Methods for the detection of brain-specific gene transcripts in blood and uses thereof

Description

CROSS-REFERENCE TO RELATED APPLICATION

This application is a divisional of application Ser. No. 10/268,730 filed on Oct. 9, 2002, which is a continuation of U.S. application Ser. No. 09/477,148 filed Jan. 4, 2000, now abandoned, which claims the benefit of U.S. Provisional Application No. 60/115,125 filed on Jan. 6, 1999, now abandoned. Each of these applications is incorporated herein by reference in their entirety, including the figures and drawings.

BACKGROUND OF THE INVENTION

1. Field of the Invention

The present invention relates generally to the molecular biology of human diseases. More specifically, the present invention relates to a process using the genetic information contained in human peripheral whole blood for the diagnosis, prognosis and monitoring of genetic and infectious disease in the human body.

2. Description of the Related Art

The blood is a vital part of the human circulatory system for the human body. Numerous cell types make up the blood tissue including monocytes, leukocytes, lymphocytes and erythrocytes. Although many blood cell types have been described, there are likely many as yet undiscovered cell types in the human blood. Some of these undiscovered cells may exist transiently, such as those derived from tissues and organs that are constantly interacting with the circulating blood in health and disease. Thus, the blood can provide an immediate picture of what is happening in the human body at any given time.

The turnover of cells in the hematopoietic system is enormous. It was reported that over one trillion cells, including 200 billion erythrocytes and 70 billion neutrophilic leukocytes, turn over each day in the human body (Ogawa 1993). As a consequence of continuous interactions between the blood and the body, genetic changes that occur within the cells or tissues of the body will trigger specific changes in gene expression within blood. It is the goal of the present invention that these genetic alterations be harnessed for diagnostic and prognostic purposes, which may lead to the development of therapeutics for ameliorating disease.

The complete profile of gene expression in the circulating blood remains totally unexplored. It is hypothesized that gene expression in the blood is reflective of body state and, as such, the resultant disruption of homeostasis under conditions of disease can be detected through analysis of transcripts differentially expressed in the blood alone. Thus, the identification of several key transcripts or genetic markers in blood will provide information about the genetic state of the cells, tissues, organ systems of the human body in health and disease.

The prior art is deficient in non-invasive methods of screening for tissue-specific diseases. The present invention fulfills this long-standing need and desire in the art.

SUMMARY OF THE INVENTION

This present invention discloses a process of using the genetic information contained in human peripheral whole blood in the diagnosis, prognosis and monitoring of genetic and infectious disease in the human body. The process described herein requires a simple blood sample and is, therefore, non-invasive compared to conventional practices used to detect tissue specific disease, such as biopsies.

One object of the present invention is to provide a non-invasive method for the diagnosis, prognosis and monitoring of genetic and infectious disease in humans and animals.

In one embodiment of the present invention, there is provided a method for detecting expression of a gene in blood from a subject, comprising the steps of: a) quantifying RNA from a subject blood sample; and b) detecting expression of the gene in the quantified RNA, wherein the expression of the gene in quantified RNA indicates the expression of the gene in the subject blood.

In another embodiment of the present invention, there is provided a method for detecting expression of one or more genes in blood from a subject, comprising the steps of: a) obtaining a subject blood sample; b) extracting RNA from the blood sample; c) amplifying the RNA; d) generating expressed sequence tags (ESTs) from the amplified RNA product; and e) detecting expression of the genes in the ESTs, wherein the expression of the genes in the ESTs indicates the expression of the genes in the subject blood. Preferably, the genes are tissue-specific genes.

In still another embodiment of the present invention, there is provided a method for detecting expression of one or more genes in blood from a subject, comprising the steps of: a) obtaining a subject blood sample; b) extracting DNA fragments from the blood sample; c) amplifying the DNA fragments; and d) detecting expression of the genes in the amplified DNA product, wherein the expression of the genes in the amplified DNA product indicates the expression of the genes in the subject blood.

In yet another embodiment of the present invention, there is provided a method for monitoring a course of a therapeutic treatment in an individual, comprising the steps of: a) obtaining a blood sample from the individual; b) extracting RNA from the blood sample; c) amplifying the RNA; d) generating expressed sequence tags (ESTs) from the amplified RNA product; e) detecting expression of genes in the ESTs, wherein the expression of the genes is associated with the effect of the therapeutic treatment; and f) repeating steps a)-e), wherein the course of the therapeutic treatment is monitored by detecting the change of expression of the genes in the ESTs. Such a method may also be used for monitoring the onset of overt symptoms of a disease, wherein the expression of the genes is associated with the onset of the symptoms.

In still yet another embodiment of the present invention, there is provided a method for diagnosing a disease in a test subject, comprising the steps of: a) generating a cDNA library for the disease from a whole blood sample from a normal subject; b) generating expressed sequence tag (EST) profile from the normal subject cDNA library; c) generating a cDNA library for the disease from a whole blood sample from a test subject; d) generating EST profile from the test subject cDNA library; and e) comparing the test subject EST profile to the normal subject EST profile, wherein if the test subject EST profile differs from the normal subject EST profile, the test subject might be diagnosed with the disease.

In still yet another embodiment of the present invention, there is provided a kit for diagnosing, prognosing or predicting a disease, comprising: a) gene-specific primers; wherein the primers are designed in such a way that their sequences contain the opposing ends of two adjacent exons for the specific gene with the intron sequence excluded; and b) a carrier, wherein the carrier immobilizes the primer(s). Such a kit may be applied to a test subject whole blood sample to diagnose, prognose or predict a disease.

In yet another embodiment of the present invention, there is provided a kit for diagnosing, prognosing or predicting a disease, comprising: a) probes derived from a whole blood sample for a specific disease; and b) a carrier, wherein the carrier immobilizes the probes. Such a kit may be applied to a test subject whole blood sample to diagnose, prognose or predict a disease.

Furthermore, the present invention provides a cDNA library specific for a disease, wherein the cDNA library is generated from whole blood samples.

Other and further aspects, features, and advantages of the present invention will be apparent from the following description of the presently preferred embodiments of the invention. These embodiments are given for the purpose of disclosure.

BRIEF DESCRIPTION OF THE DRAWINGS

So that the matter in which the above-recited features, advantages and objects of the invention, as well as others which will become clear, are attained and can be understood in detail, more particular descriptions of the invention briefly summarized above may be had by reference to certain embodiments thereof which are illustrated in the appended drawing. These drawings form a part of the specification. It is to be noted, however, that the appended drawings illustrate preferred embodiments of the invention and therefore are not to be considered limiting in their scope.

FIG. 1 shows the following RNA samples prepared from human blood; FIG. 1A: Lane 1, Molecular weight marker; Lane 2, RT-PCR on APP gene; Lane 3, PCR on APP gene; Lane 4, RT-PCR on APC gene; Lane 5, PCR on APC gene; FIG. 1B: Lanes 1 and 2, RT-PCR and PCR of βMyHC, respectively; Lanes 3 and 4, RT-PCR of βMyHC from RNA prepared from human fetal and human adult heart, respectively; Lane 5, Molecular weight marker.

FIG. 2 shows quantitative RT-PCR analysis performed on RNA samples extracted from a drop of blood. Forward primer (5′-GCCCTCTGGGGACCTGAC-3′, SEQ ID No. 1) of exon 1 and reverse primer (5′-CCCACCTGCAGGTCCTCT-3″, SEQ ID No. 2) of exons 1 and 2 of insulin gene. Blood samples of 4 normal subjects were assayed. Lanes 1, 3, 5 and 7 represent overnight “fasting” blood sample and lanes 2, 4, 6 and 8 represent “non-fasting” samples.

FIG. 3 shows quantitative RT-PCR analysis performed on RNA samples extracted from a drop of blood. Lanes 1 and 2 represent normal healthy person and lane 3 represents late-onset diabetes (Type II) and lane 4 represents asymptomatic diabetes.

FIG. 4 shows multiple RT-PCR assay in a drop of blood. Primers were derived from insulin gene (INS), zinc-finger protein gene (ZFP) and house-keeping gene (GADH). Lane 1 represents normal person. Lane 2 represents late-onset diabetes and lane 3 represents asymptomatic diabetes.

FIG. 5 shows standardized levels of insulin gene (FIG. 5A) and ZFP gene (FIG. 5B) expressed in a drop of blood. The first three subjects were normal, second two subjects showed normal glucose tolerance, and the last subject had late onset diabetes type II. FIG. 5C shows standardized levels of insulin gene expressed in each fractionated cell from whole blood.

FIG. 6 shows the differential screening of human blood cell cDNA library with different cDNA probes of heart and brain tissue. FIG. 6A shows blood cell cDNA probes vs. adult heart cDNA probes. FIG. 6B shows blood cell cDNA probes vs. human brain cDNA probes.

FIG. 7 graphically shows the 1,800 unique genes in human blood and in the human fetal heart grouped into seven cellular functions.

DETAILED DESCRIPTION OF THE INVENTION

In accordance with the present invention, there may be employed conventional molecular biology, microbiology, and recombinant DNA techniques within the skill of the art. Such techniques are explained fully in the literature. See, e.g., Sambrook, Fritsch & Maniatis, “Molecular Cloning: A Laboratory Manual (1982); “DNA Cloning: A Practical Approach,” Volumes I and II (D. N. Glover ed. 1985); “Oligonucleotide Synthesis” (M. J. Gait ed. 1984); “Nucleic Acid Hybridization” [B. D. Hames & S. J. Higgins eds. (1985)]; “Transcription and Translation” [B. D. Hames & S. J. Higgins eds. (1984)]; “Animal Cell Culture” [R. I. Freshney, ed. (1986)]; “Immobilized Cells And Enzymes” [IRL Press, (1986)]; B. Perbal, “A Practical Guide To Molecular Cloning” (1984). Therefore, if appearing herein, the following terms shall have the definitions set out below.

A “cDNA” is defined as copy-DNA or complementary-DNA, and is a product of a reverse transcription reaction from an mRNA transcript. “RT-PCR” refers to reverse transcription polymerase chain reaction and results in production of cDNAs that are complementary to the mRNA template(s).

The term “oligonucleotide” is defined as a molecule comprised of two or more deoxyribonucleotides, preferably more than three. Its exact size will depend upon many factors which, in turn, depend upon the ultimate function and use of the oligonucleotide. The term “primer” as used herein refers to an oligonucleotide, whether occurring naturally as in a purified restriction digest or produced synthetically, which is capable of acting as a point of initiation of synthesis when placed under conditions in which synthesis of a primer extension product, which is complementary to a nucleic acid strand, is induced, i.e., in the presence of nucleotides and an inducing agent such as a DNA polymerase and at a suitable temperature and pH. The primer may be either single-stranded or double-stranded and must be sufficiently long to prime the synthesis of the desired extension product in the presence of the inducing agent. The exact length of the primer will depend upon many factors, including temperature, source of primer and the method used. For example, for diagnostic applications, depending on the complexity of the target sequence, the oligonucleotide primer typically contains 15-25 or more nucleotides, although it may contain fewer nucleotides. The factors involved in determining the appropriate length of primer are readily known to one of ordinary skill in the art.

As used herein, random sequence primers refer to a composition of primers of random sequence, i.e. not directed towards a specific sequence. These sequences possess sufficient complementary to hybridize with a polynucleotide and the primer sequence need not reflect the exact sequence of the template. “Restriction fragment length polymorphism” refers to variations in DNA sequence detected by variations in the length of DNA fragments generated by restriction endonuclease digestion.

A standard Northern blot assay can be used to ascertain the relative amounts of mRNA in a cell or tissue obtained from plant or other tissue, in accordance with conventional Northern hybridization techniques known to those persons of ordinary skill in the art. The Northern blot uses a hybridization probe, e.g. radiolabelled cDNA, either containing the full-length, single stranded DNA or a fragment of that DNA sequence at least 20 (preferably at least 30, more preferably at least 50, and most preferably at least 100 consecutive nucleotides in length). The DNA hybridization probe can be labelled by any of the many different methods known to those skilled in this art. The labels most commonly employed for these studies are radioactive elements, enzymes, chemicals which fluoresce when exposed to untraviolet light, and others. A number of fluorescent materials are known and can be utilized as labels. These include, for example, fluorescein, rhodamine, auramine, Texas Red, AMCA blue and Lucifer Yellow. A particular detecting material is anti-rabbit antibody prepared in goats and conjugated with fluorescein through an isothiocyanate. Proteins can also be labeled with a radioactive element or with an enzyme. The radioactive label can be detected by any of the currently available counting procedures. The preferred isotope may be selected from ³H, ¹⁴C, ³²P, ³⁵S, ³⁶Cl, ⁵¹Cr, ⁵⁷Co, ⁵⁸Co, ⁵⁹Fe, ⁹⁰Y, ¹²⁵I, ¹³¹I, and ¹⁸⁶Re. Enzyme labels are likewise useful, and can be detected by any of the presently utilized colorimetric, spectrophotometric, fluorospectrophotometric, amperometric or gasometric techniques. The enzyme is conjugated to the selected particle by reaction with bridging molecules such as carbodiimides, diisocyanates, glutaraldehyde and the like. Many enzymes which can be used in these procedures are known and can be utilized. The preferred are peroxidase, β-glucuronidase, β-D-glucosidase, β-D-galactosidase, urease, glucose oxidase plus peroxidase and alkaline phosphatase. U.S. Pat. Nos. 3,654,090, 3,850,752, and 4,016,043 are referred to by way of example for their disclosure of alternate labeling material and methods.

As used herein, “individual” refers to human subjects as well as non-human subjects. The examples herein are not meant to limit the methodology of the present invention to human subjects only, as the instant methodology is useful in the fields of veterinary medicine, animal sciences and such.

In one embodiment of the present invention, there is provided a method for detecting expression of a gene in blood from a subject, comprising the steps of: a) quantifying RNA from a subject blood sample; and b) detecting expression of the gene in the quantified RNA, wherein the expression of the gene in quantified RNA indicates the expression of the gene in the subject blood. An example of the quantifying method is by mass spectrometry.

In another embodiment of the present invention, there is provided a method for detecting expression of one or more genes in blood from a subject, comprising the steps of: a) obtaining a subject blood sample; b) extracting RNA from the blood sample; c) amplifying the RNA; d) generating expressed sequence tags (ESTs) from the amplified RNA product; and e) detecting expression of the genes in the ESTs, wherein the expression of the genes in the ESTs indicates the expression of the genes in the subject blood. Preferably, the subject is a fetus, an embryo, a child, an adult or a non-human animal. The genes are non-cancer-associated and tissue-specific genes. Still preferably, the amplification is performed by RT-PCR using random sequence primers or gene-specific primers.

In still another embodiment of the present invention, there is provided a method for detecting expression of one or more genes in blood from a subject, comprising the steps of: a) obtaining a subject blood sample; b) extracting DNA fragments from the blood sample; c) amplifying the DNA fragments; and d) detecting expression of the genes in the amplified DNA product, wherein the expression of the genes in the amplified DNA product indicates the expression of the genes in the subject blood.

In yet another embodiment of the present invention, there is provided a method for monitoring a course of a therapeutic treatment in an individual, comprising the steps of: a) obtaining a blood sample from the individual; b) extracting RNA from the blood sample; c) amplifying the RNA; d) generating expressed sequence tags (ESTs) from the amplified RNA product; e) detecting expression of genes in the ESTs, wherein the expression of the genes is associated with the effect of the therapeutic treatment; and f) repeating steps a)-e), wherein the course of the therapeutic treatment is monitored by detecting the change of expression of the genes in the ESTs. Such a method may also be used for monitoring the onset of overt symptoms of a disease, wherein the expression of the genes is associated with the onset of the symptoms. Preferably, the amplification is performed by RT-PCR, and the change of the expression of the genes in the ESTs is monitored by sequencing the ESTs and comparing the resulting sequences at various time points; or by performing single nucleotide polymorphism analysis and detecting the variation of a single nucleotide in the ESTs at various time points.

In still yet another embodiment of the present invention, there is provided a method for diagnosing a disease in a test subject, comprising the steps of: a) generating a cDNA library for the disease from a whole blood sample from a normal subject; b) generating expressed sequence tag (EST) profile from the normal subject cDNA library; c) generating a cDNA library for the disease from a whole blood sample from a test subject; d) generating EST profile from the test subject cDNA library; and e) comparing the test subject EST profile to the normal subject EST profile, wherein if the test subject EST profile differs from the normal subject EST profile, the test subject might be diagnosed with the disease.

In still yet another embodiment of the present invention, there is provided a kit for diagnosing, prognosing or predicting a disease, comprising: a) gene-specific primers; wherein the primers are designed in such a way that their sequences contain the opposing ends of two adjacent exons for the specific gene with the intron sequence excluded; and b) a carrier, wherein the carrier immobilizes the primer(s). Preferably, the gene-specific primers are selected from the group consisting of insulin-specific primers, atrial natriuretic factor-specific primers, zinc finger protein gene-specific primers, beta-myosin heavy chain gene-specific primers, amyloid precurser protein gene-specific primers, and adenomatous polyposis-coli protein gene-specific primers. Further preferably, the gene-specific primers are selected from the group consisting of SEQ ID Nos. 1 and 2; and SEQ ID Nos. 5 and 6. Such a kit may be applied to a test subject whole blood sample to diagnose, prognose or predict a disease by detecting the quantitative expression levels of specific genes associated with the disease in the test subject and then comparing to the levels of same genes expressed in a normal subject. Such a kit may also be used for monitoring a course of therapeutic treatment or monitoring the onset of overt symptoms of a disease.

In yet another embodiment of the present invention, there is provided a kit for diagnosing, prognosing or predicting a disease, comprising: a) probes derived from a whole blood sample for a specific disease; and b) a carrier, wherein the carrier immobilizes the probes. Such a kit may be applied to a test subject whole blood sample to diagnose, prognose or predict a disease by detecting the quantitative expression levels of specific genes associated with the disease in the test subject and then comparing to the levels of same genes expressed in a normal subject. Such a kit may also be used for monitoring a course of therapeutic treatment or monitoring the onset of overt symptoms of a disease.

Furthermore, the present invention provides a cDNA library specific for a disease, wherein the cDNA library is generated from whole blood samples.

The following examples are given for the purpose of illustrating various embodiments of the invention and are not meant to limit the present invention in any fashion.

EXAMPLE 1

Construction of a cDNA Library

RNA extracted from human tissues (including fetal heart, adult heart, liver, brain, prostate gland and whole blood) were used to construct unidirectional cDNA libraries. The first mammalian heart cDNA library was constructed as early as 1982. Since then, the methodology has been revised and optimal conditions have been developed for construction of human heart and hematopoietic progenitor cDNA libraries (Liew et al., 1984; Liew 1993, Claudio et al., 1998). Most of the novel genes which were identified by sequence annotation can now be obtained as full length transcripts.

EXAMPLE 2

Catalogue of Blood Cell ESTs

Random partial sequencing of expressed sequence tags (ESTs) of cDNA clones from the blood cell library was carried out to establish an EST database of blood. The known genes as derived from the ESTs were categorized into seven major cellular functions (Hwang, Dempsey et al., 1997).

EXAMPLE 3

Differential Screening of cDNA Library

cDNA probes generated from transcripts of each tissue were used to hybridize the blood cell cDNA clones (Liew et al., 1997). The “positive” signals which were hybridized with P-labelled cDNA probes were defined as genes which shared identity with blood and respective tissues. The “negative” spots which were not exposed to P-labelled cDNA probes were considered to be blood-cell-enriched or low frequency transcripts.

EXAMPLE 4

Reverse Transcriptase-polymerase Chain Reaction (RT-PCR) Assay

RNA extracted from samples of human tissue was used for RT-PCR analysis (Jin et al. 1990). Three pairs of forward and reverse primers were designed for human cardiac beta-myosin heavy chain gene (βMyHC), amyloid precurser protein (APP) gene and adenomatous polyposis-coli protein (APC) gene. The PCR products were also subjected to automated DNA sequencing to verify the sequences as derived from the specific transcripts of blood.

EXAMPLE 5

Detection of Tissue Specific Gene Expression in Human Blood Using RT-PCR

The beta-myosin heavy chain gene (βMyHC) transcript (mRNA) is known to be highly expressed in ventricles of the human heart. This sarcomeric protein is important for heart muscle contraction and its presence would not be expected in other non-muscle tissues and blood. In 1990, the gene for human cardiac βMyHC was completely sequenced (Liew et al. 1990) and was comprised of 41 exons and 42 introns.

The method of reverse transcription polymerase chain reaction (RT-PCR) was used to determine whether this cardiac specific mRNA is also present in human blood. A pair of primers was designed; the forward primer (SEQ ID No. 3) was on the boundary of exons 21 and 22, and the reverse primer (SEQ ID No. 4) was on the boundary of exons 24 and 25. This region of mRNA is only present in βMyHC and is not found in the alpha-myosin heavy chain gene (αMyHC).

A blood sample was first treated with lysing buffer and then undergone centrifuge. The resulting pellets were further processed with RT-PCR. RT-PCR was performed using the total blood cell RNA as a template. A nested PCR product was generated and used for sequencing. The sequencing results were subjected to BLAST and the identity of exons 21 to 25 was confirmed to be from βMyHC (FIG. 1A).

Using the same method just described, two other tissue specific genes—amyloid precursor protein (APP, forward primer, SEQ ID No. 7; reverse primer, SEQ ID No. 8) found in the brain and associated with Alzheimer's disease, and adenomatous polyposis coli protein (APC) found in the colon and rectum and associated with colorectal cancer (Groden et al. 1991; Santoro and Groden 1997)—were also detected in the RNA extracted from human blood (FIG. 1B).

EXAMPLE 6

Multiple RT-PCR Analysis on a Drop of Blood From a Normal/diseased Individual

A drop of blood was extracted to obtain RNA to carry out quantitative RT-PCR analysis. Specific primers for the insulin gene were designed: forward primer (5′-GCCCTCTGGGGACCTGAC-3′, SEQ ID No. 1) of exon 1 and reverse primer (5′-CCCACCTGCAGGTCCTCT-3″, SEQ ID No. 2) of exons 1 and 2 of insulin gene. Such reverse primer was obtained by deleting the intron between the exons 1 and 2. Blood samples of 4 normal subjects were assayed. It was found that the insulin gene is expressed in the blood and the quantitative expression of the insulin gene in a drop of blood is influenced by fasting and non-fasting states of normal healthy subjects (FIG. 2). This very low level of expression of the insulin gene reflects the phenotypic status of a person and strongly suggests that there is a physiological and pathological role for its expression, contrary to the basal or illegitimate theory of transcription suggested by Chelly et al. (1989) and Kimoto (1998).

Same quantitative RT-PCR analysis was performed using insulin specific primers on RNA samples extracted from a drop of blood from a normal healthy person, a person having late-onset diabetes (Type II) and a person having asymptomatic diabetes. It was found that the insulin gene is expressed differentially amongst subjects that are healthy, diagnosed as type II diabetic, and also in an asymptomatic preclinical patient (FIG. 3).

Similarly, specific primers for the atrial natriuretic factor (ANF) gene were designed (forward primer, SEQ ID No. 5; reverse primer, SEQ ID No. 6) and RT-PCR analysis was performed on a drop of blood. ANF is known to be highly expressed in heart tissue biopsies and in the plasma of heart failure patients. However, atrial natriuretic factor was observed to be expressed in the blood and the expression of the atrial natriuretic factor gene is significantly higher in the blood of patients with heart failure as compared to the blood of a normal control patient.

Specific primers for the zinc finger protein gene (ZFP, forward primer, SEQ ID No. 9; reverse primer, SEQ ID No. 10) were also designed and RT-PCR analysis was performed on a drop of blood. ZFP is known to be high in heart tissue biopsies of cardiac hypertrophy and heart failure patients. In the present study, the expression of ZFP was observed in the blood as well as differential expression levels of ZFP amongst the normal, diabetic and asymptomatic preclinical subjects (FIG. 4); although neither of the non-normal subjects has been specifically diagnosed as suffering from cardiac hypertrophy and/or heart failure, the higher expression levels of the ZFP gene in their blood may indicate that these subjects are headed in that general direction.

It was hypothesized that a housekeeping gene such as glyceraldehyde dehydrogenase (GADH) which is required and highly expressed in all cells would not be differentially expressed in the blood of normal vs. disease subjects. This hypothesis was confirmed by RT-PCR using GADH specific primers (FIG. 4). Thus, GADH is useful as an internal control.

Standardized levels of insulin gene or ZFP gene expressed in a drop of blood were estimated using a housekeeping gene as an internal control relative to insulin or ZFP expressed (FIGS. 5A & 5B). The levels of insulin gene expressed in each fractionated cell from whole blood were also standardized and shown in FIG. 5C.

EXAMPLE 7

Human Blood Cell cDNA Library

In order to further substantiate the present invention, differential screening of the human blood cell cDNA library was conducted. cDNA probes derived from human blood, adult heart or brain were respectively hybridized to the human blood cDNA library clones. As shown in FIG. 7, more than 95% of the “positively” identified clones are identical between the blood and other tissue samples.

DNA sequencing of randomly selected clones from the human whole blood cell cDNA library was also performed. This allowed information regarding the cellular function of blood to be obtained concurrently with gene identification. More than 20,000 expressed sequence tags (ESTs) have been generated and characterized to date, 17.6% of which did not result in a statistically significant match to entries in the GenBank databases and thus were designated as “Novel” ESTs. These results are summarized in FIG. 7 together with the seven cellular functions related to percent distribution of known genes in blood and in the fetal heart.

