) is transformed by following the general procedure. Recrystallization in AcOEt/hexane gives the compound (If) (2.0 g, 64 which is a white solid; mp. 109-110° C.; [α]Dr.t.+8.6 (c 1.07, CH3CN); HPLC tR 14.59 min (linear gradient, 20-80% B, 20 min); 1H-NMR (200 MHz, CD3CN): 1.16 (d, J=6.1 Hz, 3H), 1.43 (s, 9H), 2.73 (s, 4H), 3.21-3.44 (m, 2H), 3.61-3.76 (m, 2H), 4.51 (Abq, J=11.5 Hz, 2H), 5.21 (br d, J=9.1 Hz, 1H), 6.49 (br t, 1H), 7.25-7.39 (m, 5H). 13C-NMR (50 MHz, CD3CN) 16.4, 26.3, 28.6, 44.1, 55.3, 71.5, 75.1, 128.5, 128.8, 129.3. MS (MALDI-TOF) m/z 475 [M+K]+, 459 [M+Na]+. Calculated analysis for C21H29N3O7: C, 57.92; H, 6.71; N, 9.65. Found: C, 58.02; H, 6.67; N, 9.81.
O-succinimidyl-′(2-nitrophenyl)carbamate (Ig) (see FIG. 1).2-nitrobenzoic acid (1.17 g, 7 mmol) is transformed by following the general procedure. Recrystallization in AcOEt gives the compound (Ig) (1.39 g, 71%) which is present in the form of light yellow crystals; mp. 166-167° C.; HPLC tR 9.45 min (linear gradient, 20-80% B, 20 min); 1H-NMR (200 MHz, CDCl3): 2.89 (s, 4H), 7.26 (dt, 1H), 7.69 (dt, 1H), 8.26 (dd, 1H), 8.40 (dd, 1H), 10.40 (br s). 13C-NMR (50 MHz, CDCl3): 25.6, 120.8, 124.1, 126.2, 133.1, 136.2, 148.5, 169.2. MS (MALDI-TOF) m/z 318 [M+K]+, 302 [M+Na]+. Calculated analysis for C12H10N2O6: C, 47.32; H, 3.25; N, 15.05. Found: C, 47.45; H, 3.26; N, 15.07.
Formation of Ureas: General Procedure.
O-succinimidyl carbamates (I) and (I bis) (1 mmol) and Hunig base (1 mmol) are added to a solution of the amine (1.3 mmol) in 5 ml DMF. After 10-30 minutes, the reaction mixture is diluted with saturated NaHCO3, and extracted with AcOEt. The organic phase is washed with 1 N KHSO4, saturated NaCl, NaHCO3, saturated NaCl, dried (MgSO4) and evaporated. Chromatography and/or recrystallization give the pure urea (VI).
Methyl (2S, 3R)-2-{[2-(text-Butoxycarbonylamino)ethyl]-ureido}-3-methyl-pentanoate (Boc-GuCH2-Leu-OMe, (VIa))The carbamate (Ia) (602 mg, 2 mmol) is treated with HCl.H-Leu-OMe (436 mg, 2.4 mmol) following the general procedure. Recrystallization in EtOAc/diisopropylether gives (VIa) (520 mg, 78%) which is present in the form of colorless needles; mp. 86-89° C.; [α]Dr.t.−10.8 (c 1.02, MeOH); HPLC tR 11.39 min (linear gradient, 20-80% B, 20 min); 1H-NMR (200 MHz, CDCl3): 0.90 (d, J=6.4 Hz, 3H), 0.91 (d, J=6.2 Hz, 3H), 1.41 (s, 9H), 1.45-1.75 (m, 3H), 3.16-3.32 (m, 4H), 3.69 (s, 3H), 4.36-4.47 (m, 1H), 5.34 (br t, J=5.2, 1H), 6.14 (d, J=8.2, 1H), 6.76 (br t, J=5.0, 1H). 13C-NMR (50 MHz, CDCl3): 21.9, 22.9, 24.8, 28.4, 40.3, 41.3, 41.8, 51.7, 52.1, 79.4, 156.7, 158.5, 175.3. MS (MALDI-TOF) m/z 370 [M+K]+, 354 [M+Na]+, 332 [M+1]+. Calculated analysis for C15H29N3O5: H2O: C, 52.94; H, 8.82 N, 12.35. Found: C, 52.92; H, 8.68; N, 12.27.
(2S)-1-[2-(tert-Butoxycarbonylamino)-propyl]-3-(1-methyl-ethyl)-urea (Boc-AuCH2-i-Pr, (VIb))The carbamate (Ib) (901 mg, 2.86 mmol) is treated with i-PrNH2 (511 l, 6 mmol) according to the general procedure to give (VIb) (701 mg, 95%) which is a white solid; mp. 101° C.; [α]Dr.t.−7.4 (c 0.89, MeOH); HPLC tR 8.71 min (linear gradient, 20-80% B, 20 min); 1H-NMR (200 MHz, CD3CN): 1.03 (d, J=6.6 Hz, 3H), 1.07 (d, J=6.5 Hz, 6H), 1.40 (s, 9H), 3.02-3.08 (m, 2H), .3.47-3.60 (m, 1H), 3.65-3.81 (m, 1H), 4.92 (br d, 1H); 5.1 (br t, 1H), 5.66 (br, 1H); 13C-NMR (50 MHz, CD3CN): 158.4, 156.4, 79.4, 47.7, 46.2, 42.2, 28.5, 23.4, 23.3, 18.6. MS (MALDI-TOF) m/z 298 [M+K]+, 282 [M+Na]+. Calculated analysis for C12H25N3O3: C, 55.57; H, 9.72; N, 16.20. Found: C, 55.56; H, 9.82; N, 16.16.
(2S)-1-[2-(tert-Butoxycarbonylamino)-3-phenyl-propyl]-3-phenyl-urea (Boc-FuCH2-Ph, (VIc))The carbamate (Id) (500 mg, 1.28 mmol) is treated with PhNH2 (119 mg, 1.28 mmol) according to the general procedure. A recrystallization in CH2Cl2/hexane gives (VIc) (412 mg, 87%) which is a white solid. mp. 154° C.; [α]Dr.t.+10.3 (c 1.03, MeOH); HPLC tR 15.23 min (linear gradient, 20-80% B, 20 min); 1H-NMR (400 MHz, CD3OD): 1.35 (s, 9H), 2.70 (dd, J=8.0, 13.7 Hz, 1H), 2.80 (dd, J=7.8, 13.7 Hz, 1H), 3.16 (dd, J=8.6, 13.6 Hz, 1H), 3.33 (dd, J=4.6, 17.1 Hz, 1H), 3.81-3.85 (m, 1H), 7.16-7.34 (m, 10H). 13C-NMR (400 MHz, CD3OD): 158.8, 158.6, 141.3, 140.1, 130.8, 130.2, 129.8, 127.7, 123.9, 120.7, 80.4, 54.6, 44.8, 40.3, 29.1, 28.8. MS (MALDI-TOF) m/z 408 [M+K]+, 392 [M+Na]+, 370 [M+1]+. Calculated analysis for C21H27N3O3: C, 68.27H, 7.37; N, 11.37. Found: C, 68.19; H, 7.32; N, 11.47.
Boc-FuCH2-Pro-NH2, (VId)The carbamate (Id) (1.16 g, 3 mmol) is treated with HCl.H-Pro-NH2 (540 mg, 3.6 mmol)) according to the general procedure. A chromatography (CHCl3/MeOH 10:1) gives (VId) (1.16 g, 88%) which is a white solid; mp. 96-98° C.; [α]Dr.t.−20.4 (c 1.02, MeOH); HPLC tR 10.02 min (linear-gradient, 20-80% B, 20 min); 1H-NMR (200 MHz, CD3OD): 1.36 (s, 9H), 1.88-2.17 (m, 4H), 2.59-2.83 (m, 2H); 2.96 (dd, J=9.4, 13.6 Hz, 1H), 3.21-3.50 (m, 3H), 3.89-3.99 (m, 1H), 4.29 (dd, J=3.2, 8.1 Hz, H), 7.11-7.29 (m, 5H). 13C-NMR (200 MHz, CDCl3): 24.7, 28.4, 28.8, 39.0, 45.7, 46.3, 51.6, 60.1, 79.6, 126.6, 128.6, 129.2, 137.4, 156.6, 157.8, 175.4. MS (MALDI-TOF) m/z 429 [M+K]+, 413 [M+Na]+, 391 [M+1]+. Calculated analysis for C20H30N4O4: C, 61.52; H, 7.74. Found: C, 61.78H, 7.77.
Boc-AuCH2-AuCH2-i-Pr, (VIe)The product (VIb) (650 mg, 2.5 mmol) is dissolved in CF3COOH (0.25M) at 0°. After agitation at ambient temperature for 30 minutes and concentration under reduced pressure, the trifluoroacetate salt is dried under vacuum under KOH and used without further purification.
The carbamate (Ib) is treated with a solution of trifluoroacetate salt according to the general procedure. Recrystallization in EtOH/hexane gives (VIe) (630 mg, 70%) which is a white solid. mp. 184-185° C., [α]Dr.t.+9.3 (c 0.88, MeOH); HPLC tR 8.52 min (linear gradient, 20-80% B, 20 min); 1H-NMR (200 MHz, CD3OD): 1.05-1.12 (m, 12H), 1.42 (s, 9H), 2.92-3.24 (m, 4H), .3.56-3.84 (m, 2H); 13C-NMR (100 MHz, CD3OD): 160.9, 160.7, 158.2, 80.0, 48.2, 47.8, 46.8, 46.4, 42.9, 28.5, 23.6, 23.5, 19.1, 18.6. Calculated analysis for C16H33N5O4: C, 53.46; H, 9.25; N, 19.48. Found: C, 53.62; H, 9.29; N, 19.43.
Boc-AuCH2-AuCH2-AuCH2-i-Pr, (VIf)The product (VIe) (440 mg, 1.22 mmol) is dissolved in CF3COOH (0.25M) at 0°. After agitation at ambient temperature and concentration under reduced pressure the trifluoroacetate salt, which precipitates by addition of Et2O, is collected by filtration, dried under vacuum under KOH and is used without further purification.
To a solution of this salt in DMF are added successively (Ib) and Hunig base (637 l, 3.66 mmol). The reaction mixture is agitated for 20 minutes and saturated NaHCO3 is added. The precipitate which forms is filtered, washed with saturated NaHCO3, water, and Et2O and is dried under vacuum on P2O5 to give (VIf) (350 mg, 62%) which is a white solid. mp. 210-211° C., [α]Dr.t. 63.6 (c 1.00, MeOH); HPLC tR 8.53 min (linear gradient, 20-80% B, 20 min) 1H-NMR (200 MHz, CD3OD): 1.03-1.12 (m, 15H), 1.44 (s, 9H), 2.55-2.85 (m, 3H), 3.21-3.39 (m, 3H), 3.61-3.95 (m, 4H); 13C-NMR (100 MHz, CD3OD): 161.2, 161.1, 160.9, 158.7, 80.3, 48.2, 47.6, 47.5, 47.2, 47.1, 46.8, 43.0, 29.0, 23.8, 23.7, 19.5, 19.0, 18.7. MS (MALDI-TOF) m/z 499 [M+K]+, 483 [M+Na]+, 461 [M+1]+. Calculated analysis for C20H41N7O5: C, 52.27; H, 8.99;N, 21.33. Found: C, 52.23; H, 9.00; N, 20.93.
EXAMPLE II Preparation of O-succinimidyl-2-[(9H-fluoren-9-yl-ethoxy)carbonylamino]-ethylcarbamate derivatives from β-amino acids and application to the synthesis in solid phase of oligoureas and of pseudopeptide urea: 1) Preparation of O-Succinimidyl Carbamates (I) and (I Bis)
In accordance with reaction 1, the N-Fmoc-protected β-amino acids (IX) comprising side chains of natural amino acids Ala, Val, Leu, Phe, Tyr, et Lys are converted into the corresponding acyl azides (XII) by reaction of their mixed anhydride (formed with EtOCOCl/N-methyl morpholine (NMM)) with an aqueous solution of NaN3 (2.5 equiv). The intermediate isocyanates (II) obtained by Curtius rearrangement on (XII) (toluene, 65° C., 5 to 15 min) are immediately treated with N-hydroxysuccinimide (1 equivalent) in the presence or not of pyridine (1 equivalent) to give the carbamates (I) and (Ibis) as crystalline products (see the yield in Table 1). As in the case of the Boc derivatives (see example 1), this reaction sequence is generally complete in 1 hour. As has been shown for the Boc-protected derivatives, the carbamates (I) and (Ibis) precipitate or recrystallize directly from the toluene solution and are simply collected by filtration. In the case of these Fmoc protected derivatives, the yields obtained (51-86%) are better than with the corresponding Boc derivatives.