From 20,000 ESTs, 1,800 have been identified as known genes which may not all appear in the hemapoietic system. For example, the insulin gene and the atrial natriuretic factor gene have not been detected in these 20,000 ESTs but their transcripts were detected in a drop of blood, strongly suggesting that all transcripts of the human genome can be detected by performing RT-PCR analysis on a drop of blood.

In addition, approximately 400 novel genes have been identified from the 20,000 ESTs characterized to date, and these will be subjected to full length sequencing and open reading frame alignment to reduce the actual number of novel ESTs prior to screening for disease markers.

Analysis of the approximately 6,283 ESTs which have known matches in the GenBank databases revealed that this dataset represents over 1,800 unique genes. These genes have been catalogued into seven cellular functions. Comparisons of this set of unique genes with ESTs derived from human brain, heart, lung and kidney demonstrated a greater than 50% overlap in expression (Table 1).

TABLE 1
Overlap of Genes Expressed in Blood*

Tissues	ESTs**	Overlap in Blood

brain	134,000	60%
heart	65,000	59%
lung	60,200	58%
kidney	32,300	54%
*Estimated from limited known genes of about 1,800 as derived from the database of 6,297 ESTs from human blood cell library.
**Obtained from the National Centre of Biotechnology Information (NCBI), U.S.A.

EXAMPLE 8

Blood Cell ESTs

The results from the differential screening clearly indicate that the transcripts expressed in the whole blood are reflective of genes expressed in all cells and tissues of the body. More than 95% of detectable spots were identical from two different tissues. The remaining 5% of spots may represent cell- or tissue-specific transcripts; however, results obtained from partial sequencing to generate ESTs of these clones revealed most of them not to be cell- or tissue-specific transcripts. Therefore, the negative spots are postulated to be reflective of low abundance transcripts in the tissue from which the cDNA probes were derived.

An alternative approach that was employed to identify transcripts expressed at low levels is the large-scale generation of expressed sequence tags (ESTs). There is substantial evidence regarding the efficiency of this technology to detect previously characterized (known) and uncharacterized (unknown or novel) genes expressed in the cardiovascular system (Hwang & Dempsey et al. 1997). In the present invention, 20,000 ESTs have been produced from a human blood cell cDNA library and resulted in the identification of approximately 1,800 unique known genes (Table 2)

In the most recent GenBank release, analysis of more than 300,000 ESTs in the database (dbESTs) generated more than 48,000 gene clusters which are thought to represent approximately 50% of the genes in the human genome. Only 4,800 of the dbESTs are blood-derived. In the present invention, 20,000 ESTs have been obtained to date from a human blood cDNA library, which provides the world's most informative database with respect to blood cell transcripts. From the limited amount of information generated so far (i.e. 1,800 unique genes), it has already been determined that more than 50% of the transcripts are found in other cells or tissues of the human body (Table 2). Thus, it is expected that by increasing the number of ESTs generated, more genes will be identified that have an overlap in expression between the blood and other tissues. Furthermore, the transcripts for several genes which are known to have tissue-restricted patterns of expression (i.e. βMyHC, APP, APC, ANF, ZFP) have also been demonstrated to be present in blood.

Most recently, a cDNA library of human hematopoietic progenitor stem cells has also been constructed. From the limited set of 1,000 ESTs, there are at least 200 known genes that are shared with other tissue related genes (Claudio et al. 1998).

Table 2 demonstrates the expression of known genes of specific tissues in blood cells. Previously, only the presence of “housekeeping” genes would have been expected. Additionally, the presence of at least 25 of the currently known 500 genes corresponding to molecular drug targets was detected. These molecular drug targets are used in the treatment of a variety of diseases which involve inflammation, renal and cardiovascular function, neoplastic disease, immunomodulation and viral infection (Drews & Ryser, 1997). It is expected that additional novel ESTs will represent future molecular drug targets.

TABLE 2
Comparison of 1,800 Unique Genes Identified in the Blood Cell
cDNA Library to Genes Previously Identified in Specific Tissues

No. of

Accession

Tissue Distribution

Gene Identification	ESTs	No.	Bl	Br	H	K	Li	Lu

100 kDa coactivator	2	U22055		+				+
10 kD protein (BC10)	2	AF053470		+	+		+	+
14-3-3 epsilon	2	U54778		+	+			+
14-3-3 protein	11	U28964		+	+		+
15 kDa selenoprotein	1	AF051894		+	+			+
(SEP15)
1-phosphatidylinositol-4-	1	S78798
phosphate 5-kinase
isoform C
23 kD highly basic protein	21	X56932	+	+	+	+	+	+
2-5A-dependent RNase	1	L10381
2′-5′oligoadenylate	4	M87284	B
synthetase 2 (OAS2)
26S proteasome subunit 11	1	AF086708
36 kDa phosphothyrosine	2	AJ223280	T		+
protein
3-7 gene product (non-	1	D64159
exact 86% aa)
3-phosphoglycerate	1	AF006043	T	+	+			+
dehydrogenase (PGAD)
3-prime-phosphoadenosine	2	U53447	+	+	+	+		+
5-prime-phosphosulfate
synthase 1 (PAPSS1)
46 kd mannose 6-	1	X56257
phosphate receptor
(MPR46) (low match)
5-aminoimidazole-4-	1	D89976
carboxamide ribonucleotide
transformylase
5′-nucleotidase	3	D38524	T	+			+
6-phosphofructo-2-	1	D49818		+
kinase/fructose-2,6-
biphosphatase 4 (PFKFB4)
6-phosphofructo-2-	1	AF041829
kinase/fructose-2,6-
bisphosphatase (PF2K)
71 kd heat shock cognate	23	Y00371
protein hsc70
76 kDa membrane protein	2	U81006		+	+	+	+	+
(P76)
8-oxoguanine DNA	1	U96710	B				+	+
glycosylase (OGG1)
a disintegrin and	1	AF009615	T				+
metalloprotease domain 10
(ADAM10)
a disintegrin and	1	D26579	B	+
metalloprotease domain 8
(ADAM8)
A kinase anchor protein 95	2	Y11997	B, T		+			+
(AKAP95)			activated
A kinase anchor protein,	2	X97335		+	+	+		+
149 kD (AKAP149)
A4 differentiation-	1	U93305
dependent protein (A4),
triple LIM domain protein
(LMO6), and synaptophysin
(SYP); calcium channel
alpha-1 subunit
(CACNA1F)
ABL and putative M8604	1	U07561
Met protein
Absent in melanoma 1	1	U83115	+	+				+
(AIM1)
accessory proteins	2	Z31696		+	+
BAP31/BAP29
(DXS1357E)
acetyl-Coenzyme A	2	X12966	+	+	+	+	+	+
acyltransferase
(peroxisomal 3-oxoacyl-
Coenzyme A thiolase)
(ACAA)
acetyl-Coenzyme A	1	D88152	T lymphoma	+	+
transporter (ACATN)
acidic 82 kDa protein	4	U15552
acidic protein rich in	1	Y07969	B	+	+		+	+
leucines (SSP29)
Aconitase 2, mitochondrial	1	U80040	+	+	+	+		+
(ACO2)
actin binding protein	1	AF059569
MAYVEN
actin, beta (ACTB)	158	X04098	T, B	+	+		+
actin, beta (ACTB) (non-	1	M10277
exact, low match 73%)
actin, gamma (low score)	1	K00791
actin, gamma 1 (ACTG1)	4	X04098	+	+	+	+	+	+	high in many libraries
actin-binding LIM protein	4	D31883		+	+	+		+
(ABLIM)
Actinin, alpha 1 (ACTN1)	8	M95178		+	+	+		+
actinin, alpha 4 (ACTN4)	1	D89980		+	+		+
activated p21cdc42Hs	1	L13738	B	+				+
kinase (ACK)
activated RNA polymerase	1	X79805	+	+	+	+		+
II transcription cofactor 4
(PC4)
activating transcription	1	X55544			+
factor 1 (ATF1)
activating transcription	1	X15875		+	+		+
factor 2 (ATF2)
activating transcription	2	M86842					+	+
factor 4 (tax-responsive
enhancer element B67)
(ATF4)
active BCR-related gene	1	U01147	+	+	+	+		+
(ABR)
acyl-CoA oxidase AOX	1	U03254
acyl-Coenzyme A	2	M16827
dehydrogenase, C-4 to C-
12 straight chain (ACADM)
acyl-Coenzyme A	3	D43682	+	+	+	+	+	+
dehydrogenase, very long
chain (ACADVL)
acyloxyacyl hydrolase	3	M62840	T		+		+	+
(neutrophil) (AOAH)
adaptin, delta (ADTD)	2	U91930		+	+		+
adaptin, delta (ADTD) (non-	1	AC005328
exact 59%)
adaptin, gamma (ADTG)	1	Y12226		+	+	+		+
adaptor complex sigma3B	2	X99459		+		+		+
(AP3S3)
adaptor protein p150	1	Y08991
adducin 1 (alpha) (ADD1)	2	L07261		+	+		+
adducin 1 (alpha) (add1)	3	L29296	+	+	+	+		+
adducin 3 (gamma) (ADD3)	3	U37122	B, W	+	+		+	+
adenine nucleotide	2	M57424		+	+		+
translocator 2 (fibroblast)
(ANT2)
adenine nucleotide	1	J02683
translocator 2 (fibroblast)
(ANT2) (non-exact 81%)
adenine nucleotide	1	J02683
translocator 2 (fibroblast)
(ANT2) (non-exact, 79%)
adenine nucleotide	1	J02683
translocator 2 (fibroblast)
(ANT2) (non-exact, 86%)
adenine nucleotide	3	J03592		+	+		+	+
translocator 3 (liver)
(ANT3)
adenosine deaminase,	6	U18121		+	+		+
RNA-specific (ADAR)
adenylate cyclase 3	2	AF033861		+	+	+	+	+
(ADCY3)
adenylate cyclase 7	1	D25538
(ADCY7)
adenylate kinase 2 (AK2)	2	U39945		+	+		+	+
adenylate kinase 3 (AK3)	1	X60673
(non-exact, 67%)
adenylyl cyclase-	28	M98474	T		+		+
associated protein (CAP)
adipose differentiation-	1	X97324			+		+	+
related protein; adipophilin
(ADFP)
ADP-ribosylation factor 1	13	M84326		+	+		+	+
(ARF1)
ADP-ribosylation factor 3	2	M33384		+	+		+
(ARF3)
ADP-ribosylation factor 4	1	M36341	T lymphoma	+	+			+
(ARF4)
ADP-ribosylation factor 5	1	M57567			+	+	+	+
(ARF5)
ADP-ribosylation factor	1	L04510		+
domain protein 1, 64 kD
(ARFD1)
ADP-ribosyltransferase	4	M32721	+	+	+	+	+	+
(NAD+; poly (ADP-ribose)
polymerase) (ADPRT)
adrenergic, beta, receptor	2	X61157	B	+			+
kinase 1 (ADRBK1)
adrenoleukodystrophy-like	1	AJ000327
1 (ALDL1)
AE-binding protein 1	1	D86479
(AEBP1) (non-exact, 62%)
AF-17	1	U07932
A-gamma-globin	1	V00514
A-gamma-globin	1	J00176
(chromosome 11 allele)
agammaglobulinaemia	1	U78027
tyrosine kinase (ATK)
AHNAK nucleoprotein	4	M80899	+	+	+	+		+
(desmoyokin) (AHNAK)
alanyl (membrane)	1	X13276			+		+
aminopeptidase
(aminopeptidase N,
aminopeptidase M,
microsomal
aminopeptidase, CD13,
p150) (ANPEP)
alcohol dehydrogenase 5	1	M29872
(class III), chi polypeptide
(ADH5)
aldehyde dehydrogenase	1	AF003341		+			+	+
1, soluble (ALDH1)
aldehyde dehydrogenase	2	U75286
10 (fatty aldehyde
dehydrogenase) (ALDH10)
aldehyde reductase 1 (low	3	J04795	B	+	+	+	+
Km aldose reductase)
(ALDR1)
aldo-keto reductase family	2	J04794	B	+	+		+
1, member A1 (aldehyde
reductase) (AKR1A1)
aldo-keto reductase family	1	D17793		+	+	+		+
1, member C3 (3-alpha
hydroxysteroid
dehydrogenase, type II)
(AKR1C3)
aldo-keto reductase family	1	Y16675		+	+		+	+
7, member A2 (aflatoxin
aldehyde reductase)
(AKR7A2)
aldolase A, fructose-	7	X12447		+	+		+
bisphosphate (ALDOA)
aldolase C, fructose-	2	X05196		+	+		+
bisphosphate (ALDOC)
alkaline phosphatase,	1	4502062
liver/bone/kidney (ALPL)
ALL-1 (=L04731; L04284	4	Z69780
HRX)
alpha mannosidase II	1	D55649		+			+
isozyme
alpha thalassemia/mental	3	U75653	+	+	+	+		+
retardation syndrome X-
linked (ATRX)
alpha-2 macroglobulin	1	Z11711
alpha-2-globin	2	V00516
alpha-2-macroglobulin	1	U06985
receptor/lipoprotein
receptor protein
(A2MR/LRP)
alpha-polypeptide of N-	1	M13520
acetyl-alpha-
glucosaminidase (HEXA)
alpha-spectrin	1	X86901
alpha-subunit of Gi2 a	1	X07854
(GTP-binding signal
transduction protein)
aminin receptor 1 (67 kD);	2	J03799	T	+	+		+	+
Ribosomal protein SA
(LAMR1)
aminolevulinate, delta-,	1	X64467		+
dehydratase (ALAD)
amino-terminal enhancer of	2	X73358	+	+	+	+		+
split (AES)
amino-terminal enhancer of	3	U04241	B	+	+		+	+
split (AES)
AMP deaminase isoform L	8	M91029		+				+
(AMPD2)
amphiphysin (Stiff-Mann	1	U07616	B	+				+
syndrome with breast
cancer 128 kD autoantigen)
(AMPH)
amphiphysin (Stiff-Mann	1	U07616
syndrome with breast
cancer 128 kD autoantigen)
(AMPH)(non-exact, 68%)
amphiphysin (Stiff-Mann	1	U07616
syndrome with breast
cancer 128 kD autoantigen)
(AMPH)(non-exact, 68%)
amphiphysin II	4	U87558		+	+		+
amphiphysin II (67% aa	1	AF068915
amphiphysin?)
amphiphysin II (non-exact	1	AF001383
69% aa)
amphiphysin-like (AMPHL)	1	U68485		+	+
amphiphysin-like (AMPHL)	1	AF068918
(low match)
AMY-1	1	D50692	B, T				+
amyloid beta (A4)	1	L77864		+	+	+		+
precursor protein-binding,
family B, member 1 (Fe65)
(APBB1)
amyloid beta (A4)	6	L27631	T lymphoma	+	+		+	+
precursor-like protein 2
(APLP2)
ankyrin 3, node of Ranvier	1	U43965
(ankyrin G) (ANK) (non-
exact, 50%)
annexin I (lipocortin I)	1	X05908		+	+	+		+
(ANX1)
annexin II	1	D28364
annexin II (lipocortin II;	7	D00017	+	+	+	+	+	+	high in many libraries
calpactin I, heavy
polypeptide) (ANX2)
annexin IV (placental	1	M19383		+	+	+	+	+
anticoagulant protein II)
(ANX4)
annexin V (endonexin II)	2	M21731		+	+	+		+
(ANX5)
annexin V (endonexin II)	1	M19384		+	+	+		+
(ANXV)
annexin VI (p68) (ANX6)	6	Y00097		+	+	+		+
annexin VII (synexin)	1	J04543		+	+	+		+
(ANX7)
antigen identified by	2	M16279		+	+	+		+
monoclonal antibodies
12E7, F21 and O13 (MIC2)
antigen identified by	3	J02939		+	+	+	+	+
monoclonal antibodies 4F2,
TRA1.10, TROP4, and T43
(MDU1)
antigen TQ1	1
anti-oxidant protein 2 (non-	1	D14662		+	+	+	+	+
selenium glutathione
peroxidase, acidic calcium-
independent phospholipase
A2) (KIAA0106)
APEX nuclease	5	X66133		+	+		+	+
(multifunctional DNA repair
enzyme) (APEX)
Apolipoprotein L (APOL)	1	Z82215
(59% aa)
apoptosis inhibitor 1 (API1)	1	L49431		+	+	+	+	+
apoptosis inhibitor 4	1	U75285	B, W	+	+		+
(survivin) (API4)
apoptosis inhibitor 5 (API5)	1	U83857	T lymphoma	+			+
apoptosis specific protein	1	Y11588	B	+			+	+
(ASP)
apoptotic protease	1	AF013263	B	+	+		+
activating factor (APAF1)
aquaporin 3 (AQP3)	1	AB001325	T				+
aquaporin 9 (AQP9)	7	AB008775	T activated				+
arachidonate 12-	1	M58704	T				+	+
lipoxygenase (ALOX12)
arachidonate 5-	3	X52195	+	+		+		+
lipoxygenase-activating
protein (ALOX5AP)
ariadne homolog (ARI)	1	AJ009771	+	+	+	+		+
ariadne-2 (D. melanogaster)	1	AF099149	+	+	+	+		+
homolog
(all-trans retinoic acid
inducible RING finger)
(ARI2)
ARP1 (actin-related protein	1	X82206		+			+
1, yeast) homolog A
(centractin alpha)
(ACTR1A)
ARP2 (actin-related protein	9	AF006082		+	+		+	+
2, yeast) homolog (ACTR2)
ARP2/3 protein compex	5	AF006085	T activated, W	+	+		+
subunit 34 (ARC34)
Arp2/3 protein compex	6	AF006084	monocyte	+	+		+
subunit p41 (ARC41)			stimulated
Arp2/3 protein compex	1	AF006084
subunit p41 (ARC41)) (low
match)
Arp2/3 protein complex	20	AF017807		+	+		+	+
subunit p16 (ARC16)
Arp2/3 protein complex	2	AF006087		+	+		+	+
subunit p20 (ARC20)
Arp2/3 protein complex	3	AF006086	W				+	+
subunit p21(ARC21)
ARP3 (actin-related protein	11	AF006083	W		+		+	+
3, yeast) homolog (ACTR3)
arrestin, beta 2 (ARRB2)	1	AF106941	B, T, W	+	+		+
arsA (bacterial) arsenite	1	AF047469	B, T	+			+
transporter, ATP-binding,
homolog 1 (ASNA1)
aryl hydrocarbon receptor	2	AF044288	B	+	+		+
nuclear translocator-like
(ARNTL)
aryl hydrocarbon receptor-	1	U31913	+	+	+	+		+
interacting protein (AIP)
arylsulfatase A (ARSA)	1	X52151	T activated	+			+
asialoglycoprotein receptor	1	M11025					+	+
2 (ASGR2)
asparaginyl-tRNA	3	D84273		+	+		+
synthetase (NARS)
aspartyl-tRNA synthetase	1	J05032	B	+	+		+
(DARS)
ataxia telangiectasia	1	U82828	B, T		+		+
mutated (includes
complementation groups A,
C and D) (ATM)
ataxin-2-like protein A2LP	1	AF034373	B, T	+	+			+
(A2LG)			activated
ATF6	1	AF005887		+			+
ATP binding cassette	1	U88667
transporter (ABCR) (non-
exact 80%)
ATP synthase (F1-ATPase)	1	X59066
alpha subunit,
mitochondrial
ATP synthase beta subunit	1	M19482
gene
ATP synthase, H+	1	X60221	+	+	+	+		+
transporting, mitochondrial
F0 complex, subunit b,
isoform 1 (ATP5F1)
ATP synthase, H+	1	X69907	T activated	+	+		+	+
transporting, mitochondrial
F0 complex, subunit c
(subunit 9), isoform 1
(ATP5G1)
ATP synthase, H+	3	D14710
transporting, mitochondrial
F1 complex, alpha subunit,
isoform 1, cardiac muscle
(ATP5A1)
ATP synthase, H+	1	D14710
transporting, mitochondrial
F1 complex, alpha subunit,
isoform 1, cardiac muscle
(ATP5A1) (low match)
ATP synthase, H+	2	M27132
transporting, mitochondrial
F1 complex, beta
polypeptide (ATP5B)
ATP synthase, H+	1	D16563	W	+	+	+	+
transporting, mitochondrial
F1 complex, gamma
polypeptide 1 (ATP5C1)
ATP synthase, H+	1	AF092124	+	+	+	+	+	+
transporting, mitochondrial
F1F0, subunit g (ATP5JG)
ATP/GTP-binding protein	2	U73524	+	+	+	+		+
(HEAB)
ATPase, Ca++	5	Z69881		+
transporting, ubiquitous
(ATP2A3)
ATPase, H+ transporting,	2	D89052	+	+	+	+		+
lysosomal (vacuolar proton
pump) 21 kD (ATP6F)
ATPase, H+ transporting,	1	X76228		+	+	+		+
lysosomal (vacuolar proton
pump) 31 kD (ATP6E)
ATPase, H+ transporting,	5	X69151		+	+	+		+
lysosomal (vacuolar proton
pump) 42 kD; Vacuolar
proton-ATPase,
subunit C; V-ATPase,
subunit C (ATP6D)
ATPase, H+ transporting,	3	L09235		+		+
lysosomal (vacuolar proton
pump), alpha polypeptide,
70 kD, isoform 1 (ATP6A1)
ATPase, H+ transporting,	6	X62949	+	+	+	+		+
lysosomal (vacuolar proton
pump), beta polypeptide,
56/58 kD, isoform 2
(ATP6B2)
ATPase, H+ transporting,	2	AF038954	+	+	+	+		+	high in testis
lysosomal (vacuolar proton
pump), member J (ATP6J)
ATPase, H+ transporting,	1	D16469		+	+	+		+
lysosomal (vacuolar proton
pump), subunit 1 (ATP6S1)
ATP-binding cassette 50	1	AF027302	+	+	+	+		+
(TNF-alpha stimulated)
(ABC50)
ATP-binding cassette	1	AF047690
protein M-ABC1
(mitochondrial)
ATP-dependent RNA	1	AJ010840	T lymphoma		+		+
helicase
autoantigen (Hs.75528)	2	L05425	T activated		+
autoantigen (Hs.75528)	1	L05425
(non-exact 84%)
autoantigen (Hs.75682)	1	U17474	B	+				+
autoantigen La/SS-B	1	Z35127
axin (AXIN1)	1	AF009674	T	+
axonemal dynein heavy	1	AJ000522						+
chain (DNAH17)
BAI1-associated protein 3	1	AB017111
(BAIAP3) (non-exact 54%)
basement membrane-	1	AF044896
induced gene (ICB1)
basic leucine zipper	2	U79751
nuclear factor 1 (JEM-1)
(BLZF1)
basic transcription factor 3	5	X74070	+	+	+	+	+	+
(BTF3)
basigin (BSG)	1	L10240		+			+
BC-2	1	AF042384	B		+	+	+
B-cell CLL/lymphoma 6	1	U00115		+	+
(zinc finger protein 51)
(BCL6)
B-cell translocation gene 1,	1	X61123			+			+
anti-proliferative (BTG)
BCL2/adenovirus E1B	1	U15173	B	+			+	+
19 kD-interacting protein 2
(BNIP2)
BCL2/adenovirus E1B	2	AF067396		+	+	+		+
19 kD-interacting protein 3-
like (BNIP3L)
beclin 1 (coiled-coil,	1	AF077301	B	+	+		+
myosin-like BCL2-
interacting protein)
(BECN1)
beta-1,2-N-	2	U15128
acetylglucosaminyltransferase
II (MGAT2)
beta-2-microglobulin (B2M)	63	S82297	+	+	+	+	+	+	high in invasive
									prostate tumor
beta-hexosaminidase alpha	1	M16411
chain (HEXA)
beta-tubulin	7	V00599	+	+	+	+	+	+	high in many libraries
beta-tubulin (non-exact,	1	AF070561
76%)
beta-tubulin, pseudogene	1	J00315
BING4	1	Z97184
biotinidase (BTD) (non-eact	1	U03274
62%)
biotinidase (BTD) (non-	1	U03274
exact 70%)
biotinidase (BTD) (non-	1	U03274
exact, 56%)
BIOTINIDASE	1	P43251
PRECURSOR
biphenyl hydrolase-like	1	X81372		+			+
(serine hydrolase) (BPHL)
bone marrow stromal cell	1	D21878					+
antigen 1 (BST1)
box-dependent myc-	1	AF043900
interacting protein isoform
BIN1-10 (BIN1)
box-dependent myc-	1	AF043900
interacting protein isoform
BIN1-10 (BIN1) (non-exact,
64%)
brain my047 protein	1	AF063605	T	+	+		+
branched chain keto acid	3	Z14093	T	+	+		+
dehydrogenase E1, alpha
polypeptide (maple syrup
urine disease) (BCKDHA)
BRCA1 associated protein-	1	D87462	+	+	+	+
1 (ubiquitin carboxy-
terminal hydrolase) (BAP1)
BRCA1, Rho7 and vatl	1	L78833
genes, and ipf35
breakpoint cluster region	2	AF044773		+	+
protein, uterine leiomyoma,
1; barrier to autointegration
factor (BCRP1)
breakpoint cluster region	2	AF044774		+	+		+	+
protein, uterine leiomyoma,
2 (BCRP2)
breast cancer anti-estrogen	1	U92715
resistance 3 (BCAR3)
(non-exact 73%)
bromodomain-containing	2	M91585		+
protein, 140 kD (peregrin)
(BR140)
Bruton's	1	U13424
agammaglobulinemia
tyrosine kinase (Btk)
Bruton's tyrosine kinase	1	U78027
(BTK)
Bruton's tyrosine kinase	1	U78027
(BTK), alpha-D-
galactosidase A (GLA),
L44-like ribosomal protein
(L44L) and FTP3 (FTP3)
BS4	1	AF108083
BTG2 (BTG2)	6	Y09943	+	+	+	+		+
BTK region clone ftp	1	U78027	+	+	+	+		+
BTK region clone ftp-3	1	U01923		+	+		+
BUB3 (budding uninhibited	4	AF053304	+	+	+	+		+
by benzimidazoles 3,
yeast) homolog (BUB3)
butyrate response factor 1	4	X79067	+	+	+	+		+
(EGF-response factor 1)
(BRF1)
butyrophilin (BTF1)	7	U90543		+	+		+
butyrophilin like receptor	1	AB020625.1
CAG repeat containing	2	U80744		+	+
(CTG4A)
CAGH32	2	U80743		+	+		+
calcium channel, voltage-	1	M83566
dependent, L type, alpha
1D subunit (CACNA1D)
(low match)
calcium/calmodulin-	1	AF069765		+	+	+		+
dependent protein kinase
(CaM kinase) II gamma
(CAMK2G)
calcium/calmodulin-	1	AF101264	B	+	+		+
dependent protein kinase
kinase (KIAA0787)
calmodulin (=M19311)	7	D45887
calmodulin 1	6	M27319	B	+	+		+	+
(phosphorylase kinase,
delta) (CALM1)
calnexin (CANX)	3	M94859	T	+			+	+
calpain, large polypeptide	5	X04366		+	+		+	+
L1 (CAPN1)
calpain, large polypeptide	5	M23254		+	+
L2 (CANP2)
calpain, small polypeptide	1	X04106		+	+		+	+
(CAPN4)
calpastatin CAST	3	D16217					+
Calponin 2	2	D83735		+		+		+
calponin 2 (CNN2)	1	D83735	B, T	+			+
calponin 2 (CNN2) (low	1	D83735
score)
calumenin (CALU)	3	AF013759	B		+		+	+
cAMP response element-	4	L05912
binding protein CRE-Bpa
(H_GS165L15.1)
cAMP-dependent protein	1	M90360
kinase type II (Ht31)
canicular multispecific	1	AF009670				+	+	+
organic anion transporter
(CMOAT2)
capping protein (actin	6	U56637	B, T		+			+
filament) muscle Z-line,
alpha 1 (CAPZA1)
capping protein (actin	2	U03269	B	+	+
filament) muscle Z-line,
alpha 2 (CAPZA2)
capping protein (actin	1	U03271	+	+	+	+		+
filament) muscle Z-line,
beta (CAPZB)
capping protein (actin	8	M94345	+	+		+		+
filament), gelsolin-like
(CAPG)
carbamoyl-phosphate	1	D78586	+	+	+	+		+
synthetase 2, aspartate
transcarbamylase, and
dihydroorotase (CAD)
carbonic anhydrase V,	1	L19297		+			+
mitochondrial (CA5)
carboxypeptidase D (CPD)	3	U65090	B	+	+
carnitine/acylcarnitine	1	Y10319		+	+		+
translocase (CACT)
Cas-Br-M (murine)	2	X57110					+
ecotropic retroviral
transforming sequence
(cbl)
casein kinase 1, alpha 1	1	L37042	+	+	+	+		+
(CSNK1A1)
casein kinase 2, alpha 1	2	M55265	B	+			+	+
polypeptide (CSNK2A1)
casein kinase I gamma 3L	1	AF049090.1
(CSNK1G3L)
casein kinase II alpha	1	X69951
subunit(=S72393)
CASP8 and FADD-like	4	AF015450		+	+	+	+	+
apoptosis regulator
(CFLAR)
caspase 1, apoptosis-	7	U13697	+			+
related cysteine protease
(interleukin 1, beta,
convertase) (CASP1)
caspase 10, apoptosis-	1	U60519	B, T				+
related cysteine proteas			activated, T
(CASP10)			lymphoma
caspase 3, apoptosis-	3	U13737	B, T	+	+	+	+
related cysteine protease
(CASP3)
caspase 4, apoptosis-	6	U25804	+	+	+	+		+
related cysteine protease
(CASP4)
caspase 5, apoptosis-	1	U28015			+
related cysteine protease
(CASP5)
caspase 8, apoptosis-	2	X98173		+		+		+
related cysteine protease
(CASP8)
caspase 9, apoptosis-	1	U56390	B			+	+
related cysteine protease
(CASP9)
catalase (CAT)	5	X04076	B	+	+		+
catechol-O-	1	M65213		+	+		+
methyltransferase (COMT)
catenin (cadherin-	6	D14705		+	+
associated protein), alpha
1 (102 kD) (CTNNA1)
cathelicidin antimicrobial	1	X89658	B
peptide (CAMP)
cathepsin B (CTSB)	4	L16510			+		+	+
cathepsin C (CTSC)	3	U79415		+	+	+		+
cathepsin D (lysosomal	4	M11233		+	+		+
aspartyl protease) (CTSD)
cathepsin E (CTSE)	1	J05036					+
cathepsin G (CTSG)	1	M16117	T, W		+
cathepsin S (CTSS)	34	M86553	B, Monocyte				+	+
			stimulated,
			T lymphoma
cathepsin W (lymphopain)	4	AF013611						+
(CTSW)
CBF1 interacting	1	AF098297
corepressor CIR (=U03644
recepin)
CCAAT/enhancer binding	3	X87248		+	+	+		+
protein (C/EBP), alpha
(CEBPA)
CCAAT/enhancer binding	1	S63168			+		+	+
protein (C/EBP), delta
(CEBPB)
CCAAT-box-binding	2	M37197	T lymphoma			+	+
transcription factor (CBF2)
CCR5 receptor (CCR5)	1	AF011504
(non-exact?)
CD14 antigen (CD14)	11	M86511	+	+	+	+		+
CD18 (=M95293)	4	X64071
CD1C antigen, c	2	M28827						+
polypeptide (CD1C)
CD2 antigen (cytoplasmic	1	AF104222
tail)-binding protein 2
(CD2BP2)
CD2 antigen (p50), sheep	4	M14362	+		+	+		+
red blood cell receptor
(CD2)
CD2 cytoplasmic tail-	2	AF038602					+
binding protein 1 (CD2BP1)
CD20 antigen (CD20)	1	X12530
CD20 receptor (S7)	1	X07203
CD22 antigen (CD22)	1	U62631	B
CD24 signal transducer	1	M58664
CD33 antigen (gp67)	1	M23197					+
(CD33)
CD33 antigen-like 2; OB	1	U71383
binding protein-2 (CD33L2)
(non-exact, 68%)
CD33L2 (61% aa)	1	D86359
CD36 antigen (collagen	7	M98398	T lymphoma		+		+	+
type I receptor,
thrombospondin receptor)
(CD36)
CD37 antigen (CD37)	5	X14046	+	+		+		+
CD38 alt	1	D84277
CD39 antigen (CD39)	1	U87967	B	+			+	+
CD3D antigen, delta	1	X03934			+	+		+
polypeptide (TiT3 complex)
(CD3D)