Similarly, these carbamates (I) and (Ibis) can be stored at ambient temperature or at 4° C. without noticeable degradation.
Table 1 shows the conversion of β-amino acids (IX) into the corresponding O-succinimidyl carbamates (I) and (I bis).
| Carbamates | [α]25D | HPLC tR | |||
| R = | (I) and (Ibis) | Yield (%)a | mp (° C.) | (c, DMF) | (min)b |
| Me | Ih | 86 | 161-163 | −3.6 (c = 1.08) | 10.44 |
| iPr | Ii | 69 | 109-111 | +5.9 (c = 1.18) | 11.84 |
| iBu | Ij | 51 | 134-137 | −10.8 (c = 1.01) | 12.63 |
| Bn | Ik | 66 | 175-177 | −26.1 (c = 1.13) | 12.48 |
| Bn(OtBu) | Il | 78 | 138-140 | −22.9 (c = 1.12) | 13.87 |
| (CH2)4NH(Boc) | Im | 79 | 122-124 | −4.7 (c = 1.16) | 12.67 |
aYield of (I) and (I bis) after recrystallization from toluene. |
|||||
blinear gradient of A (0.1% TFA in H2O) and B (MeCN containing 0.08% TFA), 30-100% B, 20 min. |
The N-protected β-amino acid (10 mmol) is dissolved in THF (30 ml) under Ar and cooled to −20°. After addition of i-BuOCOCl -(11 mmol) and NMM (11 mmol, 1.1. equivalent), the reaction mixture is agitated at −20° for 20 minutes. The resulting white solution is reheated to −5°, and is treated with a solution (5 ml) of NaN3 (25 mmol). The mixture is then agitated for 5 minutes, diluted with EtOAc, washed with saturated NaCl, dried on MgSO4 and concentrated under reduced pressure to give the acyl azide which is used without further purification. Toluene is then added under argon and the resulting solution is heated to 65° C. with agitation. Once the emission of gas has ceased (about 10 minutes), the N-hydroxysuccinimide (10 mmol) and the pyridine (10 mmol) are added. The mixture is agitated for 5 minutes at 65° C. and cooled to ambient temperature. In most cases, the desired product crystallizes in the toluene solution and is collected by filtration. Recristallization in toluene permits obtaining pure O-succinimidyl carbamate. Otherwise, the solvent is evaporated under vacuum and the residue is purified by recrystallization in the appropriate solution.
2) Application to Synthesis on a Solid Support
With monomers (Ih)-(Im), the aim was the preparation of ureidopeptide (VIIa) and oligoureas (VIIb)-(VIId) containing six to nine urea linkages.
(The abbreviations used for the derivative (VIId) are defined in reference 9).
Incorporation of a Urea Structure in a Peptide.
The peptide sequence selected by way of example is that of the tumoral antigen MART(27-35) of the sequence:
The use of the carbamate (Ih) has permitted the introduction of a urea structure between Ala28 and Gly29.
The synthesis in solid phase of the peptide up to Gly29 is carried out by Fmoc chemistry (Fluorenyl methoxycarbonyl) on a scale of 100 moles by starting with a Wang resin (p-benzyloxybenzyl alcohol) substituted with valine according to conventional methods of synthesis of peptides in solid phase (References: Methods in Enzymology, Vol. 89, Solid Phase Peptide Synthesis, Ed: G. B. Fields, Academic Press, NY, USA). After deprotection of the Fmoc group of Gly29 with 20% piperidine in DMF, the carbamate (Ih) (5 equivalents) dissolved in DMF followed by diisopropylethylamine (5 equivalents) are added to the resin, and the reaction is left to proceed for 45 minutes. This operation can if desired be repeated once. After washing and rinsing of the resin, the Fmoc group is deprotected as above, and Fmoc-Ala-OH is coupled to the resin by using methods described in the literature (references: Methods in Enzymology, Vol. 89, Solid Phase Peptide Synthesis, Ed: G. B. Fields, Academic Press, NY, USA).
After cleaving the resin by conventional protocols used in peptide synthesis in solid phase (references: Methods in Enzymology, Vol. 89, Solid Phase Peptide Synthesis, Ed.: G. B. Fields, Academic Press, NY, USA), the desired crude product (VIIa) is obtained after lyophilization with a purity of 73% (by HPLC) (see table 2 below). After purification by HPLC and lyophilization, the product is obtained with a purity of 99.2%. The pure product is characterized by mass spectrometry (MALDI-MS) and by HPLC.
Synthesis of Urea Oligomers from O-Succinimidyl Carbamates of Formula (I) and (I bis)The general synthesis reaction of oligoureas (VIIb)-(VIId) is shown in reaction 2. The products (VIIb)-(VIId) have been synthesized in solid phase from a commercial Rink amide resin (4-(2′,4′-dimethoxyphenyl-Fmoc-amino-methyl)phenoxyacetamido-4-methylbenzhydrylamine resin) (0.60 mequiv/g) on a scale of 100 μmole.
The carbamates (Ih) to (Im) (5 equiv.) in 2 ml of DMF are added to a suspension of the resin in DMF (2 ml) followed by diisopropylethylamine (5 equiv.). The reaction is left to run 90 minutes and repeated, after filtration of the resin. The Fmoc group is then cleaved by treated with 20% piperidine in DMF. The washing and filtration techniques of the resin as well as the deprotection of the Fmoc group are those currently used in peptide synthesis in solid phase. The whole operation (coupling and deprotection of the Fmoc) is repeated several times with carbamates (Ih) and (Im) alternating, to give, after cleavage of the resin (standard cleavage used in peptide synthesis in solid phase with the Fmoc strategy) the crude products (VIIb) to (VIId) with good yield.