CD3E antigen, epsilon	1	X03884	+			+
polypeptide (TiT3 complex)
(CD3E)
CD3G antigen, gamma	2	X06026	W				+
polypeptide (TiT3 complex)
(CD3G)
CD3Z antigen, zeta	2	J04132	+			+
polypeptide (TiT3 complex)
(CD3Z)
CD3-zeta (clone pBS NK1)	1	X55510
CD4 (low match)	1	S68043
CD4 antigen (p55) (CD4)	4	M12807		+	+		+
CD44 antigen (homing	6	X56794	W				+	+
function and Indian blood
group system (CD44)
CD48 antigen (B-cell	3	X06341	+	+	+	+		+
membrane protein) (CD48)
CD53 antigen (CD53)	10	L11670	+	+		+		+
CD53 antigen (CD53) (low	1	M60871
match)
CD63 antigen (melanoma 1	3	M59907
antigen) (CD63)
CD68 antigen (CD68)	2	S57235		+	+		+	+
CD74 antigen (invariant	72	K01144	+	+	+	+	+	+	high in many libraries
polypeptide of major
histocompatibility complex,
class II antigen-associated)
(CD74)
CD79A antigen	2	M80462			+
(immunoglobulin-
associated alpha) (CD79A)
CD79B antigen	2	M89957	+
(immunoglobulin-
associated beta) (CD79B)
CD8 antigen, alpha	2	M27161	+			+		+
polypeptide (p32) (CD8A)
CD8 antigen, beta	1	X13445	W
polypeptide 1 (p37)
(CD8B1)
CD81 antigen (target of	1	M33680		+	+			+
antiproliferative antibody 1
(CD81)
CD83 antigen (activated B	1	Q01151	B	+	+			+
lymphocytes,
mmunoglobulin
superfamily) (CD83)
CD84 antigen (leukocyte	1	U82988		+	+			+
antigen) (CD84)
CD86 antigen	1	L25259		+
CD9 antigen (p24) (CD9)	2	M38690			+		+	+
CD97 antigen (CD97)	12	X84700	+	+		+
CD97 antigen (CD97)	1	P48960
(noin-exact 59%)
CD97 antigen (CD97) (non-	1	X94630	+	+		+
exact 62%)
CDC23 (cell division cycle	1	AF053977		+			+	+
23, yeast, homolog)
(CDC23)
CDC37 homolog	1	U63131	B	+	+		+	+
Cdc42 effector protein 3	2	AF104857	B	+	+		+
(CEP3)
CDC-like kinase (CLK)	1	L29219		+	+	+		+
CDC-like kinase 2 (CLK2)	1	AF023268	B	+	+
CDW52 antigen	13	X15183	T activated	+	+		+
(CAMPATH-1 antigen)
(CDW52)
cell cycle progression	1	AF011794
restoration 8 protein(CPR8)
cell division cycle 10	4	S72008	+	+	+	+		+
(homologous to CDC10 of
S. cerevisiae) (CDC10)
cell division cycle 20,	1	U05340		+	+	+
S. cerevisiae homolog
(CDC20)
cell division cycle 25B	6	Z68092	+	+	+	+		+
(CDC25B)
cell division cycle 2-like 1	1	AF067514
(PITSLRE proteins)
(CDC2L1) (non-exact 42%)
cell division cycle 42 (GTP-	5	M35543	+	+	+	+		+
binding protein, 25 kD)
(CDC42)
cell division protein (non-	1	AF063015
exact 68%)
CELL-CYCLE NUCLEAR	1	Q13033
AUTOANTIGEN SG2NA
(S/G2 NUCLEAR
ANTIGEN)
centromere protein B	1	X55039		+		+
(80 kD) (CENPB)
cep250 centrosome	3	AF022655	B	+			+
associated protein
ceroid-lipofuscinosis,	7	AF017456	+	+	+	+	+	+	high in bone
neuronal 2, late infantile
(Jansky-Bielschowsky
disease) (CLN2)
c-fgr (=M63877	6	X52206
nonreceptor protein-
tyrosine kinase (fgr))
CGI-19 protein	3	AF132953.1
chaperonin containing	1	X74801		+	+			+
TCP1, subunit 3 (gamma)
(CCT3)
chaperonin containing	1	AF026291		+	+		+	+
TCP1, subunit 4 (delta)
(CCT4)
chaperonin containing	4	L27706	B	+	+
TCP1, subunit 6A (zeta 1)
(CCT6A)
chaperonin containing	4	AF026292	B	+				+
TCP1, subunit 7 (eta)
(CCT7)
Chediak-Higashi syndrome	1	U67615	B, T	+	+		+
1 (CHS1)			lymphoma
Chediak-Higashi syndrome	1	U67615
1 (CHS1) (low score)
chemokine (C—C motif)	4	U03905
receptor 2 (CCR2)
chemokine (C—C motif)	1	X85740
receptor 4 (CCR4) (low
match) (may contain
repeat)
chemokine (C—C motif)	6	L31581
receptor 7 (CCR7)
chemokine (C-X3-C)	5	U20350		+
receptor 1 (CX3CR1)
chemokine (C-X-C motif),	5	M99293	+	+	+	+		+
receptor 4 (fusin) (CXCR4)
chitinase 3-like 1 (cartilage	2	M80927		+		+		+
glycoprotein-39) (CHI3L1)
chitinase 3-like 2 (CHI3L2)	2	U49835		+		+		+
chloride channel 1,	1	G18280
skeletal muscle (CLCN1)
chloride channel 6	1	D28475		+	+
(CLCN6)
Chloride intracellular	1	U93205	+	+	+	+		+
channel 1 (CLIC1)
chondroitin sulfate	5	X15998			+
proteoglycan 2 (versican)
(CSPG2)
chondroitin sulfate	2	J02814			+			+
proteoglycan core protein
chromatin assembly factor	1	Q09028
1 p48 subunit (CAF-1 P48
subunit) (retinoblastoma
binding protein p48)
(retinoblastoma-binding
protein 4) (MSI1 protein
homolog)
chromodomain helicase	2	AF006513
DNA binding protein 1
(CHD1)
chromodomain helicase	1	AF054177
DNA binding protein 1-like
(CHD1L)
chromodomain helicase	1	AF006514	B	+	+		+
DNA binding protein 2
(CHD2)
chromodomain helicase	1	AF006515
DNA binding protein 3
(CHD3)
chromodomain helicase	5	X86691	+	+	+	+		+
DNA binding protein 4
(CHD4)
chromosome 1 open	1	AF054176
reading frame 7 (C1ORF7)
chromosome 1 specific	1	AB007962
transcript KIAA0493
chromosome 17 open	1	AJ008112	T	+
reading frame 1B
(C17ORF1B)
chromosome 4 open	1	AF006621		+	+	+		+
reading frame 1 (C4ORF1)
chromosome condensation	2	AF060219		+	+	+		+
1-like (CHC1L)
chromosome X open	1	Y15164	B	+	+		+
reading frame 5 (CXORF5)
chromosome-associated	2	AF092564	B	+	+		+	+
polypeptide C(CAP-C)
cig42	1	AF026944
cig5	3	AF026941
citrate synthase (CS)	2	AF047042	B	+	+		+	+
class I major	2	U31372
histocompatibility antigen
(HLA-Cw3)
class I major	1	U31372
histocompatibility antigen
(HLA-Cw3) (low match)
clathrin assembly protein	3	U45976	B	+	+			+
lymphoid myeloid leukemia
(CALM)
clathrin heavy chain	1	X55878
clathrin, heavy polypeptide-	1	D21260
like 2 (CLTCL2)
clathrin, light polypeptide	1	M20472
(Lca) (CLTA) (low match)
clathrin-	3	D63475		+	+	+	+	+
associated/assembly/adapt
or protein, medium 1
(CLAPM1)
cleavage stimulation factor,	1	M85085
3′ pre-RNA, subunit 2 64 kD
(CSTF2) (non-exact 82%)
cleavage stimulation factor,	1	U15782	B	+	+		+
3′ pre-RNA, subunit 3,
77 kD (CSTF3)
clk3	1	L29220	B	+	+
clone 23815 (Hs.82845)	1	U90916		+	+			+
clone 24592 mRNA	1	D88378	+	+	+	+		+
sequence
Clq/MBL/SPA receptor	1	U94333
C1qR(p) ( )
clusterin (complement lysis	1	M64722	+	+	+	+	+	+
inhibitor, SP-40, 40,
sulfated glycoprotein 2,
testosterone-repressed
prostate message 2,
apolipoprotein J) (CLU)
CMP-sialic acid transporter	1	D87969	B	+	+
(CMPST)
CMRF35	3	X66171
c-myc oncogene containing	1	X54629
coxIII
coagulation factor II	1	M62424		+	+			+
(thrombin) receptor (F2R)
coagulation factor V	1	M14335		+		+	+
(proaccelerin, labile factor)
(F5)
coagulation factor XIII a	3	M21998
subunit
coagulation factor XIII, A1	6	M14354		+	+	+		+
polypeptide (F13A1)
coated vesicle membrane	1	X92098	+	+	+	+	+	+
protein (RNP24)
coatomer protein complex,	5	U24105	T	+			+
subunit alpha (COPA)
Cofilin 1 (non-muscle)	13	X95404	+	+	+	+	+	+	high in fetal brain
(CFL1)
cold inducible RNA-binding	7	D78134		+	+			+
protein (CIRBP)
cold shock domain protein	3	X95325		+	+
A (CSDA)
collagen, type IX, alpha 2	3	AF019406	B
(COL9A2)
colony stimulating factor 1	3	X03663		+			+	+
receptor, formerly
McDonough feline sarcoma
viral (v-fms) oncogene
homolog (CSF1R)
colony stimulating factor 2	5	M59941
receptor, beta, low-affinity
(granulocyte-macrophage)
(CSF2RB)
colony stimulating factor 2	1	M59941
receptor, beta, low-affinity
(granulocyte-macrophage)
(CSF2RB) (low match)
colony stimulating factor 3	16	X55720		+
receptor (granulocyte)
(CSF3R)
complement component 5	1	M62505	L
receptor 1 (C5a ligand)
(C5R1)
conserved gene amplified	2	AF000152		+	+	+		+
in osteosarcoma (OS4)
COP9 (constitutive	2	AF031647		+	+			+
photomorphogenic,
Arabidopsis, homolog)
subunit 3 (COPS3)
COP9 homolog (HCOP9)	2	U51205	B	+	+	+	+	+
COPII protein, homolog of	4	X97064		+	+
s. cerevisiae SEC23p
(SEC23A)
copine I (CPNE1)	2	U83246	B	+	+		+
copine I (CPNE1) (low	1	U83246
score)
coproporphyrinogen	1	D16611			+		+	+
oxidase (coproporphyria,
harderoporphyria) (CPO)
core-binding factor, beta	1	L20298		+
subunit (CBFB)
coronin	22	X89109	T, W	+	+		+
coronin (low match)	1	U34690
coronin (non-exact, 71%)	1	X89109
cot (cancer Osaka thyroid)	1	D14497	+	+	+	+		+
oncogene (COT)
cryptochrome 1	1	D84657		+	+			+
(photolyase-like) (CRY1)
CTD (carboxy-terminal	1	AF081287		+	+	+		+
domain, RNA polymerase
II, polypeptide A)
phosphatase, subunit 1
(CTDP1)
C-terminal binding protein	1	U37408	B	+	+		+
1 (CTBP1)
C-terminal binding protein	2	AF016507		+	+		+
2 (CTBP2)
CUG triplet repeat, RNA-	3	U63289		+	+	+		+
binding protein 1
(CUGBP1)
cullin 1 (CUL1)	3	U58087		+	+	+		+
cullin 3 (CUL3)	2	U58089		+	+	+		+
cut (Drosophila)-like 1	1	M74099	B	+
(CCAAT displacement
protein) (CUTL1)
cyclin D2 (CCND2)	2	D13639		+	+	+		+
cyclin D3 (CCND3)	5	M92287	B, T		+		+
			lymphoma
cyclin G1 (CNNG1)	1	D78341	B	+	+			+
cyclin I	3	D50310	B	+			+
cyclin T2 (CNNT2)	1	AF048732	B, T	B
			lymphoma
cyclin-dependent kinase 2	1	X62071
(CDK2)
cyclin-dependent kinase	1	S76986
inhibitor (p27Kip1)
cyclin-dependent kinase	2	S67388	+	+	+	+	+	+
inhibitor 1A (p21, Cip1)
(CDKN1A)
CYP2D7-CYP2D6	1	X90926
intergenic region (partial)
cystatin B (stefin B) (CSTB)	1	L03558			+		+	+
cysteine and glycine-rich	5	L54057			+
protein 3 (cardiac LIM
protein) (CSRP3)
cytidine deaminase (CDA)	2	L27943					+
cytochrome b	1	AF042500
cytochrome b (CYTB)	1	AF042518
(isolate Aus5)
cytochrome b(-245) beta	2	X05895
chain N-terminal region (X-
linked granulomatous
disease gene)
cytochrome b-245, beta	2	X04011	+			+		+
polypeptide (chronic
granulomatous disease)
(CYBB)
cytochrome C	1	P00001
cytochrome c oxidase	1	U90915	T	+	+		+	+
subunit IV (COX4)
cytochrome c oxidase	2	M59250					+
subunit Vb (COX5B)
cytochrome c oxidase	6	AB007618	+	+	+	+		+
subunit VII-related protein
(COX7RP)
cytokine suppressive anti-	1	L35263	lymphocyte	+	+		+
inflammatory drug binding
protein 1 (p38 MAP kinase)
(CSBP1)
Cytoplasmic	1	S69272			+
antiproteinase = 38 kda
intracellular serine
proteinase inhibitor
cytotoxic granule-	1	S70114
associated RNA-binding
protein p40-TIA-1
D123 (D123)	1	D14878	+	+		+		+
D2-2	1	AF019226
D38	1	X74802
damage-specific DNA	2	AJ002955	+	+	+	+	+	+
binding protein 1 (127 kD)
(DDB1)
DCHT (low match)	1	AF017635
DEAD/H (Asp-Glu-Ala-	1	U78524		+	+	+	+	+
Asp/His) box binding
protein 1 (DDXBP1)
DEAD/H (Asp-Glu-Ala-	2	U59321	T	+	+		+	+
Asp/His) box polypeptide
(72 KD) (P72)
DEAD/H (Asp-Glu-Ala-	1	X70649		+	+			+
Asp/His) box polypeptide 1
(DDX1)
DEAD/H (Asp-Glu-Ala-	2	AB001636
Asp/His) box polypeptide
15 (DDX15)
DEAD/H (Asp-Glu-Ala-	2	AB011149	+	+	+	+		+
Asp/His) box polypeptide
16 (DDX16)
DEAD/H (Asp-Glu-Ala-	3	U50553	+	+	+	+		+
Asp/His) box polypeptide 3
(DDX3)
DEAD/H (Asp-Glu-Ala-	37	X15729	+	+	+	+		+
Asp/His) box polypeptide 5
(RNA helicase, 68 kD)
(DDX5)
DEAD/H (Asp-Glu-Ala-	1	AF015812
Asp/His) box polypeptide 5
(RNA helicase, 68 kD)
(DDX5) (low match)
DEAD/H (Asp-Glu-Ala-	2	D17532	+	+
Asp/His) box polypeptide 6
(RNA helicase, 54 kD)
(DDX6)
DEAD/H (Asp-Glu-Ala-	1	D50487		+	+	+		+
Asp/His) box polypeptide 8
(RNA helicase, 54 kD)
(DDX8)
DEAD/H (Asp-Glu-Ala-	3	L13848	+	+	+	+		+
Asp/His) box polypeptide 9
(RNA helicase A, nuclear
DNA helicase II;
leukophysin) (DDX9)
DEAD/H (Asp-Glu-Ala-	1	AF000985		+	+		+
Asp/His) box polypeptide, Y
chromosome (DBY)
Death associated protein 3	2	X83544	+	+	+	+	+	+
(DAP3)
death effector domain-	1	AF083236		+	+	+		+
containing protein (DEDD)
death-associated protein 6	2	AF039136		+	+	+		+
(DAXX)
dedicator of cyto-kinesis 2	4	D86964	+	+		+		+
(DOCK2)
defender against cell death	1	D15057			+		+	+
1 (DAD1)
Defensin, alpha 1, myeloid-	4	L12690				+	+	+
related sequence (DEFA1)
DEK gene (D6S231E)	1	X64229	B		+		+
delta sleep inducing	4	Z50781	+	+	+	+		+
peptide, immunoreactor
(DSIPI)
dendritic cell protein	3	AF064603	+	+	+	+		+
(GA17)
deoxycytidine kinase (DCK)	1	M60527
deoxyribonuclease II,	3	AB004574
lysosomal (DNASE2)
DGS-I	2	L77566		+
diacylglycerol kinase	3	D16440
diacylglycerol kinase alpha	3	AF064771		+
(DAGK1) (clone 24)
diacylglycerol kinase alpha	1	AF064771
(DAGK1) (clone 24) (low
match)
diaphanous (Drosophila,	1	AF051782	B, monocyte	+	+		+	+
homolog) 1 (DIAPH1)			stimulated
diaphorase (NADH)	1	Y09501	+	+	+	+	+	+
(cytochrome b-5 reductase)
(DIA1)
differentiated Embryo	1	AB004066		+			+	+
Chondrocyte expressed
gene 1 (DEC1)
differentiated Embryo	1	AB004066
Chondrocyte expressed
gene 1 (DEC1) (low match)
differentiation antigen	1	L23415
CD20
DiGeorge syndrome critical	1	X84076		+	+			+
region gene 2 (DGCR2)
dihydrolipoamide	2	J03620		+			+	+
dehydrogenase (E3
component of pyruvate
dehydrogenase complex,
2-oxo-glutarate complex,
branched chain keto acid
dehydrogenase complex)
(DLD)
dihydrolipoamide S-	1	Y00978	B	+			+
acetyltransferase (E2
component of pyruvate
dehydrogenase complex)
(DLAT)
dihydropyrimidinase-like 2	1	D78013		+	+		+	+
(DPYSL2)
dinG gene	1	Y10571
diptheria toxin resistance	3	AF053003	B	+	+		+	+
protein required for
diphthamide biosynthesis
(Saccharomyces)-like 2
(DPH2L2)
disintegrin-protease (non-	1	Y13323
exact 72%)
DJ-1 protein	2	AF021819	+	+	+	+		+
Dmx-like 1 (DMXL1)	1	AJ005821	+		+	+
DNA (cytosine-5-)-	3	X63692	T activated,	+			+	+
methyltransferase 1			lymphoma
(DNMT1)
DNA fragmentation factor,	1	AF064019
40 kD, beta subunit (DFFB)
DNA fragmentation factor,	2	U91985	T	+	+			+
45 kD, alpha subunit
(DFFA)
DNA mismatch repair	1	U17840
protein (hMLH1)
DNA segment on	3	M64241	+	+	+	+	+	+	high in many libraries
chromosome X (unique)
648 expressed sequence
DNA segment, single copy	3	M73547		+	+	+		+
probe LNS-CAI/LNS-CAII
(deleted in polyposis
(D5S346)
DNA-damage-inducible	1	L24498
transcript 1 (DDIT1) (low
match)
DnaJ protein	1	AJ001309
DnaJ protein	1	AJ001309
docking protein 2, 56 kD	1	AF034970
(DOK2)
dolichyl-	1	D89060	+	+	+	+	+	+	activated T cell
diphosphooligosaccharide-
protein glycosyltransferase
(DDOST)
dolichyl-phosphate	1	D86198	T activated	+	+		+
mannosyltransferase
polypeptide 1, catalytic
subunit (DPM1)
down-regulated by	1	AJ223183					+
activation (immunoglobulin
superfamily) (DORA)
down-regulated in	1	P40879
adenoma DRA (low match)
D-type cyclin-interacting	1	AF082569	B				+	+
protein 1 (DIP1)
dual specificity	4	X68277	+	+	+	+	+	+
phosphatase 1 (DUSP1)
dual specificity	1	AF023917	+	+	+	+		+
phosphatase 11 (RNA/RNP
complex 1-interacting)
(dusp11)
dual specificity	1	L05147		+	+		+	+
phosphatase 3 (vaccinia
virus phosphatase VH1-
related) (DUSP3)
dual specificity	6	X93920	+	+	+	+	+	+
phosphatase 6 (DUSP6)
dynactin 1 (p150, Glued	3	X98801
(Drosophila) homolog)
(DYTN1)
dynactin 1 (p150, Glued	1	X98801	B	+	+
(Drosophila) homolog)
(DYTN1) (low match)
dynamin 2 (DNM2)	1	L36983
dynamitin (dynactin	1	U50733
complex 50 kD subunit)
(DCTN-50) (non-exact
88%)
dynein, axonemal, heavy	1	X99947
polypeptide 17-like (non-
exact, 57% aa)
dynein, cytoplasmic, light	1	AF035812	B	+	+			+
intermediate polypeptide 2
(DNCLI2)
dynein, cytoplasmic, light	1	AF035812
intermediate polypeptide 2
(DNCLI2) (non-exact, 69%)
dyskeratosis congenita 1,	1	U59151	B	+			+	+
dyskerin (DKC1)
dystonia 1, torsion	1	AF007871		+	+	+		+
(autosomal dominant)
(DYT1)
dystrobrevin, beta (DTNB)	1	AF022728		+
dystrophia myotonica-	1	L19267		+	+		+	+
containing WD repeat motif
(DMWD)
dystrophia myotonica-	1	L08835	+	+	+			+
protein kinase (DMPK)
dystrophin (muscular	1	X14298
dystrophy, Duchenne and
Becker types) (DMD) (low
match, 59% aa)
E1B-55 kDa-associated	1	AJ007509	W	+	+		+	+
protein
E2F transcription factor 3	2	D38550		+	+	+	+	+
(E2F3)
E2F transcription factor 4,	1	X86096	B	+			+
p107/p130-binding (E2F4)
E2F transcription factor 5,	2	U15642	+	+		+		+
p130-binding (E2F5)
E74-like factor 1 (ets	1	M82882	B		+		+	+
domain transcription factor)
(ELF1)
E74-like factor 4 (ets	3	U32645		+	+			+
domain transcription factor)
(ELF4)
E74-like factor 4 (ets	1	U32645
domain transcription factor)
(ELF4) (non-exact, 71%)
early development	4	U89278	+	+	+	+		+
regulator 2 (homolog of
polyhomeotic 2) (EDR2)
EBV induced G-protein	1	L08177	W
coupled receptor (EBI2)
ecotropic viral integration	3	M60830		+		+
site 2B (EVI2B)
ectin, galactoside-binding,	1	J04456						+
soluble, 1 (galectin 1)
(LGALS1)
EGF-like-domain, multiple	1	AB011541
4 (EGFL4)
elF-2-associated p67	3	U13261	B	+				+
homolog
elastin (supravalvular aortic	1	M24782		+	+
stenosis, Williams-Beuren
syndrome) (ELN) (low
match)
elav-type RNA-binding	3	U69546
protein (ETR-3)
electron-transfer-	2	J04058		+
flavoprotein, alpha
polypeptide (glutaric
aciduria II) (ETFA)
ELK3, ETS-domain protein	2	Z36715			+			+
(SRF accessory protein 2)
(ELK3)
elongation factor 1-beta	1	L26404
elongation factor Ts	1	AF110399
(mitochondrial protein)
elongation factor Tu-	1	X84694
nuclear encoded
mitochondrial
eMDC II protein	1	AJ242015.1
ems1 sequence (mammary	1	M98343		+	+		+	+
tumor and squamous cell
carcinoma-associated
(p80/85 src substrate)
(EMS1)
endogenous retroviral	1	Z70664
element HC2
endosulfine alpha (ENSA)	1	X99906	T	+
endothelial differentiation,	2	M31210		+	+	+		+
sphingolipid G-protein-
coupled receptor, 1 (EDG1)
endothelial differentiation,	1	M31210
sphingolipid G-protein-
coupled receptor, 1 (EDG1)
(low match 66%)
endothelial monocyte-	1	U10117	+	+	+	+		+
activating polypeptide
(EMAPII)
enolase 1, (alpha) (ENO1)	12	M14328	+	+	+	+	+	+
enolase 2, (gamma,	1	X51956		+
neuronal) (ENO2)
enolase-alpha	1	D28437
enoyl Coenzyme A	2	U16660
hydratase 1, peroxisomal
(ECH1)
enoyl Coenzyme A	1	D13900	+	+	+	+	+	+
hydratase, short chain, 1,
mitochondrial (ECHS1)
ENOYL-COA	1	P30084
HYDRATASE,
MITOCHONDRIAL
PRECURSOR (SHORT
CHAIN ENOYL-COA
HYDRATASE) (SCEH)
(ENOYL-COA
HYDRATASE 1) (low
match, non-exact 56%)
epidermal growth factor	2	U07707		+		+		+
receptor pathway substrate
15 (EPS15)
EPIDIDYMAL	2	Q15668
SECRETORY PROTEIN
E1 PRECURSOR (EPI-1)
(HE1) (EPIDIDYMAL
SECRETORY PROTEIN
14.6) (ESP14.6)
epithelial membrane	1	U87947	+	+	+	+		+
Protein 3 (EM[P3)
Epoxide hydrolase 1,	1	L29766						+
microsomal								only
(xenobiotic)
(EPHX1)
ERCC2 (=L47234)	1	X52221
ERF-2	3	U07802	+	+	+	+		+	high in gall bladder
ERp28 protein	1	X94910	+	+	+	+		+
erythrocyte membrane	2	M81635
protein
erythroleukemic cells K562	2	L25343
EST (Hs.189509)	2	U24166
estrogen receptor-related	1	L38487
protein (hERRa1)
ESTs, Highly similar to	1	X66503	B, T	+	+
ADENYLOSUCCINATE
SYNTHETASE
ESTs, Moderately similar to	1	U28811	+	+	+	+		+
cysteine-rich fibroblast
growth factor receptor
ET binding factor 1 (SBF1)	1	U93181	+	+				+
ets domain protein ERF	1	U15655	+	+	+	+		+
eukaryotic translation	326	X03558	T	+	+			+
elongation factor 1 alpha 1
(EEF1A1)
eukaryotic translation	1	X03558
elongation factor 1 alpha 1
(EEF1A1) (low match)
eukaryotic translation	1	X03558
elongation factor 1 alpha 1
(EEF1A1) (low match)
eukaryotic translation	5	X60489	+	+	+	+		+
elongation factor 1 beta 2
(EEF1B2)
eukaryotic translation	1	Z21507	+	+	+	+	+	+
elongation factor 1 delta
(guanine nucleotide
exchange protein) (EEF1D)
eukaryotic translation	31	Z11531
elongation factor 1 gamma
(EEF1G)
eukaryotic translation	2	X51466		+				+
elongation factor 2 (EEF2)
eukaryotic translation	1	J02645
initiation factor 2, subunit 1
(alpha, 35 kD) (EIF2S1)
eukaryotic translation	1	M29536
initiation factor 2, subunit 2
(beta, 38 kD) (EIF2S2)
eukaryotic translation	3	L19161		+	+
initiation factor 2, subunit 3
(gamma, 52 kD) (EIF2S3)
eukaryotic translation	2	U78311
initiation factor 3, subunit
10 (theta, 150/170 kD)
(EIF3S10)
eukaryotic translation	3	U36764	+	+	+	+	+	+	high in white blood
initiation factor 3, subunit 2									cells
(beta, 36 kD) (EIF3S2)
eukaryotic translation	6	U54559	+	+	+	+		+	high in spleen
initiation factor 3, subunit 3
(gamma, 40 kD) (EIF3S3)
eukaryotic translation	9	AF020833		+	+	+		+
initiation factor 3, subunit 4
(delta, 44 kD) (EIF3S4)
eukaryotic translation	4	U94175	+	+	+	+		+	high in bladder
initiation factor 3, subunit 6
(48 kD) (EIF3S6)
eukaryotic translation	1	U62962		+	+	+		+	Highly represented
initiation factor 3, subunit 6									(1.4833 pct) in library
(EIF3S6)									36 human gall
									bladder
eukaryotic translation	3	U54558	+	+	+	+		+
initiation factor 3, subunit 7
(zeta, 66/67 kD) (EIF3S7)
eukaryotic translation	5	U46025	+	+	+	+	+	+	high in testis
initiation factor 3, subunit 8,
110 KD (EIF3S8)
eukaryotic translation	1	AF012088
initiation factor 4 gamma, 1
(EIF4G)
eukaryotic translation	1	AF012088
initiation factor 4 gamma, 1
(EIF4G) (low match)
eukaryotic translation	2	D12686
initiation factor 4 gamma, 1
(EIF4G1)
eukaryotic translation	6	U73824	+	+	+	+	+	+
initiation factor 4 gamma, 2
(EIF4G2)
eukaryotic translation	2	U76111	+	+	+	+	+	+
initiation factor 4 gamma, 2
(EIFG2)
eukaryotic translation	29	D13748
initiation factor 4A, isoform
1 (EIF4A1)
eukaryotic translation	11	D30655	+	+	+	+	+	+
initiation factor 4A, isoform
2 (EIF4A2)
eukaryotic translation	18	X55733	+	+	+	+		+
initiation factor 4B (EIF4B)
eukaryotic translation	1	P06730
initiation factor 4E (EIF4E)
Eukaryotic translation	3	L36056	T, B	+			+	+
initiation factor 4E binding
protein 2 (EIF4EBP2)
eukaryotic translation	2	Q15056
initiation factor 4H (EIF4H)
eukaryotic translation	2	U49436	+	+	+	+	+	+
initiation factor 5 (EIF5)
eukaryotic translation	2	U90176	+	+	+	+		+
termination factor 1 (ETF1)
EV12 protein	1	M55266		+
Ewing sarcoma breakpoint	1	X66899	+	+	+	+		+
region 1 (EWSR1)
EWS/FLI1 activated	2	AF020264
transcript 2 homolog (EAT-
2)
EWS-E1A-F chimeric	1	U35622
protein
excision repair cross-	1	M28650	+	+	+	+		+
complementing rodent
repair deficiency,
complementation group 1
(includes overlapping
antisense sequence)
(ERCC1)
excision repair cross-	1	X69978		+	+	+		+
complementing rodent
repair deficiency,
complementation group 5
(xeroderma pigmentosum,
complementation group G
(Cockayne syndrome))
(ERCC5)
exostoses (multiple)-like 3	1	AF001690		+	+	+		+
(EXTL3)
F11	1	X77744				+
F1-ATPase beta subunit	2	X03559
(F-1 beta)
Fanconi anaemia group A	2	Z83095
Fanconi anemia,	1	X99226	+	+	+	+
complementation group A
(FANCA)
far upstream element	2	U05040	+		+			+
(FUSE) binding protein 1
(FUBP1)
farnesyl diphosphate	1	J05262	+	+	+	+		+
synthase (farnesyl
pyrophosphate synthetase,
dimethylallyltranstransferase,
geranyltranstransferase)
(FDPS)
farnesyl-diphosphate	2	X69141	+	+	+	+	+	+
farnesyltransferase 1
(FDFT1)
farnesyltransferase, CAAX	2	L00635		+	+
box, beta (FNTB)
Fas ligand (gene and	1	AF044583
promoter region)
Fas-ligand associated	1	U70667
factor 1
fatty-acid-Coenzyme A	4	D10040	+	+	+	+	+	+
ligase, long-chain 1
(FACL1)
Fc fragment of IgA,	1	X54150
receptor for (FCAR)
Fc fragment of IgE, high	1	M33195	+	+	+	+		+
affinity I, receptor for;
gamma polypeptide
(FCER1G)
Fc fragment of IgE, low	2	X04772	+	+
affinity II, receptor for
(CD23A) (FCER2)
Fc fragment of IgG, low	6	M31932	+	+	+	+	+	+
affinity IIa, receptor for
(CD32)
Fc fragment of IgG, low	1	X62572	+	+	+	+	+	+
affinity IIa, receptor for
(CD32) (FCGR2A)
Fc fragment of IgG, low	34	X07934	+	+	+	+		+
affinity IIIa, receptor for
(CD16) (FCGR3A)
Fc fragment of IgG,	3	U12255		+	+	+	+	+	high in many libraries
receptor, transporter, alpha
(FCGRT)
fc-fgr	1	Z13983
Fc-gamma-receptorIIIB	2	M90746
(FCGR3B)
feline sarcoma (Snyder-	3	X06292
Theilen) viral (v-
fes)/Fujinami avian
sarcoma (PRCII) viral (v-
fps) oncogene
homolog(FES) c-fes/fps)
female sterile homeotic-	2	X96670	+	+	+	+		+
related gene 1 (mouse
homolog) (FSRG1)
ferritin L-chain	9	Y09188
ferritin, heavy polypeptide 1	4	M11146	+	+	+	+	+	+
(FTH1)
fertilin alpha pseudogene	1	Y09232
fetal Alzheimer antigen	2	U05237		+
(FALZ)
fetal Ig heavy chain	1	M34024
variable region
fibrillarin (FBL)	1	X56597	+	+	+	+	+	+
fibrinogen-like protein 2	3	Z36531				+
(T49)
fibroblast growth factor	1	M35718	+	+	+	+	+	+
receptor 2 (bacteria-
expressed kinase,
keratinocyte growth factor
receptor, craniofacial
dysostosis 1, Crouzon
syndrome) syndrome,
Pfeiffer syndrome,
Jackson-Weiss) (FGFR2)
ficolin (collagen/fibrinogen	19	D83920				+		+
domain-containing) 1
(FCN1)
filamin A, alpha (actin-	2	X53416
binding protein-280)
(FLNA)
filamin B, beta (actin-	1	AF043045		+	+		+
binding protein-278)
(FLNB)
Finkel-Biskis-Reilly murine	2	X65923	+	+	+	+	+	+	Highly represented in
sarcoma virus (FBR-MuSV)									intraepithelial
ubiquitously expressed (fox									neoplasia and
derived); ribosomal protein									invasive prostate
S30 (FAU)									tumor
FK-506 binding protein	1	M80199	+	+	+	+		+
FK506-binding protein 1A	2	M34539
(12 kD) (FKBP1A)
FK506-binding protein 1B	1	M92423		+		+		+
(12.6 kD) (FKBP1B)
FK506-binding protein 5	4	U71321		+	+	+		+
(FKBP5)
Flightless I (Drosophila)	3	U80184		+
homolog (FLII)
Flightless I (Drosophila)	1	U80184
homolog (FLII) (low match)
FLN29 (FLN29)	2	AB007447		+		+		+
flotillin 2 (FLOT2)	5	M60922	+	+	+	+	+	+
folate receptor 2 (fetal)	1	AF000380		+	+	+		+
(FOLR2)
forkhead (Drosophila)	1	AF032886	+	+		+		+
homolog
(rhabdomyosarcoma) like 1
(FKHRL1)
Formyl peptide receptor 1	9	M60627	+	+	+	+		+
(FPR1)
formyl peptide receptor-like	1	M84562							Found only in
1 (FPRL1)									libraries from
									placenta
formyl peptide receptor-like	1	M84562
1 (FPRL1) (low score)
fragile X mental retardation	1	L29074	+	+		+		+
1 (FMR1)
fragile X mental	1	U25165	+	+	+	+
retardation, autosomal
homolog 1 (FXR1)
Friend leukemia virus	3	M93255	+	+
integration 1 (FLI1)
fructose-bisphosphatase 1	1	D26054				+		+
(FBP1)
FSHD-associated repeat	1	U85056
DNA, proximal region
fucose-1-phosphate	1	AF017445		+	+	+
guanylyltransferase (FPGT)
full length insert cDNA	1	AF086122
clone ZA78A09
full length insert cDNA	1	AF075061
YP07G10
fumarate hydratase (FH)	1	U59309		+	+	+		+
FUS (low match)	1	X99006
FYN-binding protein (FYB-	16	U93049		+		+
120/130) (FYB)
G alpha interacting protein	1	X91809
(GAIP) (low score)
G protein beta subunit-like	2	D28398
protein 12.3
G protein-coupled receptor	1	X81892				+
64 (HE6) (non-exact 59%)
G protein-coupled receptor	2	L16862	+	+	+			+
kinase 6 (GPRK6)
G1 to S phase transition 1	2	X17644		+	+	+	+	+
(GSPT1)
GA-binding protein	1	D13316		+	+	+	+	+
transcription factor, beta
subunit 2 (47 kD) (GABPB2)
galactose-1-phosphate	2	M60091
uridylyltransferase (GALT)
galactosidase, beta 1	3	M27508		+			+	+
(GLB1)
galactosyltransferase	1	M13701
(=X13223 N-
acetylglucosamide-(beta 1-4)-
galactosyltransferase)
galectin-9 isoform	1	AB006782	+			+		+
gamma2-adaptin (G2AD)	1	AF068706	+	+		+		+
gamma-actin	2	M37130
gamma-aminobutyric acid	2	AJ012187		+	+			+
(GABA) B receptor 1
(GABBR1)
GATA-binding protein 2	1	M68891				+		+
(GATA2)
GATA-binding protein 3	1	M69106			+	+		+
(GATA3)
GCN5 (general control of	3	D64007	+	+	+	+		+
amino-acid synthesis,
yeast, homolog)-like 1
(GCN5L1)
GDP dissociation inhibitor	1	D45021	+	+	+	+		+	high in adult brain
1 (GDI1)
GDP dissociation inhibitor	4	Y13286
2 (GCI2)
GDS-related protein	4	U68142	+	+	+	+		+
(HKE1.5)
gelsolin (amyloidosis,	3	X04412		+	+	+	+	+
Finnish type) (GSN)
general transcription factor	4	Y14946	+	+	+	+	+	+
II, I (GTF2I)
general transcription factor	1	AF038968	+	+	+	+	+	+	high in fetal brain
II, i, pseudogene 1
(GTF2IP1)
general transcription factor	4	X64037	+	+	+	+		+
IIF, polypeptide 1 (74 kD
subunit) (GTF2F1)
general transcription factor	2	Z30093	B, T
IIH, polypeptide 3 (34 kD
subunit) (GTF2H3)
general transcription factor	3	Y07595		+		+		+
IIH, polypeptide 4 (52 kD
subunit) (GTF2H4)
general transcription factor	1	U14134	+	+		+		+
IIIA (GTF3A)
general transcription factor	1	U02619		+		+
IIIC, polypeptide 1 (alpha
subunit, 220 kD) (GTF3C1)
general transcription factor	3	D13636	+	+	+	+	+	+
IIIC, polypeptide 2 (beta
subunit, 110 kD) (GTF3C2)
germline immunoglobulin	1	L06612
heavy chain (IGHV@)
germline immunoglobulin	1	X92236
heavy chain, variabl region
germline immunoglobulin	1	X92343
heavy chain, variable
region, (21-2)
GLE1 (yeast homolog)-like,	1	AF058922		+	+
RNA export mediator
(GLE1L)
glia maturation factor, beta	1	AB001106	+	+		+		+
(GMFB)
glioma-associated	1	X07384
oncogene homolog (zinc
finger protein) (GLI)
glioma-associated	1	X07384
oncogene homolog (zinc
finger protein) (GLI) (low
score)
globin, alpha 2	1	V00516
glucocorticoid receptor	1	M32284
(=M69104)
glucocorticoid receptor	2	U80947	+	+	+	+		+
(GRL)
glucos phosphate	1	L09105
isomerase (CONTAINS
LARGE REPEAT)
glucosamine (N-acetyl)-6-	1	Z12173	+
sulfatase (Sanfilippo
disease IIID) (GNS)
glucosamine (N-acetyl)-6-	1	Z12173
sulfatase (Sanfilippo
disease IIID) (GNS) (non-
exact 56%)
glucose transporter-like	1	M20681		+	+	+	+	+
protein-III (GLUT3)
glucose transporter-like	1	M20681
protein-III (GLUT3) (low
match)
glucosidase, alpha; acid	1	Y00839	+	+		+		+
(Pompe disease, glycogen
storage disease type II)
(GAA)
glucosidase, beta; acid	1	K02920	+	+	+	+		+
(includes
glucosylceramidase) (GBA)
glutamate dehydrogenase	1	M20867		+	+	+	+	+
1 (GLUD1)
glutamate-ammonia ligase	12	X59834	+	+	+	+		+
(glutamine synthase)
(GLUL)
glutamate-ammonia ligase	1	Y00387
(glutamine synthase)
(GLUL) (low score)
glutamate-cysteine ligase	1	M90656				+
(gamma-glutamylcysteine
synthetase), catalytic
(72.8 kD) (GLCLC)
glutamine cyclotransferase	1	X71125		+	+
glutamine-fructose-6-	1	M90516		+		+
phosphate transaminase 1
(GFPT1)
glutaminyl-tRNA	1	X72396
synthetase
glutaminyl-tRNA	6	X76013	+	+	+	+		+
synthetase (QARS)
glutamyl-prolyl-tRNA	1	X54326
synthetase (EPRS)
glutathione peroxidase 1	2	M21304	+	+	+	+	+	+
(GPX1)
glutathione peroxidase 4	1	X71973	+	+	+	+		+
(phospholipid
hydroperoxidase) (GPX4)
glutathione S-transferase pi	1	U30897		+	+	+	+	+
(GSTP1)
glutathione S-transferase	1	AF070657
subunit 13 homolog
glyceraldehyde-3-	12	J02642					+
phosphate dehydrogenase
(GAPD)
glycogenin (GYG)	1	U31525		+	+	+		+
glycophorin C (Gerbich	1	X12496		+	+	+		+
blood group) (GYPC)
glycoprotein M6B (GPM6B)	1	U45955		+	+
glycyl-tRNA synthetase	1	U09587		+	+	+		+
(GARS)
glyoxalase I (lactoyl	1	L07837	+	+	+	+		+
glutathione lyase) (GLYI)
golgi autoantigen, golgin	1	U51587		+		+
subfamily a, 1 (GOLGA1)
golgi autoantigen, golgin	1	L06147
subfamily a, 2 (GOLGA2)
(non-exact, 70%)
golgi autoantigen, golgin	1	U31906
subfamily a, 4 (GOLGA4)
golgi autoantigen, golgin	1	X75304		+	+	+		+
subfamily b, macrogolgin
(with transmembrane
signal), 1 (GOLGB1)
gp25L2 protein	4	X90872
grancalcin	8	M81637		+	+	+
granulin (GRN)	16	X62320	+	+	+	+		+
granulin (GRN) (low match)	1	X62320
Granulysin (NKG5)	5	M85276	+					+
granzyme A (granzyme 1,	1	M18737	+	+	+	+		+
cytotoxic T-lymphocyte-
associated serine esterase
3) (GZMA)
GRB2-related adaptor	1	U52518	T only
protein (GRAP)
Grb2-related adaptor	1	AF090456	T				+
protein 2 (GRAP2)
GRO1 oncogene	1	X54489				+		+
(melanoma growth
stimulating activity, alpha)
(GRO1)
growth arrest and DNA-	1	S40706
damage-inducible gene
(GADD153)
growth arrest-specific 7	4	AB007854		+	+
(GAS7)
growth factor receptor-	1	X62852	B	+			+	+
bound protein 2 (GRB2)
GS1 (protein of unknown	1	M86934		+	+	+
function)
GS3955	4	D87119		+	+	+		+
GTP binding protein 1	1	U87964		+	+	+
(GTPBP1)
GTP binding protein similar	1	U87791		+	+	+		+
to S. cerevisiae HBS1
(HBS1)
GTPase activating protein-	1	AB011110		+	+	+		+	high fetal brain
like (GAPL)
GTP-binding protein (low	1	Z49068
match)
GTP-binding protein G(K),	1	P08754
alpha subunit (=G(I)
ALPHA-3)(=GTP-binding
regulatory protein Gi alpha-
3 chain)
Gu protein (GURDB)	2	U41387	+		+	+		+
guanine nucleotide binding	1
protein
guanine nucleotide binding	4	J03004	+	+	+	+		+
protein (G protein), alpha
inhibiting activity
polypeptide 2 (GNAI2)
guanine nucleotide binding	7	M20597	+	+	+	+		+
protein (G protein), alpha
inhibiting activity
polypeptide 3 (GNAI3)
guanine nucleotide binding	2	X04409	B, T	+			+	+
protein (G protein), alpha
stimulating activity
polypeptide 1 (GNAS1)
guanine nucleotide binding	1	Z18859
protein (G protein), alpha
transducing activity
polypeptide 2 (GNAT2)
guanine nucleotide binding	2	AF017656		+	+	+		+
protein (G protein), beta 5
(GNB5)
guanine nucleotide binding	5	M36430	+	+	+	+	+	+
protein (G protein), beta
polypeptide 1 (GNB1)
guanine nucleotide binding	2	AF011496		+	+	+
protein (G protein), q
polypeptide (GNAQ)
guanine nucleotide binding	1	L25665	+	+	+	+		+
protein-like 1 (GNL1)
guanine nucleotide	1	L13857	+	+	+	+
exchange factor
guanine nucleotide	1	X15610	+	+	+	+		+
regulatory factor (LFP40)
guanine nucleotide	1	U72206	+	+	+	+		+
regulatory factor (LFP40)
GUANINE NUCLEOTIDE-	1	P25388
BINDING PROTEIN BETA
SUBUNIT-LIKE PROTEIN
12.3 (P205) (RECEPTOR
OF ACTIVATED PROTEIN
KINASE C 1) (RACK1)
GUANINE-	1	U10860			+
MONOPHOSPHATE
SYNTHETASE (GMPS)
guanosine monophosphate	1	M24470
reductase (GMPR) (non-
exact, 72%)
guanosine-diphosphatase	1	AF016032
like protein
guanylate binding protein	2	M55542		+	+	+	+	+
1, interferon-inducible,
67 kD (GBP1)
guanylate binding protein	6	M55543	+	+	+	+		+
2, interferon-inducible
(GBP2)
H2A histone family,	1	Z83742
member C (H2AFC)
H2A histone family,	2	AF041483	+	+	+	+		+
member Y (H2AY)
H2B histone family,	2	Z80783	+	+	+	+	+	+	high in adrenal gland
member L (H2BFL)									tumor
h2-calponin	1	D86059
H-2K binding factor-2	1	L08904		+	+	+		+
H3 histone family, member	1	Z83735
K (H3FK)
H3 histone, family 3A	7	M11353	+	+	+	+		+	high in ovary
(H3F3A)
H3 histone, family 3B	15	Z48950	+	+	+	+		+	high in endothelial
(H3.3B) (H3F3B)									cells
hbc647	1	U68494		+	+	+	+
heat shock 27 kD protein 1	1	U12404		+	+		+	+
(HSPB1)
heat shock 40 kD protein 1	4	D85429	+	+	+	+	+	+	high in testis
(HSPF1)
heat shock 60 kD protein 1	3	M22382	+	+	+	+	+	+
(chaperonin) (HSPD1)
heat shock 70 kD protein 1	7	M59828	+	+	+	+	+	+	high in activated T
(HSPA1A)									cells
heat shock 70 kD protein 5	13	X87949		+	+		+
(glucose-regulated protein,
78 kD) (HSPA5)
heat shock 70 kD protein 6	4	X51757	+	+	+
(HSP70B′) (HSPA6)
heat shock 70 kD protein	2	L15189		+	+	+	+	+
9B (mortalin-2) (HSPA9B)
HEAT SHOCK COGNATE	1	P11142
71 KD PROTEIN
heat shock factor binding	2	AF068754
protein 1 (HSBP1)
heat shock protein 90	13	M27024	+	+	+	+	+	+	high in many libraries
heat shock protein, DNAJ-	1	D13388		+	+		+	+
like 2 (HSJ2)
Hect (homologous to the	1	U50078		+	+	+
E6-AP (UBE3A) carboxyl
terminus) domain and
RCC1 (CHC1)-like domain
(RLD) 1 (HERC1)
hect domain and RLD 2	1	AB002391	+	+	+	+		+
(HERC2)
helicase-like protein (HLP)	1	X98378	+	+		+		+
helix-loop-helix protein	1	M65214						+
HE47 (E2A)
hematopoietic cell-specific	18	X16663	+		+	+		+
Lyn substrate 1 (HCLS1)
heme oxygenase	1	X06985		+		+	+	+
(decycling) 1 (HMOX1)
HEMOGLOBIN ALPHA	1	P19015
CHAIN
hemoglobin beta (beta	5	AF117710
globin)
hemoglobin, alpha 1	301	V00491			+		+	+
(HBA1)
hemoglobin, alpha 1	1	V00491
(HBA1) (low match)
hemoglobin, alpha 1 (low	1	V00493
match)
hemoglobin, alpha 1 (non-	1	J00153
exact, 76%)
hemoglobin, alpha 1 (non-	1	V00493
exact, 82%)
hemoglobin, beta (HBB)	129	V00497	+	+	+	+	+	+	high in many libraries
hemoglobin, beta (HBB)	1	V00497
(low match)
hemoglobin, beta (HBB)	1	L48220
(low match)
hemokine (C-X-C motif),	1	D10924	+	+	+	+		+
receptor 4 (fusin) (CXCR4)
hemopoietic cell kinase	5	M16591				+		+
(HCK)
hepatitis C-associated	2	D28908
microtubular aggregate
rotein p44
hepatoma-derived growth	1	D16431	+	+	+	+		+
factor
Hermansky-Pudlak	2	U65676
syndrome (HPS)
HERV-E integrase (non-	1	AF026246
exact 76% aa)
heterogeneous nuclear	2	S63912		+	+	+		+
protein similar to rat helix
destabilizing protein
(FBRNP)
heterogeneous nuclear	4	M16342
ribonucleoprotein (C1/C2)
(HNRPC)
heterogeneous nuclear	1	M65028	+	+	+	+	+	+
ribonucleoprotein A/B
(HNRPAB)
heterogeneous nuclear	20	X12671	+	+	+	+	+	+	High in alveolar
ribonucleoprotein A1									rhabdomyosarcoma
(HNRPA1)
heterogeneous nuclear	3	M29064	+	+	+	+	+	+	High in activated T
ribonucleoprotein A2/B1									cell, fetal brain
(HNRPA2B1)
heterogeneous nuclear	2	D55673	+	+	+	+	+	+
ribonucleoprotein D
(hnRNP D)
heterogeneous nuclear	5	D89092	+	+	+	+	+	+
ribonucleoprotein D-like
(HNRPDL)
heterogeneous nuclear	1	L28010	+	+	+	+		+
ribonucleoprotein F
(HNRPF)
heterogeneous nuclear	1	L28010
ribonucleoprotein F
(HNRPF) (83%)
heterogeneous nuclear	2	Z23064		+	+	+		+
ribonucleoprotein G
(HNRPG)
heterogeneous nuclear	3	P55795
ribonucleoprotein H
(HNRPH) (FTP-3)
heterogeneous nuclear	1	P31943
ribonucleoprotein H
(HNRPH) (low match)
heterogeneous nuclear	2	L22009	+	+	+	+		+
ribonucleoprotein H1 (H)
(HNRPH1)
heterogeneous nuclear	21	S74678	+	+	+	+	+	+
ribonucleoprotein K
(HNRPK)
heterogeneous nuclear	1	AF000364		+	+	+	+	+
ribonucleoprotein R
(HNRPR)
heterogeneous nuclear	3	X65488	+	+	+	+	+	+
ribonucleoprotein U
(scaffold attachment factor
A) (HNRPU)
hexokinase 1 (HK1)	2	X66957		+	+	+		+
hexokinase 2 (HK2)	3	Z46376	+	+	+	+		+
hexokinase 3 (HK3)	2	U51333
hexosaminidase A (alpha	1	S62047
polypeptide) (HEXA
HGMP07I gene for	2	U76377
olfactory receptor
High density lipoprotein	2	M64098	+	+	+	+	+	+
binding protein (HDLBP)
high-mobility group	5	X12597	+	+	+	+	+	+
(nonhistone chromosomal)
protein 1 (HMG1)
high-mobility group	1	D63874
(nonhistone chromosomal)
protein 1 (HMG1) (non-
exact 60%)
High-mobility group	2	M12623	+	+	+	+		+
(nonhistone chromosomal)
protein 17 (HMG17)
high-mobility group	2	M83665	+	+	+	+	+	+
(nonhistone chromosomal)
protein 2 (HMG2)
high-mobility group	2	L17131	+	+	+		+	+
(nonhistone chromosomal)
protein isoforms I and Y
high-risk humanpapilloma	1	AF090990.1
viruses E6 oncoproteins
targeted protein E6TP1
beta (=AB007900
KIAA0440)
histidine ammonia-lyase	1	D16626			+,
(HAL)					only
histidyl-tRNA synthetase	2	Z11518	+	+	+	+	+	+
(HARS)
histocompatibility antigen	1	U31372
(HLA-Cw3), class I
histone deacetylase 1	4	U50079	+	+	+	+		+
(HDAC)
histone deacetylase 1	2	D50405	+	+	+	+		+
(HDAC1)
histone deacetylase 5 (NY-	1	AF039691		+	+
CO-9)
HK2 gene for hexokinase II	1	Z46362
HL9 monocyte inhibitory	2	U91928				+
receptor precursor
HLA class I heavy chain	1
(HLA-Cw*1701)
HLA class I locus C heavy	1	X58536
chain
HLA class II SB 4-beta	1	X03022
chain
HLA class III region	1	U89335	+	+	+	+		+
containing NOTCH4 gene
HLA-A	1	Z72423
HLA-A	2	AJ006020
HLA-A*7402	1	AJ223060
HLA-A11	1	U02934
HLA-B	2	X75953
HLA-B	1	X83401
HLA-B	1	X78426
HLA-B associated	1	Z37166	+	+	+	+	+	+
transcript-1 (D6S81E)
HLA-B associated	2	M33509	+	+	+	+
transcript-2 (D6S51E)
HLA-B*1529	4	D44501
HLA-Bw72 antigen	119	L09736	+	+	+	+	+	+	high in many libraries
HLA-C gene (HLA-	1	D83957
Cw*0701 allele)
HLA-Cw*0701	9	Z46810
HLA-Cw*0801	1	D64151
HLA-Cw*1203	1	D64146
HLA-DC classII	2	X00370
histocompatibility antigens
alpha-chain (=K01160)
HLA-DR alpha-chain	17	M60333	+	+	+	+	+	+	high in spleen
HLA-F (leukocyte antigen	3	X17093			+	+		+
F)
HMG box containing	3	AF019214
protein 1
hMLH1 (=U83845)	1	AB017806.1
Hmob33	3	Y14155
HMT1 (hnRNP	2	U80213	+	+	+	+		+
methyltransferase,
S. cerevisiae)-
like 1
(HRMT1L1)
hnRNP C1/C2	2	D28382
homeobox (=X58250	1	M60721
Mouse homeo box protein,
put. transcription factor
involved in embryogenesis
and hematopoiesis)
homeobox protein (HLX1)	1	U14326
(=M60721)
homeodomain-interacting	1	AF004849	+		+	+		+
protein kinase 3 (HIPK3)
homolog of Drosophila past	2	AF001434	+	+	+	+		+
(PAST)
homolog of yeast	3	D50916		+	+	+		+
(S. cerevisiae)
ufd2 (UFD2)
HPV16 E1 protein binding	1	U96131		+	+			+
protein
HRIHFB2157	1	AB015344		+	+			+
HRX-like protein	1	Y08836
(=AF010403 ALR)
hsc70 gene for 71 kd heat	3	Y00371
shock cognate protein
HSPC012	1	AF077036.1
HSPC021	1	AF077207.1
HsPex13p	1	U71374
htra2-beta-2	1	U87836	+	+	+	+		+
HU-K4	1	U60644
hunc18b2	1	U63533		+	+	+		+
HUNKI	1	Y12059	+	+		+	+	+
huntingtin-interacting	1	AF049528
protein HYPA/FBP11
(HYPA)
hVps41p (HVPS41)	1	U87309
hydroxyacyl-Coenzyme A	1	U04627		+	+		+
dehydrogenase/3-ketoacyl-
Coenzyme A
thiolase/enoyl-Coenzyme A
hydratase (trifunctional
protein), alpha subunit
(HADHA)
hydroxyacyl-Coenzyme A	1	D16481	+	+	+	+		+
dehydrogenase/3-ketoacyl-
Coenzyme A
thiolase/enoyl-Coenzyme A
hydratase (trifunctional
protein), beta subunit
(HADHB)
hydroxysteroid (17-beta)	1	U34879		+			+
dehydrogenase 1
(HSD17B1)
hypothetical protein	1
hypothetical protein	1
(AL008729) (dJ257A7.2)
hypothetical protein	1	U96629
(CIT987SK_2A8_1
chromosome 8)
hypothetical protein (clone	1	AF055004
24640)
hypothetical protein (clone	1	Z70222
ICRFp507G2490).
hypothetical protein	1	AL022238