The purity of the crude products is given in Table 2 below. The HPLC purification on a C18 column, followed by lyophilization, gives pure products (VIIb)-(VIId) with an overall yield comprised between 20 and 50% (Entries 1-4 of Table 2).
| TABLE 2 |
| Characterization of ureidopeptide (VIIa) and |
| oligoureas (VIIb)-(VIId). |
| HPLC | ||||||
| crude | Global | HPLC | ||||
| purity | yield | tR | ||||
| Entry | Product | Base | (%) | (%)a | (min)b | MALDI-TOF MS |
| 1 | VIIa | DIEA | 73 | 50 | 12.57c | 842.9 [M + H]+ |
| 2 | VIIb | DIEA | 63 | 42 | 10.86d | 846.8 [M + H]+ |
| 3 | VIIc | DIEA | 51 | 38 | 14.58c | 1051.5 [M + H]+ |
| 4 | VIId | DIEA | 35 | 20 | 15.14c | 1393.0 [M + H]+ |
| 5 | VIIc | NMM | 66 | 57 | 14.70c | 1073.2 [M + Na]+ |
| 6 | VIIc | — | 61 | 55 | 14.59c | 1072.8 [M + Na]+ |
aafter purification and lyophilization. |
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blinear gradient of A (0.1% TFA in H2O) and B (MeCN containing 0.08% TFA). |
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c5-65% B, 20 min. |
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d20-80% B, 20 min. |
The quantity of impurities present in the raw product of synthesis increases with the size of the oligomer. Analysis by MALDI-TOF-MS shows that the principal impurities isolated by HPLC on a C18 column arise either from deletions (products of lower mass that can result from incomplete couplings or else incomplete deprotection of the Fmoc group in the latter stages of synthesis), or more surprisingly by double insertion of monomers. A study of the stability of the carbamates (Ih)-(Im) in the solutions of DMF containing 5% diisopropylethylamine (DIEA) shows substantial degradation as well as partial cleavage of the Fmoc group. Based on these results, more gentle conditions for the reaction have been evaluated. On the one hand, the use of a weaker tertiary base such as N-methyl morpholine (NMM) gives better results (entry 5 of table 2). On the other hand, it has been shown that the use of a tertiary base was not necessary because good results are obtained in the absence of a base by using identical reaction times (see entry 6 of table 2).
In conclusion, there has been described an effective method for the preparation of optically active O-succinimidyl (9H-fluoren-9-ylmethoxycarbonylamino)-ethyl carbamate derivatives (Ih)-(Im) and their use as activated monomers in the synthesis in solid phase of oligoureas.
EXAMPLE III Preparation of O-Succinimidyl Carbamate Derivatives (III) and (III Bis) from N-Protected Dipeptides and Application to the Synthesis of Ureido Peptide and Hybrid Peptide/Oligoureas. 1) Preparation of O-Succinimidyle Carbamates (III) and (III Bis)
In accordance with reaction 1, the N-Boc or N-Fmoc protected dipeptides (X) comprising side chains of natural amino acids Ala, Val, Leu, Phe, Tyr, and Lys, are converted into corresponding acyl azides (XIII) by reaction of their mixed anhydride (formed with EtOCOCl/N-methyl morpholine (NMM) with an aqueous solution of NaN3 (2.5 equivalent).
The intermediate isocyanates (IV) obtained by Curtius rearrangement on (XIII) (toluene, 65° C., 5 to 15 minutes) are immediately treated with N-hydroxysuccinimide (1 equivalent) in the presence or not of pyridine (1 equivalent) to give carbamates (III) and (III bis) as crystalline products (see the yields in Table 1). As in examples I and II, this reaction sequence is generally complete in 1 hour. As has been shown for the Boc-protected β-amino acid derivatives, the carbamates (III) and (III bis) precipitate or recrystallize directly from the toluene solution and are simply collected by filtration. In the case of dipeptide derivatives, the yields obtained (52-93%) are good to excellent.
Similarly, these carbamates (III) and (III bis) can be stored at ambient temperature or at 4° C. without notable degradation.
| TABLE 1 |
| Conversion of dipeptides (X) into the |
| corresponding O-succinimidyl carbamates (III) and (III bis). |
| Carbamates | ||||
| (III) and | Yield | HPLC tR | ||
| Original Dipeptides | (III bis) | (%)a | (min)b | MALDI-TOF MS |
| Boc-Gly-Ile-OH | IIIa | 87 | 9.13c | — |
| Boc-Pro-Val-OH | IIIb | 72 | 11.79e | — |
| Boc-Phe-Leu-OH | IIIc | 82 | 14.01c | 513.46 [M + Na]+ |
| Boc-Ile-Val-OH | IIId | 62 | 13.46e | — |
| Boc-Lys-Val-OH | IIIe | 69 | 14.98c | — |
| Boc-Pro-Leu-OH | IIIf | 76 | 12.73e | — |
| Boc-Phe-Pro-OH | IIIg | 80 | ||
| Fmoc-Ile-Leu-OH | IIIh | 93 | 12.85d | 601.29 [M + Na]+ |
| Fmoc-Phe-Ala-OH | IIIi | 86 | 11.45d | 593.32 [M + Na]+ |
| Fmoc-Ile-Gly-OH | IIIj | 52 | 10.94d | 545.05 [M + Na]+ |
ayields of (III) and (III bis) after recrystallization from toluene. |
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blinear gradient of A (0.1% TFA in H2O) and B (MeCN containing 0.08% TFA), |
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c20-80% B, 20 min, |
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d30-100% B, 20 min, |
||||
e0-100% B, 20 min. |
The N-protected dipeptide (10 mmol) is dissolved in THF (30 ml) under Ar and cooled to −20°. After addition of i-BuOCOCl (11 mmol) and NMM (11 mmol, 1.1 equivalent), the reaction mixture is agitated at −20° for 20 minutes. The resulting white solution is reheated to −5°, and is treated with a solution (5 ml) of NaN3 (25 mmol). The mixture is then agitated for 5 minutes, diluted with EtOAc, washed with saturated NaCl, dried on MgSO4, and concentrated under reduced pressure to give the acyl azide which is used without further purification. The toluene is then added under argon and the resulting solution is heated 65° C. with agitation. Once the generation of gas has stopped (about 10 minutes), the N-hydroxysuccinimide (10 mmol) and the pyridine (10 mmol) are added. The mixture is agitated for 5 minutes at 65° C. and cooled to ambient temperature. In most cases, the desired product crystallizes from the toluene solution and is collected by filtration. Recrystallization in toluene permits obtaining pure O-succinimidyl carbamate. Otherwise, the solvent is evaporated under vacuum and the residue is purified by recrystallization in the suitable solvent.