(dJ1042K10.4) (non-exact
76%)
hypothetical protein	2	AL031432
(dJ465N24.1 similar to
predicted yeast and worm
proteins)
hypothetical protein	2	AL008730
(dJ487J7.1.1)
hypothetical protein	2	AL023653
(dJ753P9.2)
hypothetical protein	1	AL050131.1
(DKFZp586I111)
hypothetical protein	1	AL008729
(J257A7.2)
hypothetical protein	1	AB007900
(KIAA0440) (=AF026504
R. norvegicus SPA-1 like
protein)
hypothetical protein (L1H 3′	1
region)
hypothetical protein (S164)	1	P49756
hypothetical protein (similar	1	AF109907
to thrombospondin) (non-
exact 56%)
hypothetical protein 3	1
hypothetical protein B	1	U47926
(HSU47926) (non-exact,
56%)
hypothetical protein from	3	U50532	+	+	+	+		+
BCRA2 region (CG005)
hypoxia-inducible factor 1,	1	AF050115
alpha subunit (basic helix-
loop-helix transcription
factor) (HIF1A)
Ia-associated invariant	1	M13555
gamma-chain (clones
lambda-y (1,2,3))
iduronate 2-sulfatase	2	M58342	+	+	+	+		+
(Hunter syndrome) (IDS)
Ig heavy chain V region	1	L20779
(=D11016)
Ig heavy chain variable	2	M34024
region
Ig heavy chain variable	1	Z75378
region (VH4DJ) (clone
T14.4)
Ig heavy chain variable	1	Z75392
region (VH4DJ) (clone
T22.18)
Ig J chain	1	M12378
Ig kappa	1	S49007
IG kappa light chain	1	X63398
variable region A20
Ig kappa light chain, V- and	1	D90158
J-region (=X59315)
Ig lambda light chain	1	Z85052
variable region (26-
34ITIIIF120)
Ig mu-chain VDJ4-region	1	M16949
Ig rearranged anti-myelin	1	M29469
kappa-chain (V-J4-region,
hybridoma AE6-5)
Ig rearranged H-chain	2	M97920
mRNA V-region
Ig rearranged light-chain V	1	M74020
region (=D90158)
IGF-II mRNA-binding	1	U97188	+	+	+
protein 3 (KOC1) (non-
exact, 75%)
IgG Fc binding protein	1	D84239	+	+		+		+
(FC(GAMMA)BP)
IgG heavy chain variable	1	M83136
region (vH26)
IgM heavy chain (C mu,	1	X14939
membrane exons)
IkB kinase-beta (IKK-beta)	1	AF029684
IL-1 receptor type II	1	U14177
IL2-inducible T-cell kinase	2	S65186
(ITK)
immediate early protein	1	M62831	+		+	+		+
(ETR101)
immunogloblin light chain	1	D87018
(lambda)
Immunoglobulin (CD79A)	1	Y08915	B, T	+	+		+
binding protein 1 (IGBP1)
immunoglobulin C (mu)	2	X57331
and C (delta) heavy chain
(=K02878)
immunoglobulin G Fc	1	Z46223
receptor IIIB
immunoglobulin gamma 3	3	Y14737	+			+		+	high in many libraries
(Gm marker) (IGHG3)
immunoglobulin gamma	1	Z66542
heavy chain variable region
(=X61011)
immunoglobulin heavy	1	X62109
chain (VI-3B)
immunoglobulin heavy	1	X86356
chain J region
immunoglobulin heavy	2	X86355
chain J region, B1
haplotype
immunoglobulin heavy	1	AF062126
chain variable region (IGH)
(clone 21u-48)
immunoglobulin heavy	1	AF062212
chain variable region (IGH)
(clone 23u-1)
immunoglobulin heavy	2	M99641
chain variable region V1-18
(IGHV@) (=X60503)
immunoglobulin heavy	2	M99672
chain variable region V3-43
(IGHV@)
immunoglobulin heavy	3	M99649
chain variable region V3-7
(IGHV@)
immunoglobulin IgH heavy	1	U07986
chain Fd fragment
immunoglobulin kappa light	1	X58081
chain
immunoglobulin kappa light	1	X12686
chain V-segment A27
immunoglobulin light chain	1	D86990
immunoglobulin light chain	1	D86996
(low match)
immunoglobulin light chain	1	L29157
variable region (lambda IIIb
subgroup) from IgM
rheumatoid factor
immunoglobulin M heavy	1	S50735
chain V region = anti-lipid A
antibody
immunoglobulin mu (IGHM)	9	X57086	+	+		+		+
immunoglobulin mu binding	1	L24544	T	+			+
protein 2 (IGHMBP2)
immunoglobulin	1	Z33642
superfamily, member 2
(IGSF2)
Immunoglobulin VH mRNA	1	X61013
(487 bp) (=M99652
immunoglobulin heavy
chain variable region V3-11
(IGHV@))
imogen 38 (IMOGEN38)	1	Z68747		+	+	+		+
IMP (inosine	1	J05272	+	+	+	+
monophosphate)
dehydrogenase 1
(IMPDH1)
IMP (inosine	2	L39210	+	+	+	+		+
monophosphate)
dehydrogenase 2
(IMPDH2)
inc finger protein 151 (pHZ-	1	Y09723	+	+	+	+		+
67) (ZNF151)
inc finger protein, C2H2,	1	AF011573		+	+
rapidly turned over (ZNF20)
inducible poly(A)-binding	1	U33818	+	+	+	+		+
protein (IPABP)
inducible poly(A)-binding	1	U33818
protein (IPABP) (low
match)
inducible protein	2	L47738	+	+	+	+		+
(Hs.80313)
inhibitor of DNA binding 2,	4	M97796	+	+	+	+	+	+
dominant negative helix-
loop-helix protein (ID2)
inhibitor of kappa light	2	AF044195
polypeptide gene enhancer
in B-cells, kinase complex-
associated protein
(IKBKAP)
inositol 1,3,4-trisphosphate	1	U51336	+	+	+	+	+	+
5/6-kinase
inositol 1,4,5 trisphosphate	1	U23850		+	+	+
receptor type 1 (ITPR1)
inositol 1,4,5-trisphosphate	2	X57206	B	+	+		+
3-kinase B (ITPKB)
inositol monophosphatase	1	S38980
inositol polyphosphate-5-	2	U84400	+	+	+	+		+
phosphatase, 145 kD
(INPP5D)
Ins(1,3,4,5)P4-binding	1	X89399		+				+
protein
insulin-like growth factor 2	5	Y00285	+	+	+	+		+
receptor (IGF2R)
integral membrane protein	1	L38961			+	+		+
1 (ITM1)
integral membrane protein	1	AF038953	T		+		+	+
2C (ITM2C)
integral membrane protein	3	U61734	+	+	+	+	+	+
Tmp21-I (p23)
integrin beta 4 binding	2	AF047433			+			+
protein (ITGB4BP)
integrin, alpha 2b (platelet	3	M34480		+			+
glycoprotein IIb of IIb/IIIa
complex, antigen CD41B)
(ITGA2B)
integrin, alpha 5	4	X06256	+	+	+		+	+
(fibronectin receptor, alpha
polypeptide) (ITGA5)
integrin, alpha L (antigen	6	Y00796
CD11A (p180), lymphocyte
function-associated antigen
1; alpha polypeptide)
(ITGAL)
integrin, alpha M	1	M18044
(complement
componentreceptor 3,
alpha; also known as
CD11b (p170),
macrophage antigen alpha
polypeptide) (ITGAM)
integrin, alpha X (antigen	1	M81695	+	+				+
CD11C (p150), alpha
polypeptide) (ITGAX)
integrin, beta 1 (fibronectin	2	X07979
receptor, beta polypeptide,
antigen CD29 includes
MDF2 MSK12) (ITGB1)
integrin, beta 2 (antigen	32	M15395	+	+		+		+
CD18 (p95), lymphocyte
function-associated antigen
1; macrophage antigen 1
(mac-1) beta subunit)
(ITGB2)
integrin, beta 7 (ITGB7)	1	M68892	+
Integrin-linked kinase (ILK)	1	U40282	+	+	+	+		+
intercellular adhesion	1	J03132	+			+	+	+
molecule 1 (CD54), human
rhinovirus receptor (ICAM1)
intercellular adhesion	1	X15606	+	+	+	+		+
molecule 2 (ICAM2)
intercellular adhesion	6	X69819	+					+
molecule 3 (ICAM3)
intercellular adhesion	1	L27670						+
molecule 4, Landsteiner-
Wiener blood group
(ICAM4)
Interferon consensus	1	M91196	W, T
sequence binding protein 1			lymphoma
(ICSBP1)
Interferon consensus	1	M91196
sequence binding protein 1
(ICSBP1) (low match)
interferon regulatory factor	4	X15949	+	+	+	+
2 (IRF2)
interferon regulatory	4	L05072	+	+	+	+		+
factor1 (IRF1)
interferon regulatory	1	U51127	+	+		+
factor5 (IRF5)
interferon, gamma-	2	M63838	+	+	+	+		+
inducible protein 16 (IFI16)
interferon, gamma-	9	J03909	+	+		+		+
inducible protein 30 (IFI30)
INTERFERON-INDUCED	1	P32455
GUANYLATE-BINDING
PROTEIN 1 (GUANINE
NUCLEOTIDE-BINDING
PROTEIN 1) (non-exact
62%)
interferon-induced protein	3	X84958		+	+	+		+
17 (IFI17)
interferon-induced protein	5	M14660
54 (IFI54)
interferon-inducible (1-8D)	5	X57351	T		+		+	+
interferon-inducible (1-8U)	1	X57352			+		+	+
interferon-related	5	Y10313		+	+			+
developmental regulator 1
(IFRD1)
interferon-stimulated	2	M87503		+		+		+
transcription factor 3,
gamma (48 kD) (ISGF3G)
interleukin 1 receptor, type	1	U64094				+
II (IL1R2)
Interleukin 10 receptor,	1	U08988	T activated		+			+
beta (I.10RB)
interleukin 12 receptor,	2	U03187	+						only found in T cell
beta 1 (IL12RB1)
interleukin 13 receptor,	2	Y09328		+	+	+	+	+
alpha 1 (IL13RA1)
interleukin 16 (lymphocyte	6	U82972		+
chemoattractant factor)
(IL16)
interleukin 18 receptor 1	1	U43672
(IL18R1)
interleukin 2 receptor, beta	9	M26062
(IL2RB)
interleukin 2 receptor,	6	D11086	+		+			+
gamma (severe combined
immunodeficiency) (IL2RG)
interleukin 4 receptor	3	X52425	+	+		+		+
(IL4R)
interleukin 6 receptor	5	X12830		+				+
(IL6R)
interleukin 6 signal	1	M57230
transducer (gp130,
oncostatin M receptor)
(IL6ST)
interleukin 7 receptor	14	M29696	+					+
(IL7R)
interleukin 7 receptor	1	AF043123
(IL7R) (low match)
interleukin 8 (IL8)	8	Y00787	+		+		+		High in activated T
									cells, bone and
									pancreatic islets
interleukin 8 receptor alpha	11	L19591
(IL8RA)
interleukin 8 receptor, beta	14	M94582
(IL8RB)
interleukin enhancer	3	U10323	+	+	+	+	+	+	high in uterus
binding factor 2, 45 kD
(ILF2)
interleukin enhancer	2	U10324
binding factor 3, 90 kD
(ILF3)
interleukin-1 receptor-	2	L76191		+	+	+		+
associated kinase 1
(IRAK1)
interleukin-1 receptor-	1	U52112
associated kinase 1 (low
match)
interleukin-10 receptor,	5	U00672	+	+	+	+
alpha (IL10RA)
interleukin-11 receptor,	7	Z38102		+	+
alpha (IL11RA)
INTERLEUKIN-14	1	P40222
PRECURSOR (IL-14)
(HIGH MOLECULAR
WEIGHT B-CELL
GROWTH FACTOR)
(HMW-BCGF) (non-exact
46%)
intestinal carboxylesterase;	1	U60553		+			+
liver carboxylesterase-2
(ICE)
inversin protein (non-exact	1	AF084367
52%)
IQ motif containing	6	L33075
GTPase activating protein
1 (IQGAP1)
IQ motif containing	1	U51903		+		+
GTPase activating protein
2 (IQGAP2)
isocitrate dehydrogenase 1	1	AF020038	+	+	+	+	+	+
(NADP+), soluble (IDH1)
isocitrate dehydrogenase 2	2	X69433	+	+	+	+	+	+
(NADP+), mitochondrial
(IDH2)
isocitrate dehydrogenase 3	2	U07681			+
(NAD+) alpha (IDH3A)
isocitrate dehydrogenase 3	1	Z68907	+	+	+	+		+
(NAD+) gamma (IDH3G)
isolate Aus3 cytochrome b	1	AF042516
(CYTB)
isolate TzCCR5-179 CCR5	1	AF011524
receptor (CCR5)
isopentenyl-diphosphate	5	X17025	+	+	+	+		+
delta isomerase (IDI1)
Janus kinase 1 (a protein	4	M64174	+	+	+	+		+
tyrosine kinase) (JAK1)
Janus kinase 2 (a protein	1	AF005216
tyrosine kinase) (JAK2)
Jk-recombination signal	2	L07876
binding protein (RBPJK)
JM1 protein	1	AJ005890		+		+
jumonji (mouse) homolog	1	U57592		+	+	+		+
(JMJ)
jun D proto-oncogene	1	X51346	+	+	+	+		+
(JUND)
jun dimerization protein	1	AF111167							only found in germ
junction plakoglobin (JUP)	1	M23410		+	+	+		+
kangai 1 (suppression of	1	U20770	+	+	+	+	+	+
tumorigenicity 6, prostate;
CD82 antigen (R2
leukocyte antigen,
antigen detected by
monoclonal and antibody
IA4)) (KAI1)
karyopherin (importin) beta	2	L39793	+	+	+	+	+	+
1 (KPNB1)
karyopherin (importin) beta	1	U72395	+	+	+	+
2 (KPNB2)
karyopherin alpha 1	1	S75295	+	+	+		+
(importin alpha 5) (KPNA1)
karyopherin alpha 2 (RAG	1	U09559
cohort 1, importin alpha 1)
(DPNA2)
karyopherin alpha 3	1	D89618		+			+
(importin alpha 4) (KPNA3)
karyopherin alpha 4	1	M17887		+	+
(KPNA4)
Katanin (80 kDa) (KAT)	1	AF052432		+	+	+		+
KE03 protein	2	AF064604
Kelch-like ECH-associated	1	D50922
protein 1 (KIAA0132)
(66% aa)
Keratin 8 (KRT8)	1	X74929		+	+	+	+	+
ketohexokinase	1	X78678		+		+	+
(fructokinase) (KHK)
KIAA0001 (KIAA0001)	1	Q15391
(72% aa)
KIAA0001 (KIAA0001)	1	Q15391
(76% aa)
KIAA0001 (KIAA0001)	1	Q15391
(non-exact 72%)
KIAA0002 (KIAA0002)	5	D13627		+	+	+		+
KIAA0005 (KIAA0005)	4	D13630		+	+	+		+
KIAA0010 (KIAA0010)	1	D13635		+				+
KIAA0016 (KIAA0016)	1	D13641	+	+	+	+		+
KIAA0017 (KIAA0017)	2	D87686
KIAA0022 (KIAA0022)	2	D14664		+	+	+
KIAA0023 (KIAA0023)	1	D14689		+
KIAA0024 (KIAA0024)	1	D14694	+	+	+	+		+
KIAA0025 (KIAA0025)	1	D14695		+	+	+	+	+
KIAA0026 (KIAA0026)	2	D14812		+	+	+		+
KIAA0027	1	D25217		+
KIAA0032 (KIAA0032)	2	D25215		+	+	+
KIAA0040 (KIAA0040)	1	D25539	+	+	+	+		+
KIAA0050 (KIAA0050)	4	D26069
KIAA0053 (KIAA0053)	17	D29642	+		+	+
KIAA0057 (KIAA0057)	1	D31762	+	+	+	+	+	+	high in fetal lung
KIAA0058 (KIAA0058)	11	D31767	+	+	+	+		+
KIAA0063 (KIAA0063)	3	D31884	+	+	+	+		+
KIAA0064 (KIAA0064)	1	D31764	+	+	+	+		+
KIAA0066	1	D31886	+	+	+	+		+
KIAA0068	1	D38549		+	+	+	+	+
KIAA0073	3	D38552		+	+	+		+
KIAA0081	2	D42039		+		+		+
KIAA0084	2	D42043	+	+	+	+		+
KIAA0085	26	U30498	+	+	+	+	+	+
KIAA0088	3	D42041	+	+	+	+	+	+
KIAA0090	2	D42044	+	+	+	+	+	+
KIAA0092 (KIAA0092)	1	D42054		+	+	+		+
KIAA0094	3	D42084			+	+
KIAA0095 (KIAA0095)	1	D42085
KIAA0096	1	D43636	+	+	+	+		+
KIAA0097 (KIAA0097)	1	X92474	T	+	+		+
KIAA0099 (KIAA0099)	3	D43951	+	+	+	+	+	+
KIAA0102 (KIAA0102)	2	D14658		+		+	+	+
KIAA0105	1	D14661	B	+			+	+
KIAA0120	2	P37802
KIAA0120 (non-exact,	1	M83106
65%)
KIAA0121 (KIAA0121)	1	D50911	+	+	+	+		+
KIAA0123	1	D21064		+	+	+		+
KIAA0128	1	D50918	+	+	+	+		+
KIAA0129 (KIAA0129)	1	D50919	+	+	+	+
KIAA0130 (KIAA0130)	1	AF055995		+	+	+
KIAA0136	2	D50926
KIAA0137 (KIAA0137)	1	AB004885		+	+	+		+
KIAA0140 (KIAA0140)	1	D50930	+	+		+		+
KIAA0141 (KIAA0141)	3	D50931
KIAA0144 (KIAA0144)	3	D63478	+	+	+	+		+
KIAA0144 (KIAA0144) (low	1	D63478
match)
KIAA0144 (non-exact 61%)	1	Q14157
KIAA0144 (non-exact 65%)	1	Q14157
KIAA0146	2	D63480		+	+	+		+
KIAA0148 (KIAA0148)	1	D63482		+				+
KIAA0154	2	D63876	+	+	+	+		+
KIAA0156	1	D63879		+	+	+		+
KIAA0160	2	D63881
KIAA0161 (KIAA0161)	1	D79983	+	+		+
KIAA0164 (KIAA0164)	3	D79986
KIAA0167 (KIAA0167)	1	D79989		+
KIAA0168 (KIAA0168)	3	D79990		+	+	+		+
KIAA0169	3	D79991
KIAA0171 (KIAA0171)	3	D79993		+	+	+		+
KIAA0174 (KIAA0174)	7	D79996	+	+	+	+		+
KIAA0179	2	D80001		+	+	+		+
KIAA0181	1	D80003		+	+	+		+
KIAA0183	4	D80005	+	+	+	+	+	+
KIAA0184	1	D80006	+	+	+	+		+
KIAA0191 (72% aa)	1	D83776
KIAA0191 (non-exact 77%)	1
KIAA0193 (KIAA0193)	1	D83777	+	+	+	+		+
KIAA0200 (KIAA0200)	1	D83785		+	+	+		+
KIAA0210 (KIAA0210)	3	D86965
KIAA0217	2	D86971	+	+	+	+		+
KIAA0219	2	U77700		+	+	+		+
KIAA0222 (KIAA0222)	1	D86975
KIAA0223	2	D86976
KIAA0229	1	D86982	+	+
KIAA0232 (KIAA0232)	1	D86985		+	+	+		+
KIAA0233 (KIAA0233)	1	D87071
KIAA0235	2	D87078	+	+	+	+
KIAA0239	1	D87076	+	+
KIAA0239 (non-exact 80%)	1	D87076
KIAA0240	1	D87077
KIAA0242	4	D87684	+	+	+	+	+	+
KIAA0248	2	D87435		+	+	+		+
KIAA0249 (KIAA0249)	3	D87436	+	+	+	+		+
KIAA0253	5	D87442	+	+	+	+	+	+
KIAA0254 (KIAA0254)	1	D87443		+	+	+
KIAA0255(KIAA0255)	4	D87444		+	+	+		+
KIAA0262 (KIAA0262)	3	D87451	+	+	+	+		+
KIAA0263 (KIAA0263)	1	D87452	+	+	+	+		+
KIAA0264	3	D87453		+	+	+		+
KIAA0268	1	D87742	+	+		+		+
KIAA0269	1	Q92558
KIAA0275 (KIAA0275)	13	D87465	+	+		+		+
KIAA0304 (KIAA0304)	2	AB002302	+	+	+	+	+	+
KIAA0308	2	AB002306		+	+			+
KIAA0310 (KIAA0310)	1	AB002308		+	+	+		+
KIAA0314 (=U96635	3	AB002312
M. musculus ubiquitin
protein ligase Nedd-4)
KIAA0315 (KIAA0315)	4	AB002313		+	+	+	+	+
KIAA0325 (=L08505	2	AB002323
R. norvegicus cytoplasmic
dynein heavy chain (MAP
1C))
KIAA0329 (KIAA0329)	1	AB002327		+	+	+		+
KIAA0330	1	AB002328	+	+	+			+
KIAA0332	1	AB002330		+	+	+		+
KIAA0333	2	AB002331		+	+	+	+	+
KIAA0336 (KIAA0336)	3	AB002334	+	+	+	+		+
KIAA0336 (KIAA0336) (low	1	AB002334
match)
KIAA0342 (KIAA0342)	1	AB002340		+	+			+
KIAA0344 (KIAA0344)	2	AB002342				+		+
KIAA0354 (KIAA0354)	1	AB002352	+	+	+	+		+
KIAA0365 (KIAA0365)	3	AB002363	+	+	+	+	+	+
KIAA0370	6	AB002368		+	+	+	+	+
KIAA0372 (KIAA0372)	1	AB002370
KIAA0373 (KIAA0373)	1	AB002371		+		+
KIAA0375 (KIAA0375)	1	AB002373		+		+
KIAA0377 (KIAA0377)	1	AB002375		+		+	+
KIAA0379	1	AB002377				+
KIAA0379 (non-exact,	1	AB002377
65%)
KIAA0380 (KIAA0380)	1	AB002378	+	+		+		+
KIAA0380 (KIAA0380)	1	AB002378
(60% aa)
KIAA0382 (KIAA0382)	2	AB002380		+	+	+		+
KIAA0383	1	AB002381
KIAA0386 (KIAA0386)	5	AB002384
KIAA0392	1	AB002390
KIAA0397 (KIAA0397)	4	AB007857		+	+	+	+	+
KIAA0403	3	AB007863
KIAA0404	1	AB007864		+		+
KIAA0409	1	AB007869		+		+
KIAA0421	1	AB007881	+	+	+			+
KIAA0424 (non-exact 82%)	1	AB007884
KIAA0428 (KIAA0428)	9	Y13829
KIAA0429 (KIAA0429)	2	AB007889	+	+	+	+		+
KIAA0430 (KIAA0430)	2	AB007890							only in ovary
KIAA0432 (KIAA0432)	2	U86753	T	+	+
KIAA0435 (KIAA0435)	1	AB007895
KIAA0438 (KIAA0438)	1	AB007898		+	+	+		+
KIAA0447 (KIAA0447)	3	AB007916	+	+	+	+		+
KIAA0449	1	AB007918		+				+
KIAA0456	1	AB007925		+	+	+		+
KIAA0458 (KIAA0458)	1	AB007927
KIAA0462	1	AB007931	+	+	+	+		+
KIAA0465	1	AB007934		+	+	+	+	+
KIAA0476 (KIAA0476)	1	AB007945		+	+	+
KIAA0489	1	AB007958
KIAA0494 (KIAA0494)	1	AB007963	+	+	+	+		+
KIAA0515	1	AB011087	+	+	+	+		+
KIAA0521	3	AB011093	+	+				+
KIAA0525	1	AB011097		+		+
KIAA0530	1	AB011102		+	+	+
KIAA0532	1	AB011104	+	+	+	+		+
KIAA0537 (KIAA0537)	1	AB011109
KIAA0540	1	AB011112	+	+	+	+		+
KIAA0543	1	AB011115			+	+		+
KIAA0544	1	AB011116		+	+	+		+
KIAA0549	2	AB011121		+	+	+		+
KIAA0551	2	AB011123		+				+
KIAA0554	8	AB011126		+	+	+		+
KIAA0561	1	AB011133		+		+
KIAA0562 (KIAA0562)	1	AB011134
KIAA0563 (KIAA0563)	1	AB011135
KIAA0569 (KIAA0569)	2	AB011141		+	+	+		+
KIAA0571 (KIAA0571)	2	AB011143		+	+	+
KIAA0573	1	AB011145		+		+		+
KIAA0576	1	AB011148
KIAA0580	1	AB011152
KIAA0584	1	AB011156		+
KIAA0592	3	AB011164	+	+	+	+		+
KIAA0596	1	AB011168		+	+
KIAA0598 (KIAA0598)	1	AB011170		+	+	+
KIAA0608	1	AB011180			+	+
KIAA0614	2	AB014514	+	+	+	+		+
KIAA0615 (KIAA0615)	1	AB014515
KIAA0621	1	AB014521		+	+			+
KIAA0648	1	AB014548		+	+	+		+
KIAA0652 (KIAA0652)	1	AB014552	+	+	+	+		+
KIAA0668	1	AB014568
KIAA0669	1	AB014569
KIAA0671 (KIAA0671)	1	AB014571			+	+		+
KIAA0675 (KIAA0675)	1	AB014575		+		+	+
KIAA0676	1	AB014576		+	+	+		+
KIAA0677 (KIAA0677)	2	AB014577		+	+	+	+	+
KIAA0678	1	AB014578	+	+	+	+		+
KIAA0679	6	AB014579		+	+	+		+
KIAA0680 (KIAA0680)	1	AB014580
KIAA0692	1	AB014592	+	+	+	+		+
KIAA0697	1	AB014597
KIAA0699	1	AB014599	+	+	+	+		+
KIAA0700	1	AB014600		+	+	+		+
KIAA0737 (KIAA0737)	3	AF014837	+	+	+	+		+
KIAA0748 (KIAA0748)	2	AB018291		+
KIAA0763 (KIAA0763)	2	AB018306	+	+	+	+		+
KIAA0769 (KIAA0769)	2	AB018312		+	+	+		+
KIAA0782	1	AB018325	+	+		+			high in BPH stroma
KIAA0796	1	AB018339		+	+	+		+
KIAA0798 (KIAA0798)	1	AB018341
KIAA0823	1	AB020630
KIAA0854	1	AB020661	+	+	+	+		+
KIAA0856	1	AB020663		+	+	+		+
KIAA0860	1	AB020667		+		+
KIAA0862	1	AF054828		+	+	+
KIAA0871 (non-exact 88%)	1	AB020678
KIAA0873	1	AB020680		+	+	+		+
KIAA0892	1	AB020699	+	+	+	+		+
KIAA0906	1	AB020713	+	+	+	+		+
KIAA0991	1	AB023208.1
killer cell lectin-like	1	U11276			+	+		+
receptor subfamily B,
member 1 (KLRB1)
killer cell lectin-like	1	U96846
receptor subfamily C,
member 4 (KLRC4)
kinectin 1 (kinesin receptor)	1	D13629
(KTN1)
kinesin family member 5B	2	X65873		+	+	+
(KIF5B)
kinesin-like DNA binding	1	AB017430	+	+	+	+		+
protein
Kruppel-related DNA-	1	M61869
binding protein (TF6) (low
match)
Kruppel related gene	1	M20675
(clone pHKR1RS)
Kruppel-like zinc finger	3	U51869	+	+	+	+	+	+
protein Zf9
Kruppel-like zinc finger	1	U44975		+	+		+	+
protein Zf9 (non-exact
76%)
kruppel-type zinc finger	1	AB011414.1
protein, ZK1
L apoferritin	3	X03742
lactate dehydrogenase A	3	X02152		+	+	+	+	+
(LDHA)
lactate dehydrogenase A	1	X02152
(LDHA) (non-exact, 81%)
lactate dehydrogenase B	6	X13794	+	+	+	+	+	+	high in fetal lung
(LDHB)									fibrablast
lactotransferrin (LTF)	1	U07643	+			+		+	high in bone marrow
laminin binding protein (low	1	D28372
score)
laminin receptor 1 (67 kD);	20	X15005	+	+	+	+	+	+	high in many libraries
Ribosomal protein SA
(LAMR1)
laminin receptor homolog	1	S35960
{3′ region}
laminin, gamma 1 (formerly	2	J03202	+	+	+			+
LAMB2) (LAMC1)
latent transforming growth	2	M34057		+	+	+		+
factor beta binding protein
1 (LTBP1)
LAZ3/BCL6	1	Z79581
(=Z79582; D28522/4)
LDLC	2	Z34975	+	+	+	+		+
lecithin-cholesterol	1	M17959
acyltransferase (LCAT)
(non-exact, 66%)
lectin, galactoside-binding,	1	M87842				+
soluble, 2 (galectin 2)
(LGALS2)
lectin, galactoside-binding,	1	L13210	+	+	+	+		+
soluble, 3 binding protein
(galectin 6 binding protein)
(LGALS3BP)
leucine rich repeat (in FLII)	5	AJ223075	+	+	+	+	+	+
interacting protein 1
(LRRFIP1)
leucocyte immunoglobulin-	2	AF072099				+
like receptor-5 (LIR-5)
leucocyte immunoglobulin-	7	AF025530
like receptor-6a (LIR-6)
leucocyte immunoglobulin-	2	U82275		+					only found in CNS
like receptor-7 (LIR-7)
leukemia virus receptor 1	1	L20859	+	+	+	+		+
(GLVR1)
leukocyte adhesion protein	1	M29484
p150, 95 alpha subunit
leukocyte antigen, HLA-A2	3	Y13267
leukocyte immunoglobulin-	3	AF025528		+
like receptor (MIR-10)
leukocyte tyrosine kinase	1	X60702	+						found only in blood
(LTK)
leukocyte-associated Ig-	3	AF013249				+
like receptor 1 (LIAR1)
leukotriene A4 hydrolase	6	J03459	+	+	+	+	+	+
(LTA4H)
leupaxin (LDPL)	2	AF062075	+			+		+
ligase I, DNA, ATP-	1	M36067	B, T	+	+		+	+
dependent (LIG1)
LIM and SH3 protein 1	2	X82456	+	+	+	+	+	+
(LASP1)
LIM domain kinase 2	2	AC002073	+	+	+	+		+
(LIMK2)
line-1 protein	1
Line-1 repeat mRNA with 2	1	U93566	+	+	+	+	+	+
open reading frames
Line-1 repeat with 2 open	1	M22332	+	+	+	+	+	+	high in gastric tumor
reading frames
LINE-1 REVERSE	1	P08547
TRANSCRIPTASE
HOMOLOG
lipase A, lysosomal acid,	4	X76488	+	+	+	+		+
cholesterol esterase
(Wolman disease) (LIPA)
lipase, hormone-sensitive	1	L11706	+	+				+
(LIPE)
LMP7	1	L11045
Lon protease-like protein	2	X74215	+	+	+	+		+
(LONP)
low density lipoprotein-	2	AF058414					+		only in liver
related protein 1 (alpha-2-
macroglobulin receptor)
(LRP1)
low density lipoprotein-	1	M63959		+	+		+	+
related protein-associated
protein 1 (alpha-2-
macroglobulin receptor-
associated protein 1)
(LRPAP1)
low density lipoprotein-	1	M63959
related protein-associated
protein 1 (alpha-2-
macroglobulin receptor-
associated protein 1)
(LRPAP1) (non-exact,
75%)
low-affinity Fc-gamma	1	L08107
receptor IIA
LPS-induced TNF-alpha	9	AF010312	+	+	+	+	+	+
factor (PIG7)
Lst-1	1	U00921	+	+	+	+		+
L-type amino acid	1	AF104032
transporter subunit LAT1
lung resistance-related	1	X79882	+	+	+	+		+
Protein (LRP)
Lymphocyte antigen 75	1	AF011333	B
(LY75)
lymphocyte antigen 9 (LY9)	2	L42621
lymphocyte antigen HLA-	2	L42345
B*4402 and HLA-B*5101
lymphocyte cytosolic	42	J02923
protein 1 (L-plastin) (LCP1)
lymphocyte cytosolic	4	U20158	T
protein 2 (SH2 domain-			lymphoma,
containing leukocyte			T activated
protein of 76 kD) (LCP2)
lymphocyte glycoprotein	2	X04391	+		+
T1/Leu-1
lymphocyte-specific protein	16	M33552	+	+	+	+		+
1 (LSP1)
lymphocyte-specific protein	7	M36881		+				+
tyrosine kinase (LCK)
lymphoid phosphatase	1	AF001847
LyP1
lymphoid-restricted	4	U10485	+		+	+
membrane protein (LRMP)
lymphoid-specific SP100	1	U36500						+
homolog (LYSP100-A)
lymphoma proprotein	2	U33849	+	+	+	+		+
convertase (LPC)
LYSOSOMAL	1	P10619
PROTECTIVE PROTEIN
PRECURSOR
(CATHEPSIN A)
(CARBOXYPEPTIDASE C)
lysosomal-associated	1	J04182	+	+	+	+	+	+
membrane protein 1
(LAMP1)
Lysosomal-associated	1	J04183		+	+	+	+	+
membrane protein 2
(LAMP2)
lysozyme (renal	39	M19045	+	+	+	+		+
amyloidosis) (LYZ)
lysyl-tRNA synthetase	2	D32053	+	+	+	+		+
(KARS)
M phase phosphoprotein	1	X98494
10 (U3 small nucleolar
ribonucleoprotein) (MPP-
10)
M1-type and M2-type	2	X56494
pyruvate kinase
m6A methyltransferase	7	AF014837	+	+		+
(MT-A70)
mab-21 (C. elegans)-like 1	1	U38810		+	+	+		+
(MAB21L1)
MacMarcks	1	X70326	+	+	+	+	+	+
macrophage-associated	1	Z22968		+	+	+		+
antigen (MM130)
MADS box transcription	1	U49020		+	+	+		+
enhancer factor 2,
polypeptide A (myocyte
enhancer factor 2A)
(MEF2A)
MADS box transcription	1	L08895		+	+	+		+
enhancer factor 2,
polypeptide C (myocyte
enhancer factor 2C)
(MEF2C)
major cytoplasmic tRNA-	1	X17516
Val(lAC) (=M33940)
major histocompatibility	1	M95531
complex class I beta chain
(HLA-B)
major histocompatibility	41	Z93949	+	+	+	+		+	high in villous
complex, class I, A (HLA-A)									adenoma
major histocompatibility	1	Z72422
complex, class I, A (HLA-A)
(low match)
major histocompatibility	82	M24097	+	+	+	+	+	+
complex, class I, C (HAL-
C)
major histocompatibility	77	M20022	+	+	+	+		+
complex, class I, E (HLA-E)
major histocompatibility	2	U15085	+	+	+	+		+
complex, class II, DM
BETA (HLA-DMB)
major histocompatibility	10	M57466	+	+	+	+		+
complex, class II, DP beta
1 (HLA-DPB1)
major histocompatibility	9	V00522	+	+	+	+		+
complex, class II, DR beta
1 (HLA-DRB1)
Major histocompatibility	2	M24070		+	+		+	+
complex, class II, Y box-
binding protein I; DNA-
binding protein B (YB1)
malate dehydrogenase 1,	1	D55654	+	+	+	+	+	+
NAD (soluble) (mdh1)
malate dehydrogenase 1,	3	D55654		+	+		+	+
NAD (soluble) (MDH1)
malonyl-CoA	2	AF097832
decarboxylase precursor
maltase-glucoamylase	1	AF016833				+
(mg)
manic fringe (Drosophila)	1	U94352	+	+	+	+		+
homolog (MFNG)
mannose phosphate	1	X76057		+	+	+		+
isomerase (MPI)
mannose phosphate	2	X76057		+	+	+		+
isomerase (mpi)
mannose-6-phosphate	3	X56253		+	+		+	+
receptor (cation
dependent) (M6PR)
mannose-P-dolichol	1	AF038961		+	+	+		+
utilitzation defect 1
(MPDU1)
mannosidase, alpha B,	1	U60885		+		+	+	+
lysosomal (MANB)
mannosyl (alpha-1,3-)-	1	M55621	+	+	+	+	+	+
glycoprotein beta-1,2-N-
acetylglucosaminyltransfer
ase (MGAT1)
map 4q35 repeat region	1	AF064849
MAP kinase-interacting	2	AB000409		+	+	+	+	+
serine/threonine kinase 1
(MKNK1)
MAP/ERK kinase kinase 3	5	U78876		+
(MEKK3)
MAP/ERK kinase kinase 5	1	D84476		+	+		+
(MEKK5)
MAP/microtubule affinity-	4	M80359		+	+			+
regulating kinase 3
(MARK3)
Marenostrin protein	1	Y14441
MASL1	1	AB016816
MAX dimerization protein	3	L06895						+
(MAD)
MaxiK potassium channel	1	AF035046
beta subunit
MBP-2 for MHC binding	1	X65644		+	+	+		+
Protein 2
Meis (mouse) homolog 3	1	U68385		+	+	+		+
(MEIS3)
melanoma-associated	1	M12154
antigen p97
(melanotransferrin)
membrane cofactor protein	4	X59405		+	+	+		+
(CD46, trophoblast-
lymphocyte cross-reactive
antigen) (MCP)
membrane component,	4	D14696		+	+	+	+	+
chromosome 17, surface
marker 2 (ovarian
carcinoma antigen CA125)
(M17S2)
membrane metallo-	2	J03779	B		+	+	+	+
endopeptidase (neutral
endopeptidase,
enkephalinase, CALLA,
CD10) (MME)
membrane protein,	2	M64925		+	+	+	+	+
palmitoylated 1 (55 kD)
(MPP1)
meningioma expressed	1	U94780				+
antigen (MGEA)
meningioma-expressed	1	U73682	+	+		+	+
antigen 11 (MEA11)
Menkes Disease (ATP7A)	1	L06133		+
putative Cu++-transporting
P-type ATPase
metallothionein 2A (MT2A)	1	V00594		+	+	+	+	+
metaxin 1 (MTX1)	1	U46920		+		+		+
methionine	2	X68836	+	+	+	+		+
adenosyltransferase II,
alpha (MAT2A)
methyl-CpG binding	1	Y10746
domain protein 1 (MBD1)
(non-exact 59% aa)
methylene tetrahydrofolate	2	X16396	+	+	+	+		+
dehydrogenase (NAD+
dependent),
methenyltetrahydrofolate
cyclohydrolase (MTHFD2)
methylenetetrahydrofolate	1	J04031		+	+	+	+	+
dehydrogenase (NADP+
dependent),
methenyltetrahydrofolate
cyclohydrolase,
formyltetrahydrofolate
synthetase (MTHFD1)
methyltransferase, putative	2	AJ224442
MHC antigen (HLA-B)	1	U14943
(=L42024)
MHC class 1 region	2	AF055066
MHC class I antigen (HLA-	1	U70863
A2)
MHC class I antigen (HLA-	1	U19736
A33)
MHC class I antigen (HLA-	1	U38975
C)
MHC class I antigen	1	U52813
B*5801 (HLA-B)
MHC class I antigen HLA-A	2	AF015930
(HLA-A)
MHC class I antigen HLA-A	1	U36687
(HLA-A-2402 allele)
MHC class I antigen HLA-	2	X13112
A11K
MHC class I antigen HLA-B	1	U67331
(B*0801 variant)
(=AF028596)
MHC class I antigen HLA-B	1	U67330
(B*0801 variant) (=U88254)
MHC class I antigen HLA-B	1	AF017328
(B*48 allele)
MHC class I antigen HLA-B	1	AF014770
(HLA-B*1502 allele)
MHC class I antigen HLA-B	1	U58643
(HLA-B*40MD)
MHC class I antigen HLA-B	1	AF028596
(HLA-B*4103 allele)
MHC class I antigen HLA-B	1	AF035648
gene (HLA-B*4402 variant
allele)
MHC class I antigen HLA-B	1	U52175
GN00110-B*3910
MHC class I antigen HLA-	1	D83030
Cw*04011
MHC class I antigen	1	U56434
R69772 HLA-A (A*0302)
MHC class I antigen	1	U58469
SHCHA (HLA-B*4403
variant)
MHC class I	1	U06697
histocompatibility antigen
(HLA-B) (clone C21/14)
MHC class I HLA B71	2	L07950
MHC class I HLA-A	1	Flp
(Aw33.1)
MHC class I HLA-B	1	U18660
MHC class I HLA-B (HLA-	1	U18661
B-07ZEL allele) (=X86704)
MHC class I HLA-B (HLA-	1	U28759
B-08NR allele)
MHC class I HLA-B*3512	1	L76094
MHC class I HLA-B41	3	U17572
variant (=U17572)
MHC class I HLA-B44.2	1	M24038
chain
MHC class I HLA-B51-	1	L41086
cd3.3
MHC class I HLA-C allele	2	Z33459
MHC class I HLA-Cw*0304	1	D64150
(=M84172; M99389)
MHC class I HLA-Cw*0803	3	Z15144
MHC class I HLA-Cw6	1	M28206
MHC class I HLA-J antigen	1	L56139
MHC class I lymphocyte	1	M19670
antigen A2 (A2.1) variant
DK1
MHC class I mic-B antigen	1	X91625
MHC class I polypeptide-	1	L14848				+
related sequence A (MICA)
MHC class I protein HLA-C	1	U61274
heavy chain (C*0701new
allele) (=AF017331)
MHC class II DNA	1	L18885
Sequence (clone A37G7-
1C11)
MHC class II DQ-alpha	1	M16995	+		+	+		+
associated with DRw6,
DQw1 protein
MHC class II DQ-beta	2	M17564		+		+		+
associated with DR2,
DQw1 protein
MHC class II HAL-DQ-	1	M33842
LTR5 (DQ, w8) DNA
fragment, long terminal
repeat region
MHC class II hla-dr alpha-	1	J00195
chain
(=J00197; M60334; K011171;
J00194; M60333; X00274)
MHC class II HLA-DRB1	1	AF007883
MHC class II HLA-DRw11-	1	M21966
beta-I chain (DRw11.3)
MHC class II lymphocyte	1	M23907
antigen (DPw4-beta-1)
MHC CLASS II	1	P33076
TRANSACTIVATOR CIITA
(non-exact 57%)
MHC HLA-E2.1 (=X87679)	1	M32507
MHC HLA-E2.1 (alpha-2	1	M32507
domain) (low match)
Mi-2 autoantigen 240 kDa	1	U08379
protein (non-exact 84%)
microsomal stress 70	1	U04735
protein ATPase core (stch)
microtubule-associated	1	U19727	+	+	+	+		+
protein 4 (MAP4)
microtubule-associated	1	X73882
protein 7 (MAP7)
mineralocorticoid receptor	2	M16801		+		+		+
(aldosterone receptor)
(MLR)
minichromosome	1	X62153		+	+	+		+
maintenance deficient
(S. cerevisiae)
3 (MCM31)
minichromosome	1	AB011144		+	+	+		+
maintenance deficient
(S. cerevisiae)
3-associated
protein (MCM3AP)
minichromosome	2	X74795	+	+	+	+	+	+
maintenance deficient
(S. cerevisiae)
5 (cell division
cycle 46) (MCM5)
mitochondiral cytochrome b	1	AF042517
(CYTB)
mitochondrial 16S rRNA	11	Z70759
mitochondrial ATP	2	X59066
synthase (F1-ATPase)
alpha subunit
mitochondrial ATP	1	X69907
synthase c subunit (P1
form)
mitochondrial cytochrome b	6	AF042508
(CYTB)
mitochondrial cytochrome b	1	AB006202
small subunit of complex II
mitochondrial	1	P00395
CYTOCHROME C
OXIDASE POLYPEPTIDE I
mitochondrial	1	P00403
CYTOCHROME C
OXIDASE POLYPEPTIDE
II
mitochondrial cytochrome	2	P00403
C oxidase subunit II
mitochondrial cytochrome	5	U12691
oxidase subunit II (COII)
(=U12692 Hsa4
mitochondrion cytochrome
oxidase subunit II)
mitochondrial DNA loop	1	X89763
attachment sequences
(clone LAS34)
mitochondrial DNA	1	U94703		+
polymerase accessory
subunit precursor (MtPolB)
nuclear gene encoding
mitochondrial protein,
mitochondrial DNA,	1	X93334
complete genome
mitochondrial genes for	8	V00710
several tRNAs (Phe, Val,
Leu) and 12S and 16S
ribosomal RNAs.
mitochondrial genes for	3	V00660
tRNA (Phe) and 12S rRNA
(fragment)
mitochondrial inner	1	AF106622
membrane preprotein
translocase Tim17a
mitochondrial isolate Afr7	1	AF042503
cytochrome b(CYTB)
mitochondrial loop	1	X89843
attachment sequence
(clone LAS88)
mitochondrial NADH	14	AF014893
dehydrogenase subunit 2
(ND2)
mitochondrial translational	1	L34600		+	+	+		+
initiation factor 2 (MTIF2)
mitochondrion cytochrome b	1	U09500
mitogen inducible gene	1	Z24725		+	+	+		+
mig-2
mitogen inducible gene	1	Z24725
mig-2 (non-exact, 71%)
mitogen-activated protein	2	U43784		+	+	+		+
kinase-activated protein
kinase 3 (MAPKAPK3)
MLN51	2	X80199		+	+	+	+	+
MLN64 (=D38255 CAB1)	1	X80198	+	+	+	+
moesin (MSN)	14	M69066	+	+	+	+		+
monocytic leukaemia zinc	2	U47742		+	+	+		+
finger protein (MOZ)
MOP1 ( )	2	U29165
motor protein (Hs.78504)	2	D21094	+	+	+	+		+
mouse double minute 2,	1	U39736			+	+
human homolog of; p53-
binding protein (MDM2)
M-phase phosphoprotein 6	1	X98263		+	+	+		+
(MPP-6)
M-phase phosphoprotein,	1	X98260
mpp11
MPS1	1	L20314
Mr 110,000 antigen	2	D64154		+		+	+	+
MRC OX-2, V-like region	1	X05324
(=M17227)
mu-adaptin-related protein-	1	Y08387
2; mu subunit of AP-4 (MU-
ARP2)
multifunctional polypeptide	1	X53793	+	+	+	+		+
similar to SAICAR
synthetase and AIR
carboxylase (ADE2H1)
murine leukemia viral (bmi-	1	L13689		+		+		+
1) oncogene homolog
(BMI1)
mutant (Daudi) beta2-	44	X07621
microglobulin
mutated in colorectal	1	M62397		+	+			+
cancers (MCC)
myeloid cell leukemia	9	L08246	+	+	+	+	+	+
sequence 1 (BCL2-related)
(MCL1)
myeloid cell nuclear	11	M81750	+					+
differentiation antigeN
(MNDA)
myeloid differentiation	4	U70451		+	+	+		+
primary response gene
(88) (MYD88)
myeloid leukemia factor 2	3	U57342		+		+		+
(MLF2)
myeloid/lymphoid or mixed-	8	U89867		+	+	+		+
lineage leukemia (trithorax
(Drosophila) homolog);
translocated to, 7 (MLLT7)
MYH9 (cellular myosin	1	M81105
heavy chain)
myomesin (M-protein) 2	1	X69089
(165 kD) (MYOM2)
myosin IE (MYO1E)	11	X98411		+		+
myosin light chain kinase	1	U48959	+		+	+		+
(MLCK)
myosin phosphatase,	2	D87930		+	+	+		+
target subunit 1 (MYPT1)
myosin regulatory light	2	D50372
chain (=U26162)
myosin VIIa (low match 71)	1	U55208
myosin, heavy polypeptide	3	M81105	+	+	+	+		+
9, non-muscle (MYH9)
myosin, light polypeptide,	6	X54304	+	+	+	+	+	+
regulatory, non-sarcomeric
(20 kD) (MLCB)
myosin-I beta	1	X98507	+	+	+	+		+
myristoylated alanine-rich	1	D10522		+	+
protein kinase C substrate
(MARCKS, 80K-L) (MACS)
myxovirus (influenza)	1	M30817	+	+	+	+		+
resistance 1, homolog of
murine (interferon-inducible
protein p78) (MX1)
myxovirus (influenza)	3	M30818			+
resistance 2, homolog of
murine (MX2)
N-acetylgalactosaminidase,	2	M62783		+	+		+	+
alpha-(NAGA)
N-acetylglucosamine	1	L03532		+	+	+		+
receptor 1 (thyroid)
(NAGR1)
NACP/alpha-synuclein	2	U46896
N-acylaminoacyl-peptide	1	D38441		+	+		+	+
hydrolase (APEH)
N-acylsphingosine	11	U47674	+	+	+	+		+
amidohydrolase (acid
ceramidase) (ASAH)
NAD+-specific isocitrate	1	U49283	+	+	+	+	+	+
dehydrogenase beta
subunit precursor
(encoding mitochondrial
protein)
NADH dehydrogenase	1	U53468.1	+	+	+	+	+	+
(ubiquinone) 1 alpha
subcomplex, 5 (13 KD, B13)
(NDUFA5)
NADH dehydrogenase	1	AF047181		+	+	+	+	+
(ubiquinone) 1 beta
subcomplex, 5 (16 KD,
SGDH) (NDUFB5)
NADH dehydrogenase	1	AF050640		+	+	+	+	+
(ubiquinone) Fe-S protein 2
(49 KD) (NADH-coenzyme
Q eductase) (NDUFS2)
NADH dehydrogenase	1	M22538			+	+	+	+
(ubiquinone) flavoprotein 2
(24 KD) (NDUFV2)
NADH: ubiquinone	2	AF053070	+	+	+	+	+	+
dehydrogenase 51 KDa
subunit (NDUFV1)
NADH-CYTOCHROME B5	1	P00387
REDUCTASE (B5R)
(50% aa)
NADH-UBIQUINONE	1	P03886
OXIDOREDUCTASE
CHAIN 1
Nardilysin (N-arginine	2	U64898	+	+	+	+		+
dibasic convertase)
(NRD1)
nascent-polypeptide-	5	X80909		+	+		+	+
associated complex alpha
polypeptide (NACA)
natural killer cell group 7	8	S69115				+		+
sequence (NKG7)
natural killer cell transcript	19	M32011	+
4 (NK4)
natural killer-associated	1	U30274	+						blood only
transcript 3 (NKAT3)
natural killer-associated	1	AF022045	+						blood only
transcript 5 (NKAT5)
natural killer-tumor	1	L04288	B		+		+	+
recognition sequence
(NKTR)
N-deacetylase/N-	2	AF042084	+	+		+		+
sulfotransferase (heparan
glucosaminyl) 2 (NDST2)
Ndr protein kinase	3	Z35102		+
Nedd-4-like ubiquitin-	1	U96113
Protein ligase WWP1
nel (chicken)-like 2	3	D83018		+	+
(NELL2)
N-ethylmaleimide-sensitive	1	U39412		+			+
factor attachment protein,
alpha (NAPA)
N-ethylmaleimide-sensitive	1	U78107		+	+	+
factor attachment protein,
gamma (NAPG)
neural precursor cell	3	X92544	+	+	+	+		+	high in testis
expressed,
developmentally down-
regulated 5 (NEDD5)
neural precursor cell	1	D23662	+	+	+	+	+	+
expressed,
developmentally down-
regulated 8 (NEDD8)
neuregulin 1 (NRG1)	1	U02330		+		+	+
neuroblastoma RAS viral	4	AB020692	+	+	+	+		+
(v-ras) oncogene homolog
(NRAS)
Neuroblastoma RAS viral	1	X68286
(v-ras) oncogene homolog
(NRAS) (low match)
Neurofibromin 2 (bilateral	1	S73853		+				+
acoustic neuroma) (NF2)
neuronal apoptosis	2	U19251	+	+	+			+
inhibitory protein (NAIP)
neuronal cell adhesion	1	AB002341		+	+	+		+
molecule (NRCAM)
neuropathy target esterase	1	AJ004832		+	+	+		+
(NTE)
neuropeptide Y3 receptor,	1	D28433
5′UTR (low score)
neurotrophic tyrosine	14	X03541	+	+	+	+	+	+
kinase, receptor, type 1
(NTRK1)
neutrophil cytosolic factor 4	2	U50720
(40 KD)
NG31	1	AF129756
NGAL (=X83006)	1	X99133
nibrin (NBS)	1	AF051334
NIK	1	AB014587		+	+	+		+
Ninjurin 1; nerve injury-	1	U72661		+	+	+		+
induced protein-1
nitrilase 1 (NIT1)	1	AF069987
(=AF069984)
NKG2-D (low match) (non-	1	X54870
exact, 58%)
Nmi	1	U32849
N-myristoyltransferase 1	1	AF043324		+	+	+	+	+
(NMT1)
No arches-like (zebrafish)	1	U79569		+	+	+		+
zinc finger protein (NAR)
non-histone chromosome	1	D50420	+	+	+	+	+	+
protein 2 (S. cerevisiae)-
like 1 (NHP2L1)
non-muscle (fibroblast)	1
tropomyosin
non-muscle alpha-actinin	1	U48734
non-muscle myosin alkali	3	M22918	+	+	+	+	+	+	High in fetal adrenal
light chain (Hs. 77385)									gland and BPH
									stroma
non-neuronal enolase (EC	1	X16289
4.2.1.11)
non-receptor tyrosine	1	M33689
phosphatase 1
normal keratinocyte	3	X53778	+	+	+	+	+	+	high in many libraries
substraction library mRNA,
clone H22a
notch group protein (N)	3	M99437
novel protein	1	X99961
novel T-cell activation	1	X94232		+	+	+		+
protein
N-ras protein NRU	1	A60196
N-sulfoglucosamine	1	U60111		+				+
sulfohydrolase
(sulfamidase) (SGSH)
nsulin induced gene 1	1	U96876	+	+	+	+	+	+
(INSIG1)
ntegrin, alpha 4 (antigen	3	L12002	+			+
CD49D, alpha 4 subunit of
VLA-4 receptor) (ITGA14)
nterferon, gamma-inducible	1	M63838	+	+	+	+		+
protein 16 (IFI16)
nterleukin 1, beta (IL1RB)	1	M15330
nuclear antigen H731-like	2	U83908		+	+	+		+
protein
nuclear antigen Sp100	4	U36501	+			+	+	+
(SP100)
Nuclear antigen Sp100	1	P23497
(SP100) (85% aa)
Nuclear antigen Sp100	1	P23497
(SP100) (89% aa)
nuclear autoantigenic	1	M97856	+		+
sperm protein (histone-
binding) (NASP)
nuclear corepressor KAP-1	1	U78773
(KAP-1) (=U95040; X97548
TIF1beta zinc finger
protein)
Nuclear domain 10 protein	4	U22897	+	+	+	+	+	+
(NDP52)
Nuclear factor (erythroid-	1	S74017		+	+	+	+	+
derived 2)-like 2 (NFE2L2)
Nuclear factor of kappa	2	M58603		+	+		+	+
light polypeptide gene
enhancer in B-cells 1
(p105) (NFKB1)
nuclear factor of kappa	3	M69043		+	+	+		+
light polypeptide gene
enhancer in B-cells
inhibitor, alpha (NFKBIA)
nuclear factor related to	1	U08191		+	+	+		+
kappa B binding protein
(NFRKB)
nuclear mitotic apparatus	3	Z11583	+	+	+	+	+	+
protein 1 (NUMA1)
nuclear receptor	1	X97674
coactivator 2 (GRIP1)
nuclear receptor	2	AF010227	+	+	+			+
coactivator 3 (AIB3)
nuclear receptor	22	X77548		+	+	+	+	+
coactivator 4 (ELE1)
nuclear receptor interacting	1	X84373		+		+		+
protein 1 (NRIP1)
nuclear respiratory factor 1	1	U02683	B	+	+
(NRF1)
nuclear RNA helicase,	4	U90426	+	+	+	+		+
DECD variant of DEAD box
family (DDXL)
nuclear transcription factor	1	X59711	B
Y, alpha (NFYA)
nuclear transcription factor,	3	U15306		+	+		+
X-box binding 1 (NFX1)
nuclear transport factor 2	1	X07315	+	+	+	+		+
(placental protein 15)
(PP15)
nucleobindin (=M96824)	1	U31336
nucleobindin 1 (NUCB1)	2	M96824	+	+	+	+		+
nucleolar phosphoprotein	1	Z34289		+	+
p130 (P130)
nucleolar protein (KKE/D	1	Y12065	+	+	+	+		+
repeat) (NOP56)
nucleolar protein (MSP58)	1	AF015308
nucleolar protein 1 (120 KD)	1	M32110	+	+
(NOL1)
nucleolar protein p40	1	U86602	+	+	+	+		+
nucleolin (NCL)	2	M60858	+	+	+	+		+
nucleophosmin (nucleolar	14	M28699	+	+	+	+		+
phosphoprotein B23,
numatrin) (NPM1)
nucleophosmin-retinoic	1	U41742
acid receptor alpha fusion
protein NPM-RAR long
form
nucleoporin (NUP358)	2	L41840
(=D42063 RanBP2 (Ran-
binding protein 2))
nucleoporin 153 KD	1	Z25535
(NUP153)
nucleoporin 98 KD (NUP98)	1	U41815
nucleosome assembly	1	D28430
protein
nucleosome assembly	1	M86667		+	+	+		+
protein 1-like 1 (NAP1L1)
nucleosome assembly	2	U77456	+	+	+	+		+
protein 1-like 4 (NAP1L4)
nucleosome assembly	1	D28430
protein, 5′UTR
olfactory receptor (OR7-	1	U86281
141)
OLFACTORY RECEPTOR-	1	P34982
LIKE PROTEIN HGMP07E
(OR17-4) (non-exact 65%)
oligodendrocyte myelin	7	L05367		+
glycoprotein (OMG)
O-linked N-	1	U77413	+	+		+	+	+
acetylglucosamine
(GlcNAc) transferase
(UDP-N-
acetylglucosamine: polypep
tide-N-acetylglucosaminyl
transferase) (OGT)
oncofetal trophoblast	1	A53531
glycoprotein 5T4 precursor
(non-exact 55%)
Oncogene TIM (TIM) (non-	1	U02082
exact 84%)
ORF (Hs.77868)	1	M68864	+	+	+	+	+	+
ORF1; MER37; putative	1	U49973
transposase similar to pogo
element Length = 454
origin recognition complex,	2	U27459				+
subunit 2 (yeast homolog)-
like (ORC2L)
origin recognition complex,	1	AF022108
subunit 4 (yeast homolog)-
like (ORC4L) (low match)
ornithine aminotransferase	2	M23204		+	+	+