Experimental Section
General Remarks:
HPLC analyses have been carried out on a C18 column (5 μm, 3.9×150 mm by using a gradient of A (0.1% TFA in H2O) and B (0.08% TFA in MeCN) at a flow rate of 1.2 ml/min with UV detection at 214 nm.
Boc-Gly-gIle-COOSu (IIIa)Yield 87% white solid; HPLC tr 9.13 (linear gradient, 20-80% B, 20 min)—1H RMN ([D6]DMSO, 200 MHz): δ=0.79-0.95 (m, 6H, CH3—CH—CH2—CH3), 0.98-1.14 (m, 2H, CH3—CH—CH2—CH3), 1.38 (s, 9H, C(CH3)3), 1.60-1.78 (m, 1H, CH3—CH—CH2—CH3), 2.77 (s, 4H, CH2—CH2), 3.50-3.68 (m, 2H, NHCH2CO), 5.00-5.20 (m, 1H, NH—CH—NH), 6.90-7.00 (,in, 1H, NHCO2C(CH3)3), 7.99 (d, J=8.6 Hz, 1H, NHCO2SU), 8.54 (d, J=8.0 Hz, 1H, NHCOCH). —13C RMN ([D6]DMSO, 50 MHz): δ=170.7 (CO), 168.7 (CO), 155.7 (CO), 150.8 (CO), 78.0 (C), 61.4 (CH), 43.0 (CH2), 38.1 (CH), 28.0 (CH3), 25.2 (CH2), 24.3 (CH2), 14.2 (CH3), 10.7 (CH3).
Boc-Phe-gLeu-COOSu (IIIc)Yield 82% white solid; HPLC tr 14.01 (linear gradient, 20-80% B, 20 min)—1H RMN ([D6]DMSO, 200 MHz): δ=0.87 (d, J=5.4 Hz, 3H, CH3), 0.88 (d, J=5.4 Hz, 3H, CH3), 1.29 (s, 9H, C(CH3)3), 1.50-1.73 (m, 3H, CH—CH2—CH—(CH3)2), 2.64-2.98 (m, 2H, CH2—C6H5), 2.76 (s, 4H, CH2—CH2), 4.04-4.21 (m, 1H, CHCO), 5.32 (m, 1H, NHCHNH), 6.85 (d, J=8.6 Hz, 1H, NHCO2C(CH3)3), 7.10-7.30 (m, 5H, C6H5), 8.25 (d, J=8.3 Hz, 1H, NHCO2SU), 8.65 (d, J=7.5, 1H, NHCOCH).—13C RMN ([D6]DMSO, 50 MHz): δ=171.0 (C), 170.7 (C), 155.2 (C), 150.2 (C), 138.1 (C), 129.2 (CH), 127.9 (CH), 126.1 (CH), 77.9 (C), 56.4 (CH), 55.5 (CH), 42.9 (CH2), 37.1 (CH2), 28.0 (CH3), 25.2 (CH2), 23.8 (CH), 22.2 (CH3), 21.9 (CH3).
Boc-Lys(2ClZ)-gVal-COOSu (IIIe)Yield 69% white solid; HPLC tr 14.98 (linear gradient, 20-80% B, 20 min)—1H RMN ([D6]DMSO): δ 0.84 (d, J=6.2 Hz, 3H, Me), 0.87 (d, J=5.4 Hz, 3H, Me), 1.15-1.57 (m, 6H, CHCH2CH2CH2), 1.34 (s, 9H, t-Bu), 1.72-1.98 (m, 1H, Me2CH), 2.72 (s, 4H, CH2CO), 2.85-3.08 (m, 2H, CH2NH), 3.78-3.92 (m, 1H, NHCHCO), 4.87-4.99 (m, 1H, NHCHNH), 5.06 (s, 2H, OCH2), 6.82 (d, J=8.2 Hz, 1H, NHCO2 (t-Bu)), 7.24-7.50 (m, 5H, H arom.), 7:93 (d, J=8.7 Hz, 1H, NHCO2Su), 8.54 (d, J=7.9 Hz, 1H, CHCONHCH).—13C RMN ([D6]DMSO, 50 MHz) δ=171.6, 170.6, 150.9, 150.8, 134.5, 132.0 (C), 129.6, 129.2, 127.2 (CH), 77.9 (C), 62.8 (CH), 62.4 (CH2), 54.1 (CH), 40.0 (CH2), 31.8 (CH), 31.2, 29.0 (CH2), 28.1 (CH3), 25.2, 22.7 (CH2), 18.2, 18.0 (CH3).
Fmoc-Phe-gAla-COOSu (IIIi)Yield 86% white solid; HPLC tr 11.45 (linear gradient, 30-100% B, 20 min)—1H RMN ([D6]DMSO, 200 MHz): δ=1.31 (d, J=6.5 Hz, Me), 2.65-2.77 (m, 5H, CH2CO, NCHCH2), 2.75 (br dd, 1H, NCHCH2), 4.04-4.25 (m, 4H, CHCH2O, CHCO), 5.31 (m, 1H, NHCHNH), 7.13-7.41 (m, 9 arom. H), 7.47-7.63 (m, 3H, arom. H, NHCOO2Fm), 7.84 (d, J=7.3 Hz, 2 arom. H), 8.53 (d, J=7.8 Hz, 1H, NHCO2SU), 8.72 (d, J=7.0 Hz, 1H, CHCONHCH).—13C RMN ([D6]DMSO, 50 MHz): δ=170.7, 155.7, 150.3, 143.7, 140.6, 138.2 (C), 129.1, 127.9, 127.5, 127.0, 126.1, 125.2, 120.0 (CH), 65.5 (CH2), 55.8, 54.5, 46.5 (CH), 37.3, 25.2 (CH2), 20.5 (CH3).
Fmoc-Ile-gGly-COOSu (IIIj)Yield 52% white solid; HPLC tr 10.94 (linear gradient, 30-100% B, 20 min)—1H RMN ([D6]DMSO, 200 MHz): δ=0.80 (t, J=7.0 Hz, 3H, Me), 0.83 (d, J=6.6 Hz, 3H, Me), 1.01-1.23 (m, 1H, CH2Me), 1.34-1.50 (m, 1H, CH2Me), 1.59-1.82 (m, 1H, CHMe), 2.76 (s, 4H, CH2CO), 3.91 (t, J=8.0 Hz, 1H, CHCH2O), 4.22-4.30 (m, 3H, CHCH2O, NHCH), 4.35-4.55 (m, 2H, NHCH2), 7.28-7.46 (m, 4H, arom. H, NHCO2Fm), 7.75 (d, J=6.9 Hz, 2 arom. H), 7.89 (d, J=7.0 Hz, 2 arom. H), 8.69 (br. t, J=5.6 Hz, 1H, NHCO2Su), 9.00 (br. t, J=8.0 Hz, 1H, CHCONHCH2).—13C RMN ([D6]DMSO, 50 MHz): δ=171.7, 170.6, 155.8, 151.9, 143.7, 140.6 (C), 127.5, 126.9, 125.3, 120.0 (CH), 65.6 (CH2), 58.8, 46.6 (CH), 45.6 (CH2), 36.3 (CH), 25.2, 24.3 (CH2), 15.2, 10.7 (CH3).
Boc-Pro-gLeu-COOSu (IIIf)Yield 76% white solid; HPLC t, 10.59 (linear gradient, 20-80% B, 20 min)—1H RMN ([D6]DMSO, 200 MHz): δ=0.83 (d, J=6.0 Hz, 6H, CH—(CH3)2), 1.28, 1.34 (s, 9H, C(CH3)3), 1.45-1.52 (m, 3H, CH—CH2—CH—(CH3)2), 1.59-2.05 (m, 4H, CH2—CH2—CH2—CH), 2.72 (s, 4H, CH2—CH2), 3.14-3.36 (m, 2H, N—CH2—CH2), 4.02-4.05 (m, 1H, NCHCO), 5.17-5.27 (m, 1H, NHCHNH), 8.19 (d, J=8.0 Hz, 1H, NHCO2Su), 8.57 (d, J=7.3, 1H, NHCOCH).—13C RMN ([D6]DMSO, 50 MHz): δ=171.73 (C), 171.69 (C), 153.18 (C), 150.45 (C), 78.26 (C), 59.14 (CH), 56.35 (CH), 46.40 (CH2), 42.78 (CH2), .30.88 (CH2), 27.91 (CH3), 25.20 (CH2), 23.82 (CH), 22.85 (C′H2), 22.27 (CH3), 21.87 (CH3).
Boc-Pro-gVal-COOSu (IIIb)Yield 72% white solid; HPLC tr 8.98 (linear gradient, 20-80% B, 20 min)—1H RMN ([D6]DMSO, 200 MHz): δ=0.87 (d, J=6.4 Hz, 6H, CH—(CH3)2), 1.31, 1.37 (s, 9H, C(CH3)3), 1.74-2.07 (m, 5H, CH—CH— (CH3) 2, CH—CH2—CH2—CH2), 2.74 (s, 4H, CH2—CH2), 3.17-3.32 (m, 2H, N—CH2—CH2), 4.10-4.13 (m, 1H, NCHCO), 4.88-5.04 (m, 1H, NHCHNH), 8.08 (d, J=8.5 Hz, 1H, NHCO2SU), 8.49 (d, J=7.8 Hz, 1H, NHCOCH).—13C RMN ([D6]DMSO, 50 MHz): δ=171.84 (C), 170.66 (C), 153.28 (C), 150.80 (C), 78.31 (C), 62.91 (CH), 59.19 (CH), 46.42 (CH2), 31.61 (CH), 30.97 (CH2), 27.98 (CH3), 25.16 (CH2), 22.81 (CH2), 18.23 (CH3).
Boc-Ile-gVal-COOSu (IIId)Yield 62% white solid; HPLC tr 11.67 (linear gradient, 20-80% B, 20 min)—1H RMN ([D6.]DMSO, 200 MHz): δ=0.64-0.91 (m, 12H, CH— (CH3) 2, CH3—CH—CH2—CH3), 0.97-1.05 (m, 1H, CH3—CH—CH2—CH3) 1.27-1.37 (s, 10H, C(CH3)′3, CH3—CH—CH2—CH3), 1.56-1.63 (m, 1H, CH3—CH—CH2—CH3), 1.80-1.94 (m, 1H, CH—CH—(CH3)2), 2.70 (s, 4H, CH2—CH2), 3.71-3.79 (m, 1H, NH—CH—CO), 4.87-4.99 (m, 1H, NHCHNH), 6.66 (d, J=8.9 Hz, 1H, NHBoc), 7.98 (d, J=8.7 Hz, 1H, NHCO2SU), 8.53 (d, J=8.1 Hz, 1H, NHCOCH).—13C RMN ([D6]DMSO, 50 MHz): δ=170.97 (C), 170.60 (C), 155.27 (C), 150.82 (C), 77.89 (C), 62.73° (CH), 58.64 (CH), 36.07 (CH), 31.67 (CH), 28.07 (CH3), 25.18 (CH2), 24.31 (CH2), 18.34 (CH3), 18.13 (CH3), 15.24 (CH3), 10.73 (CH3).
Fmoc-Ile-gLeu-COOSu (IIIh)Yield % white solid; HPLC tr 12.85 (linear gradient, 30-100% Br 20 min)—1H RMN ([D6]DMSO, 200 MHz): δ=(m, 12H, CH— (CH3) 2, CH3—CH—CH2—CH3), (m, 1H, CH3—CH—CH2—CH3) (s, 10H, C(CH3)3, CH3—CH—CH2—CH3), 1.56-1.63 (m, 1H, CH3—CH—CH2—CH3), 1.80-1.94 (m, 1H, CH—CH—(CH3)2), 2.70 (s, 4H, CH2—CH2), 3.71-3.79 (m, 1H,NH—CH—CO), 4.87-4.99 (m, 1H, NHCHNH), 6.66 (d, J=8.9 Hz, 1H, NHBoc), 7.98 (d, J=8.7 Hz, 1H, NHCO2Su), 8.53 (d, J=8.1 Hz, 1H, NHCOCH).—13C RMN ([D6]DMSO, 50 MHz): δ=170.97 (C), 170.60 (C), 155.27 (C), 150.82 (C), 77.89 (C), 62.73 (CH), 58.64 (CH), 36.07 (CH), 31.67 (CH), 28.07 (CH3), 25.18 (CH2), 24.31 (CH2), 18.34 (CH3), 18.13 (CH3), 15.24 (CH3), 10.73 (CH3).
2) Reactivity of Carbamates (III) and (III Bis) with Amines and Amino Acids to Give Urea Dipeptides or UreidopeptidesIt is seen that the carbamates (III) and (IIIbis) react with primary amines or amino acids in the presence of absence of a tertiary base (DIEA, NMM, Et3N) at ambient temperature to give corresponding urea derivatives (VI) (Reaction 2) with good yields (table 2). The reaction is rapid and all the starting product is generally consumed in several hours. The N-hydroxysuccinimide is the only secondary product formed during the reaction and is easily eliminated by aqueous washing.
| TABLE 2 |
| Reactivity of carbamates (III) and (III bis) |
| to give ureas (VI). |
| Carbamate | HPLC | ||||
| (III) and | Urea | Yield | tR | ||
| (III bis) | amine | (VI) | (%)a | (min)b | MALDI-MS |
| IIIf | HN(Me)2 | Boc-Pro-gLeu-CON(Me)2 | c | ||
| IIIf | HNMe | Boc-Pro-gLeu-CONHMe | e | ||
| IIIf | H-Phe-OMe | Boc-Pro-gLeu-CO-Phe-OMe | 92 | 15.1e | |
| IIIe | H2N(i-Pr) | Boc-Lys(2-Cl-Z)-gVal-CONH(i-Pr) | 70 | 15.60e | 593.06 |
| [M + Na]+ | |||||
| IIIe | HN(Bn)2 | Boc-Lys(2-Cl-Z)-gVal-CON(Bn)2 | 74 | 18.25e | 731.68 |
| [M + Na]+ | |||||
| IIId | H-Pro-Me | Boc-Ile-gVal-CO-Pro-OMe | 93 | 13.9e | |
ayield of (VI). |
|||||
blinear gradient of A (0.1% TFA in H2O) and B (MeCN containing 0.08% TFA), |
|||||
c 20-80% B, 20 min, |
|||||
d 30-100% B, 20 min, |
|||||
e0-100% B, 20 min. |
The repetitive formation of urea by using carbamates (III) and (III bis) as activated monomers permits obtaining hybrid oligourea/peptides.
EXAMPLE IVExamples of Cyclic Compounds Corresponding to the Formula (VIII Bis):
The compound (VIII bis/1) can for example be synthesized by intramolecular cyclization of the linear precursor hereinafter corresponding to the formula (VII/1) (1 mmol) by treatment with carbonyldiimidazole (1 mmol) in acetonitrile (200 ml) and in the presence of an excess of DIEA (2.5 mmol) for 12 hours.
After this time, the solvent is evaporated and the residue is purified by liquid chromatography in inverse phase (C18 column) using a linear water/acetonitrile gradient.
The linear precursor (VII/1) can be prepared according to reaction 1 below. The reaction of a first activated carbamate derived from an N-methylated beta amino acid on a monoprotected diamine, leads to the obtention of a trisubstituted monourea. The deprotection of the Boc group and the repeated reaction of the O-succinimidyle carbamate previously used, leads to the obtention of a di-urea. The successive deprotection of the protective groups Boc and Z gives the derivative (VII/1).
REFERENCES
1. Compounds of formula (VIII)
wherein:
I) “n” is a whole number comprised from 1 to 10, preferably from 1 to 4,
II) W′ is or contains:
hydrogen,
a (C1-C20) alkyl group, substituted or not,
an aryl group, whose cyclic structure contains 5 to 20 carbon atoms;
III) Ri and R′i represent independently of each other a hydrogen atom, the protected or unprotected side chain of an amino acid selected from natural and synthetic amino acids, a (C1-C20) alkyl group, substituted or not, or an aryl group;
IV) Y′ is or contains:
a (C1-C20) alkyl group, substituted or not,
an aryl group, or
V)Y is or contains:
a (C1-C20) alkyl group, substituted or not,
an aryl group,
a pseudopeptide,
or forms with N of group NW′ an amino acid residue or a chain of amino acid residues comprising 1 to 10 residues, the acid function of the amino acid residue or of the chain of amino acid residues being fixed on the group NY′,
or forms with N of group NW′ a urea oligomer comprising 1 to 10 residues, the carbonyl function of the urea residue being fixed on the group NY′.
2. Compounds according to claim 1, said compounds having the following formulas:
wherein R1, R2, Z11, Z12, Z21, Z22, Z31 and Z32 have the meanings indicated for Ri and R″i in claim 1.
3. Compounds of formula (VIII bis)
wherein:
I) the total number of atoms forming the cycle is greater than six;
II) “n” is a whole number greater than or equal to 1;
III) “i” is a whole number varying from 2 to n+1;
IV) R1 represents: hydrogen, a (C1-C20) alkyl group, substituted or not, an aryl group, whose cyclic structure contains 5 to 20 carbon atoms;
V) Ri represents: hydrogen, the protected or unprotected side chain of an amino acid selected from natural and synthetic amino acids, a (C1-C20) alkyl group, substituted or not, an aryl group, whose cyclic structure contains 5 to 20 carbon atoms, an ORa, NH2, OH, —COORa, —CONHRa, —CONH2, —CH2COORa, —CH2CONHRa, —CH2CONH2 group,
Ra representing an allyl, benzyl, t-butyl, fluorenylmethyl, alkyl group having 1 to 20 carbon atoms, or an aryl group whose cyclic structure contains 5 to 20 carbon atoms;
VI) Rn+2 represents: hydrogen, a (C1-C20) alkyl group, substituted or not, an aryl group, whose cyclic structure contains 5 to 20 carbon atoms,
VII) optionally groups R1 and Ri can form a cycle;
VIII) Y is or contains:
a (C1-C20) alkyl group, substituted or not,
an aryl group,
a pseudopeptide,
or forms with N of group NW′ an amino acid residue or a chain of amino acid residues comprising 1 to 10 residues, the acid function of the amino acid residue or of the chain of amino acid residues being fixed on the group NR1;
IX) W′is or contains:
hydrogen,
a (C1-C20) alkyl group, substituted or not,
an aryl group, whose cyclic structure contains 5 to 20 carbon atoms,
4. Compounds according to claim 3, having the following formulas:
5. Compounds according to claim 3, wherein the alkyl group is substituted with one or several substituents selected from the groups consisting of —COORh, —CONHRh, —COOH, —OH, —ORh, —NHRh, —NH2, —NH(CO)Rh, aryl whose cyclic structure contains 5 to 20 carbon atoms, halogen, carbonyl of 1 to 10 carbon atoms, nitrile, and guanidine,
Rh representing an allyl, benzyl, t-butyl, fluorenylmethyl, alkyl group having 1 to 20 carbon atoms, or an aryl group whose cyclic structure contains 5 to 20 carbon atoms.
6. Compounds of formula (VII)
wherein:
I) “n” is a whole number greater than or equal to 1,
II) “i” is a whole number varying from 2 to n+1,
III) Y is or contains:
a pseudopeptide,
an amino acid residue or a chain of amino acids comprising 1 to 10 residues,
a GP group which can be:
a protective group selected from the groups consisting of:
oxycarbonyl,
acyl,
GP along with R1 and the N then are bonded to form a phthalimido group of formula:
a biotinyle group having the following formula:
IV) R1 represents: hydrogen, a (C1-C20) alkyl group, substituted or not, an aryl group, whose cyclic structure contains 5 to 20 carbon atoms,
V) Ri represents: hydrogen, halogen, a protected or unprotected side chain of an amino acid selected from natural and synthetic amino acids, a (C1-C20) alkyl group, substituted or not, an aryl group, whose cyclic structure contains 5 to 20 carbon atoms, an ORa, NH2, OH, —COORa, —CONHRa, —CONH2, —CH2COORa, —CH2CONHRa, —CH2CONH2 group,
Ra representing an allyl, benzyl, t-butyl, fluorenylmethyl, alkyl group having 1 to 20 carbon atoms, or an aryl group whose cyclic structure contains 5 to 20 carbon atoms,
VI) W and W′ are or contain:
hydrogen,
a pseudopeptide,
an amino acid residue or a chain of amino acid residues comprising 1 to 10 residues;
VII) optionally R1 and Ri can also form a cycle;
provided that the compounds of the following formulas are excluded:
and provided that the compound of formula (VII) is different from the analogs of the peptide Tyr-Gly-Gly-Phe-Leu-OH, containing one or several derivatives as defined below mimicking the side chain of amino acids present in the peptide and permitting the introduction of one or several urea linkages, wherein the compound of formula (VII) is different from the following compounds:
wherein R represents hydroxybenzyl, a hydrogen atom, a benzyl group, or an isobutyl group,
and provided that the compound of formula (VII) is different from:
7. Compounds according to claim 6, having the formula (VI):
wherein n, i, GP, R1, Ri, W′, and W have the meanings mentioned in claim 6.
8. Compounds according to claim 6, having the following formulas:
wherein:
I) v and m are comprised from 1 to 10,
II) A represents either a protective group selected from the following groups:
oxycarbonyl,
acyl,
GP along with R1 and the N then are bonded to form a phthalimido group of formula:
a biotinyle group having the following formula:
III) Zk, Z′k, Sk, S′k and S′v represent independently from each other a hydrogen atom, a protected or unprotected side chain of an amino acid selected from natural and synthetic amino acids, a halogen, a (C1-C20) alkyl group, substituted or not, or an aryl group.
9. Compounds according to claim 7, having the following formulas:
wherein:
I) v and h are comprised from 1 to 10;
II) D can represent a hydrogen atom, —COOH, —COORc, —CONH2, —CONRcRd,
Rc and Rd representing an allyl, benzyl, t-butyl, fluorenylmethyl, alkyl group having 1 to 20 carbon atoms, or an aryl group whose cyclic structure contains 5 to 20 carbon atoms;
III) Fk, F′k, Sk, S′k, S′v and S′h represent independently from each other a hydrogen atom, a halogen, the protected or unprotected side chain of an amino acid selected from natural and synthetic amino acids, a (C1-C20) alkyl group, substituted or not, or an aryl group.
10. Compounds according to claim 6, wherein the alkyl group is substituted with one or several substituents selected from the groups consisting of —COORh, —CONHRh, —COOH, —OH, —ORh, —NHRh, —NH2, —NH(CO)Rh, aryl whose cyclic structure contains 5 to 20 carbon atoms, halogen, carbonyl of 1 to 10 carbon atoms, nitrile, and guanidine,
Rh representing an allyl, benzyl, t-butyl, fluorenylmethyl, alkyl group having 1 to 20 carbon atoms, or an aryl group whose cyclic structure contains 5 to 20 carbon atoms.
11. A process for the preparation of compounds of formula (VII)-according to claim 6, comprising:
reacting compounds containing primary or secondary amines or alcohols with one of the products of formula (I bis), (II), (III bis) or (IV), in a solvent, with or without the addition of an organic or mineral base, wherein formulas (I bis), (II), (III bis) or (IV) have the following formulas:
wherein:
i, n, Y, GP, R1, and Ri are as defined in claim 6, and
X represents a group conferring on the compound of formula (I bis) or (III bis) a structure of an activated derivative of carbamic acid, which X group is derived from a compound selected particularly from phenols, if desired substituted with at least one nitro or at least one halogen, or hydroxylamine derivatives, or hydroxy-1,2,3-benzotriazole, 1-oxo-2-hydroxydihydrobenzotriazine (HODhbt), 7-aza-1-hydroxy-benzotriazole (HOAt), 4-aza-1-hydroxybenzotriazole (4-HOAt), imidazole and tetrazole.
12. Process according to claim 11, in which the solvent is selected from the group consisiting of DMF, H2O/acetone, THF, dichloromethane, and acetonitrile.