(gyrate atrophy) (OAT)
ornithine decarboxylase	1	M20372
(ODC)
ornithine decarboxylase	11	D78361	+	+	+	+	+	+	High in pancreas,
antizyme, ORF 1 and ORF 2									and activated T cells
orphan receptor	2	U07132	+	+	+	+		+
(Hs. 100221)
OS-9 precurosor	6	AB002806	+	+	+	+	+	+
osteonectin (=X82259 BM-	1	D28381
40)
ovel centrosomal protein	1	AB008515		+	+	+		+
RanBPM (RANBPM)
over-expressed breast	1	L34839
tumor protein
oviductal glycoprotein 1,	1	U09550			+	+	+
120 kD (OVGP1)
oxidase (cytochrome c)	1	X80695		+	+	+	+	+
assembly 1-like (OXAIL)
oxoglutarate	4	D10523	T	+	+		+	+
dehydrogenase (lipoamide)
(OGDH)
oxysterol binding protein	1	M86917	+	+			+
(OSBP)
OZF	1	X70394		+	+	+		+
OZF (non-exact zinc finger)	1	X70394
p21/Cdc42/Rac1-activated	2	U51120	+	+		+
kinase 1 (yeast Ste20-
related) (PAK1)
P35-related protein (=S80990	1	D63392
ficolin)
p40	1	U93569
p40phox (=U50720)	1	X77094
P47 LBC oncogene	4	U03634
p53-induced protein	1	AF010315	+	+	+	+
(PIG11)
p54nrb (low match)	1	Y11287
p62 nucleoporin	1	X58521
p63 mRNA for	1	X69910	+	+	+	+		+
transmembrane protein
PAC clone DJ0701O16	1	Q07108
from 7q33-q36 (non-exact
54%)
palmitoyl-protein	10	U44772		+	+	+		+
thioesterase (ceroid-
lipofuscinosis, neuronal 1,
infantile; Haltia-Santavuori
disease) (PPT)
papillary renal cell	1	X99720	+	+	+	+	+	+
carcinoma (translocation-
associated) (PRCC)
PAR protein	1	AF115850		+		+
partial EST (clone c-1gh04)	1	Z43627
PAX3/forkhead	1	U02368
transcription factor gene
fusion
paxillin (PXN)	4	D86862		+	+	+		+
PBK1 protein	2	AJ007398	+	+	+	+		+
PBS-EST (nz92e01.s1	1	AA732534
NCI_CGAP_GCB1 clone
IMAGE: 1302936) (low
score)
PDZ domain protein	1	AJ224747	+			+		+
(Drosophila inaD-like)
(INALD)
PEBP2aC Runt domain	1	Z38108
encoding gene (=Z35728)
peptidase D (PEPD)	1	J04605
peptidylprolyl isomerase A	3	Y00052		+	+	+	+	+	high in many libraries
(cyclophilin A) (PPIA)
peptidylprolyl isomerase D	2	L11667	T	+	+		+	+
(cyclophilin D)(PPID)
peptidylprolyl isomerase E	1	AF042386		+	+		+	+
(cyclophilin E) (PPIE)
PERB11.1 (=U56942 MHC	1	U69630
class I chain-related protein
A)
perforin 1 (preforming	14	M28393
protein) (PRF1)
peroxisomal acyl-CoA	2	X86032
thioesterase (PTE1)
Peroxisomal acyl-	1	X71440		+	+	+	+	+
coenzyme A oxidase
peroxisomal farnesylated	1	X75535		+	+	+	+	+
protein (PXF)
phorbol-12-myristate-13-	1	D90070	B, W
acetate-induced protein
(PMAIP1)
phosphate carrier	1	X77337
(mitochondrial gene?)
Phosphate carrier,	3	X60036	+	+	+	+		+
mitochondrial (PHC)
phosphate	1	L28957	T		+		+
cytidylyltransferase 1,
choline, alpha isoform
(PCYT1A)
PHOSPHATIDATE	1	Q92903
CYTIDYLYLTRANSFERAS
E (CDP-DIGLYCERIDE)
phosphatidylinositol 3-	2	U57843
kinase delta catalytic
subunit
phosphatidylinositol 4-	3	AB005910	+	+	+	+		+
kinase, catalytic, beta
polypeptide (PIK4CB)
phosphatidylinositol glycan,	1	L19783		+	+	+	+	+
class H (PIGH)
phosphatidylinositol	2	D30037
transfer protein (PI-TPbeta)
phosphatidylinositol	2	X98654	B, T	+
transfer protein,			lymphoma
membrane-associated
(PITPNM)
phosphatidylinositol	1	X98654
transfer protein,
membrane-associated
(PITPNM) (non-exact 64%)
phosphatidylinositol-4-	1	U14957			+		+
phosphate 5-kinase, type
II, alpha (PIP5K2A)
phosphatidylinositol-4-	1	U85245		+	+	+		+
phosphate 5-kinase, type
II, beta (PIP5K2B)
phosphodiesterase 7A	1	L12052	B, W	+	+		+
(PDE7A)
phosphodiesterase IB	1	U56976		ON-
(PDES1B)				LY
phosphoglucomutase 1	2	M83088		+	+	+		+
(PGM1)
phosphogluconate	1	U30255			+
dehydrogenase (PGD)
phosphoglycerate kinase 1	12	V00572
(PGK1)
phosphoglycerate mutase	3	J04173	+	+	+	+	+	+
1 (brain) (PGAM1)
phosphoglycerate mutase	1	M55673		+	+			+
2 (muscle) (PGAM2)
phosphoinositide-3-kinase,	1	Z29090		+	+	+
catalytic, alpha polypeptide
(PIK3CA)
phosphoinositide-3-kinase,	4	U86453		+	+	+		+
catalytic, delta polypeptide
(PIK3CD)
phosphoinositide-3-kinase,	1	X83368
catalytic, gamma
polypeptide (PIK3CG)
phospholipase C	1	X14034
phospholipase C, delta 1	2	U09117		+	+	+		+
(PLCD1)
phospholipase C, gamma 1	1	M34667	+	+	+	+		+
(formerly subtype 148)
(PLCG1)
phospholipid scramblase	1	AF008445
phosphoribosyl	1	D61391		+	+			+
pyrophosphate synthetase-
associated protein 1
(PRPSAP1)
phosphoribosylglycinamide	3	X54199		+	+	+	+	+
formyltransferase,
phosphoribosylglycinamide
synthetase,
phosphoribosylaminoimida
zole synthetase (GART)
phosphorylase kinase,	3	D38616		+	+	+	+	+
alpha 2 (liver), glycogen
storage disease IX
(PHKA2)
phosphorylase, glycogen;	1	U47025	+	+	+			+
brain (PYGB)
phosphorylase, glycogen;	1	U47025
brain (PYGB) (low match,
non-exact, 75%)
phosphorylase, glycogen;	1	Y15233		+	+	+		+
liver (Hers disease,
lycogen storage disease
type VI) (PYGL)
phosphorylation regulatory	2
protein HP-10
phosphotidylinositol	1	D30036	+	+	+	+		+
transfer protein (PITPN)
pigment epithelium-derived	1	U29953	+	+	+	+	+	+
factor (PEDF)
pim-1 oncogene (PIM1)	1	M24779	+	+	+			+
pinin, desmosome	1	U77718	B,
associated protein (PNN)			monocyte, T
			lymphoma
placenta (Diff33)	5	U49188		+	+	+		+
placenta (Diff33) (non-	1	U49188
exact, 69%)
placenta (Diff48)	18	U49187	+
placenta (Diff48) (low	1	U49187
match)
placenta(Diff48) (low	1	U49187
match)
plasminogen activator,	1	X74039		+		+		+
urokinase receptor
(PLAUR)
platelet factor 4 (PF4)	1	M25897			+			+
platelet/endothelial cell	8	M37780		+	+	+	+	+
adhesion molecule (CD31
ntigen) (PECAM1)
platelet-activating factor	4	U89386		+	+	+
acetylhydrolase 2 (40 kD)
(PAFAH2)
platelet-activating factor	1	U72342	+	+	+	+	+	+
acetylhydrolase, isoform lb,
alpha subunit (45 kD)
(PAFAH1B1)
platelet-activating factor	1	D10202		+				+
receptor (PTAFR)
pleckstrin (PLEK)	10	X07743			+	+		+
pleckstrin (PLEK) (low	1	X07743
match)
pleckstrin homology, Sec7	4	M85169	+	+		+		+
and coiled/coil domains
1(cytohesin 1) (PSCD1)
pleckstrin homology, Sec7	4	L06633	+			+
and coiled/coil domains,
binding protein (PSCDBP)
pM5 protein	1	X57398	+	+	+	+		+
PMP69	2	Y14322
poly (ADP-ribose)	1	X56140
polymerase (NAD (+) ADP-
ribosyltransferase)
(=X16674)
poly(A) polymerase (PAP)	1	X76770	+	+	+	+		+
poly(A)-binding protein-like	19	Y00345	+	+	+	+	+	+
1 (PABPL1)
poly(rC)-binding protein 1	3	X78137	+	+	+	+	+	+
(PCBP1)
polyadenylate binding	1	U75686
protein
polycystic kidney disease 1	5	U24498
(autosomal dominant)
(PKD1)
polymerase (DNA	1	D29013		+			+	+
directed), beta (POLB)
polymerase (DNA	6	D84103
directed), gamma (POLG)
polymerase (RNA) II (DNA	1	X63564	+	+	+	+	+	+
directed) polypeptide A
(220 kD) (POLR2A)
polymyositis/scleroderma	1	L01457	+	+	+	+	+	+
autoantigen 2 (100 kD)
(PMSCL2)
polypyrimidine tract binding	1	X65372	+	+	+	+	+	+
protein (heterogeneous
nuclear ribonucleoprotein I)
(PTB)
positive regulator of	3	U13021			+
programmed cell death
ICH-1L (lch-1)
postmeiotic segregation	1	M16514	+	+	+	+		+
increased 2-like 12
(PMS2L12)
postmeiotic segregation	1	U38964	+	+	+	+		+
increased 2-like 8
(PMS2L8)
potassium inwardly-	1	D87291				+		+
rectifying channel,
subfamily J, member 15
(KCNJ15)
potassium voltage-gated	1	AF051426		+	+	+		+
channel, KQT-like
subfamily, member 1
(KCNQ1)
POU domain, class 2,	1	Z49194				+
associating factor 1
(POU2AF1)
POU domain, class 2,	2	X13403		+		+
transcription factor 1
(POU2F1)
PPAR binding protein	1	Y13467	+	+	+	+		+
(PPARBP)
PPAR gamma2	1	D83233
pre-B-cell colony-	8	U02020
enhancing factor (PBEF)
prefoldin 1 (PFDN1)	1	Y17392	+	+	+	+	+	+
prefoldin 5 (PRFLD5)	3	D89667	B	+	+		+
prefoldin subunit 3	1	Y17394
(=U96759 von Hippel-
Lindau binding protein
(VBP-1))
pregnancy-associated	1	U28727		+		+			high in placenta
plasma protein A (PAPPA)
pre-mRNA splicing factor	1	U08815	+	+	+	+		+
SF3a (60 kD), similar to
S. cerevisiae
PRP9
(spliceosome-associated
protein 61) (SF3A60)
pre-mRNA splicing factor	1	U08815
SF3a (60 kD), similar
to S. cerevisiae
PRP9
(spliceosome-associated
protein 61) (SF3A60) (low
score)
pre-mRNA splicing factor	2	D28423
SRp20, 5′UTR
preprotein translocase	3	X97544	+	+	+	+		+
(TIM17)
prion protein	1	X82545
prion protein (p27-30)	1	M13899		+	+	+		+
(Creutzfeld-Jakob disease,
Gerstmann-Strausler-
Scheinker syndrome, fatal
familial insomnia) (PRNP)
pristanoyl-CoA oxidase	1	Y11411
(low match)
pristanoyl-CoA oxidase	1	Y11411
(low score)
procollagen-lysine, 2-	1	M98252		+	+	+		+
oxoglutarate 5-dioxygenase
(lysine hydroxylase, Ehlers-
Danlos syndrome type VI)
(PLOD)
procollagen-proline, 2-	1	M24486	+	+	+	+	+	+
oxoglutarate 4-dioxygenase
(proline 4-hydroxylase),
alpha polypeptide 1
(P4HA1)
procollagen-proline, 2-	4	X05130	+	+	+	+	+	+
oxoglutarate 4-dioxygenase
(proline 4-hydroxylase),
beta polypeptide (protein
disulfide isomerase; thyroid
hormone binding protein
p55) (P4HB)
profilin 1 (PFN1)	1	J03191	+	+	+	+	+	+
progesterone receptor-	2	U28918		+
associated p48 protein
(P48)
prohibitin (PHB)	1	S85655		+	+	+	+	+
proliferating cell nuclear	3	J04718	+	+	+	+		+
antigen (PCNA)
proliferation-associated	4	L19184	+	+	+	+	+	+
gene A (natural iller-
enhancing factor A)
(PAGA)
proline-rich protein BstNI	1	S62936
subfamily 2 (PRB2) (non-
exact, 43% aa)
proline-serine-threonine	1	U94778
phosphatase interacting
protein 1 (PSTPIP1)
prolyl endopeptidase	2	X74496		+		+		+
(PREP)
prolylcarboxypeptidase	5	L13977		+	+	+	+	+
(angiotensinase C) (PRCP)
promyelocytic leukemia	1	M80185	+	+	+	+		+
(PML)
properdin P factor,	4	X57748	+
complement (PFC)
pro-platelet basic protein	1	M54995			+	+		+
(includes platelet basic
protein, beta-
thromboglobulin,
connective
tissue-activating peptide III,
neutrophil-activating
peptide-2) (PPBP)
pro-platelet basic protein	7	M54995	+		+		+
(includes platelet basic
protein, beta-
thromboglobulin,
connective tissue-activating
peptide III, neutrophil-
activating peptide-2)
(PPBP)
proprotein convertase	4	U40623
subtilisin/kexin type 7
(PCSK7)
prosaposin (variant	89	D00422	+	+	+	+	+	+
Gaucher disease and
variant metachromatic
leukodystrophy) (PSAP)
prostaglandin-	1	U63846	B	+			+	+
endoperoxide synthase 1
(prostaglandin G/H
synthase and
cyclooxygenase) (PTGS1)
prostaglandin-	2	L15326
endoperoxide synthase 2
(prostaglandin G/H
synthase and
cyclooxygenase) (PTGS2)
prostaglandin-	1	D64068
endoperoxide synthase-1
(=L08404; U84208) (all
promoters)
prostate carcinoma tumor	2	L78132
antigen (pcta-1)
protease inhibitor 1 (anti-	17	K02212		+	+	+	+	+	high in many libraries
elastase), alpha-1-
antitrypsin (PI)
protease inhibitor 2 (anti-	1	M93056				+		+
elastase),
monocyte/neutrophil
(ELANH2) (low match)
proteasome (prosome,	3	L02426	B	+	+			+
macropain) 26S subunit,
ATPase, 1 (PSMC1)
proteasome (prosome,	1	M34079	+	+	+	+		+
macropain) 26S subunit,
ATPase, 3 (PSMC3)
proteasome (prosome,	2	AF020736
macropain) 26S subunit,
ATPase, 4 (PSMC4)
proteasome (prosome,	5	L38810	+	+	+	+	+	+
macropain) 26S subunit,
ATPase, 5 (PSMC5)
proteasome (prosome,	2	D78275	+	+	+	+		+
macropain) 26S subunit,
ATPase, 6 (PMSC6)
proteasome (prosome,	1	AF001212	T	+			+
macropain) 26S subunit,
non-ATPase, 11 (PSMD11)
proteasome (prosome,	2	D78151		+	+			+
macropain) 26S subunit,
non-ATPase, 2 (PSMD2)
proteasome (prosome,	1	S79862	T	+	+		+
macropain) 26S subunit,
non-ATPase, 5 (PSMD5)
proteasome (prosome,	1	D50063		+	+	+		+	high in many libraries
macropain) 26S subunit,
non-ATPase, 7 (Mov34
homolog) (PMSD7)
proteasome (prosome,	1	AB003103		+	+	+		+
macropain) 26S subunit,
on-ATPase, 12 (PMSD12)
proteasome (prosome,	3	L07633	+	+	+	+		+
macropain) activator
subunit 1 (PA28 alpha)
(PSME1)
proteasome (prosome,	2	D00762		+	+	+		+
macropain) subunit, alpha
type, 3 (PSMA3)
proteasome (prosome,	3	X61970	+	+	+	+		+
macropain) subunit, alpha
type, 5 (PSMA5)
proteasome (prosome,	3	AF054185		+	+	+	+	+
macropain) subunit, alpha
type, 7 (PSMA7)
proteasome (prosome,	1	AF022815
macropain) subunit, alpha
type, 7 (PSMA7) (low
match)
proteasome (prosome,	1	D00761	+	+	+	+	+	+
macropain) subunit, beta
type, 1 (PSMB1)
proteasome (prosome,	1	X71874	+	+		+	+	+
macropain) subunit, beta
type, 10 (PSMB10)
proteasome (prosome,	1	D29012		+	+	+		+
macropain) subunit, beta
type, 6 (PMSB6)
proteasome (prosome,	1	U17497	+	+	+	+		+
macropain) subunit, beta
type, 8 (large
multifunctional protease 7)
(PSMB8)
proteasome (prosome,	3	Z14977	+			+		+
macropain) subunit, beta
type, 9 (large
multifunctional protease 2)
(PSMB9)
proteasome (prosome,	1	D38048	+	+	+	+	+	+
macropain) subunit, beta
ype, 7 (PSMB7)
protective protein for beta-	3	M22960	+	+	+	+	+	+
galactosidase
(galactosialidosis) (PPGB)
protein A alternatively	1	U47925		+
spliced form 2 (A-2)
protein activator of the	1	AF072860		+	+	+		+	high in testis
interferon-induced protein
kinase (PACT)
protein disulfide isomerase-	2	D49489	+	+	+	+	+	+
related protein (P5)
protein	1	L25441	+	+	+
geranylgeranyltransferase
type I, beta subunit
(PGGT1B)
protein homologous to	20	M24194	+	+	+	+	+	+	high in many libraries
chicken B complex protein,
guanine nucleotide binding
(H12.3)
protein kinase A anchoring	1	AF037439		+
protein
protein kinase C substrate	2	U50317	+	+	+	+		+
80K-H (PRKCSH)
protein kinase C, beta 1	6	X06318	+	+	+	+		+
(PRKCB1)
protein kinase C, delta	1	D10495	+	+	+	+		+
(PRKCD)
protein kinase C, eta	1	M55284			+			+
(PRKCH)
protein kinase C, mu	1	X75756
(PRKCM) (non-exact 78%)
Protein kinase C-like 1	2	D26181	+	+	+	+		+
(PRKCL1)
protein kinase, AMP-	1	U42412	B, T	+	+
activated, gamma 1 non-			lymphoma
catalytic subunit (PRKAG1)
protein kinase, cAMP-	4	M18468		+	+	+	+	+
dependent, regulatory, type
I, alpha (tissue specific
extinguisher 1) (PRKAR1A)
protein kinase, DNA-	1	U47077		+	+		+	+
activated, catalytic
polypeptide (PRKDC)
protein kinase, mitogen-	1	Z11695	B	+			+
activated 1 (MAP kinase 1;
p40, p41) (PRKM1)
protein kinase, mitogen-	1	L77964		+		+	+	+
activated 6 (extracellular
signal-regulated kinase,
p97) (PRKM6)
protein kinase, mitogen-	1	U66839	+	+	+	+	+
activated, kinase 3 (MAP
kinase kinase 3) (PRKMK3)
protein phosphatase 1,	5	M63960	+	+	+	+	+	+
catalytic subunit, alpha
isoform (PPP1CA)
protein phosphatase 1,	3	Y13247		+	+	+		+
regulatory subunit 10
(PPPR10)
protein phosphatase 1,	2	Z50749	+	+	+	+	+	+
regulatory subunit 7
(PPP1R7)
protein phosphatase 2	1	X12656	+	+	+	+	+	+
(formerly 2A), catalytic
subunit, beta isoform
(PPP2CB)
protein phosphatase 2	1	L07590			+	+		+
(formerly 2A), regulatory
subunit B″ (PR 72), alpha
isoform and (PR 130), beta
isoform (PPP2R3)
protein phosphatase 2,	2	L42373	+	+	+	+		+
regulatory subunit B (B56),
alpha isoform (PPP2R5A)
protein phosphatase 2,	3	D78360		+	+	+		+
regulatory subunit B (B56),
delta isoform (PPP2R5D)
protein phosphatase 2,	1	D26445	+	+	+	+		+
regulatory subunit B (B56),
gamma isoform
(PPP2R5C)
protein phosphatase 2A	5	J02902	+	+	+	+		+
regulatory subunit alpha-
isotype (alpha-PR65)
protein phosphatase 4	2	AF097996	+	+	+	+		+
(formerly X), catalytic
subunit (PPP4C)
protein tyrosine kinase 2	4	L49207		+		+		+
beta (PTK2B)
protein tyrosine	1	X54134
phosphatase epsilon
protein tyrosine	2	L48723	+	+	+	+		+
phosphatase type IVA,
member 2 (PTP4A2)
protein tyrosine	1	M31724	+	+	+	+
phosphatase, non-receptor
type 1 (PTPN1)
protein tyrosine	1	M93425		+	+	+		+	high in testis
phosphatase, non-receptor
type 12 (PTPN12)
protein tyrosine	1	M93425
phosphatase, non-receptor
type 12 (PTPN12) (non-
exact, 70%)
protein tyrosine	2	M25393		+	+	+		+
phosphatase, non-receptor
type 2 (PTPN2)
protein tyrosine	1	M68941			+	+		+
phosphatase, non-receptor
type 4 (megakaryocyte)
(PTPN4)
protein tyrosine	7	M74903	+	+	+	+		+
phosphatase, non-receptor
type 6 (PTPN6)
protein tyrosine	1	D11327	+			+		+
phosphatase, non-receptor
type 7 (PTPN7)
protein tyrosine	1	M34668	+	+	+	+		+
phosphatase, receptor
type, alpha polypeptide
(PTPRA)
protein tyrosine	44	Y00638	+	+		+		+
phosphatase, receptor
type, c polypeptide
(PTPRC)
protein tyrosine	1	X58288		+	+	+		+
phosphatase, receptor
type, M (PTPRM)
protein tyrosine	2	U81561		+		+		+
phosphatase, receptor
type, N polypeptide 2
(PTPRN2)
protein with polyglutamine	1	U94836	+	+	+	+		+
repeat (ERPROT213-21)
protein-kinase, interferon-	1	U28424		+	+	+	+	+
inducible double stranded
RNA dependent inhibitor
(PRKRI)
protein-L-isoaspartate (D-	4	D13892		+	+
aspartate) O-
methyltransferase (PCMT1)
proteoglycan 1, secretory	7	J03223		+		+		+
granule (PRG1)
prothymosin, alpha (gene	12	M14483	+	+	+	+	+	+
sequence 28) (PTMA)
prp28, U5 snRNP 100 kd	7	AF026402	+	+	+	+		+
protein (U5-100K)
PRP4/STK/WD splicing	1	AF001687		+	+	+		+
factor (HPRP4P)
PTK7 protein tyrosine	1	U40271		+	+	+		+
kinase 7 (PTK7)
purinergic receptor P2X,	3	AF000234		+	+	+		+
ligand-gated ion channel, 4
(P2RX4)
purinergic receptor P2X,	1	Y12851	+						macrophage only
ligand-gated ion channel, 7
(P2RX7)
puromycin-sensitive	1	Y07701		+	+			+
aminopeptidase (PSA)
putative ATP(GTP)-binding	2	AJ010842		+				+
protein
putative brain nuclearly-	1	AB018308	+	+	+	+		+
targeted protein
(KIAA0765)
putative chemokine	1	D10923	+
receptor; GTP-binding
protein (HM74)
putative dienoyl-CoA	1	AF030249
isomerase (ECH1)
putative G-binding protein	1	AF065393
Putative human HLA class	1	U73477	B	+			+
II associated protein I
(PHAP1)
Putative L-type neutral	1	AB007896
amino acid transporter
(KIAA0436)
putative mitochondrial	1	AF050198
space protein 32.1
PUTATIVE MUCIN CORE	1	Q04900
PROTEIN PRECURSOR
24 (MULTI-
GLYCOSYLATED CORE
PROTEIN 24) (MGC-24)
(MUC-24)
putative nucleic acid	2	X76302	+	+	+	+		+
binding protein
putative outer	1	U58970		+	+	+		+
mitochondrial membrane
34 kDa translocase
Htom34
putative p150 (non-exact	1	U93568
88%)
putative translation	1	L26247	+	+	+	+	+	+	High in moderately
initiation factor (SUI1)									differentiated colon
									adenocarcinoma
putative tumor suppressor	1	AF061836		+	+	+		+
protein (123F2)
pyrroline 5-carboxylate	1	M77836	+	+	+	+		+
reductase
pyruvate dehydrogenase	1	D90084		+	+	+	+	+
(lipoamide) alpha 1
(PDHA1)
pyruvate dehydrogenase	2	J03576	+	+	+	+		+
(lipoamide) beta (PDHB)
Pyruvate dehydrogenase	3	Y13145		+	+
complex, lipoyl-containing
component X; E3-binding
protein (PDX1)
pyruvate kinase, muscle	11	M23725					+
(PKM2)
RAB, member of RAS	1	U18420		+	+	+		+
oncogene family-like
(RABL)
RAB1, member RAS	3	M28209		+	+	+		+
oncogene family (RAB1)
RAB11A, member RAS	2	X56740	+	+	+	+		+	high in spleen
oncogene family (RAB11A)
RAB11B, member RAS	1	D45418		+				+
oncogene family (Rab11B)
RAB27A, member RAS	3	U38654				+
oncogene family (RAB27A)
RAB5B, member RAS	1	X54871		+	+	+		+
oncogene family (RAB5B)
RAB6, member RAS	1	M28212		+				+
oncogene family (RAB6)
RAB7, member RAS	1	X93499	+	+	+	+		+
oncogene family (RAB7)
RAB7, member RAS	2	D84488		+	+	+		+
oncogene family-like 1
(RAB7L1)
RAB9, member RAS	1	U44103
oncogene family (RAB9)
RAD50 (S. cerevisiae)	2	U63139		+	+	+
homolog (RAD50)
RAD51 (S. cerevisiae)	1	AF029669		+	+	+		+
homolog C (RAD51C)
Radin blood group (RD)	2	L03411		+	+	+		+
RAE1 (RNA export 1,	3	U84720	+	+	+	+		+
S. pombe) homolog (RAE1)
ralA-binding protein	2	L42542	+	+	+	+
(RLIP76)
RAN binding protein 2-like	2	AF012086
1 (RANBP2L1)
Ran GTPase activating	3	X82260	+	+	+	+		+
protein 1 (RANGAP1)
RAN, member RAS	1	M31469
oncogene family (RAN)
(low match)
RanBP2 (Ran-binding	1	D42063
protein 2) (=U19248;
L41840 sapiens
nucleoporin (NUP358))
ransforming growth factor,	4	D50683	+	+	+	+		+
beta receptor II (70-80 kD)
(TGFBR2)
RAP1A, member of RAS	10	M22995	+	+	+	+	+	+
oncogene family (RAP1A)
RAR-related orphan	1	U16997						+
receptor C (RORC)
RAS guanyl releasing	1	Y12336	+	+
protein 2 (calcium and
DAG-regulated)
ras homolog gene family,	12	X05026	+	+	+	+	+	+	high in ovary
member A (ARHA)
ras homolog gene family,	1	X61587	+	+	+	+
member G (rho G) (ARHG)
ras homolog gene family,	2	Z35227	+	+	+			+
member H (ARHH)
ras inhibitor (RIN1)	2	M37191		+
Ras-GTPase activating	2	AF053535	+	+	+	+		+
protein SH3 domain-
binding protein 2
(KIAA0660)
Ras-GTPase-activating	3	U32519	+	+	+	+		+
protein SH3-domain-
binding protein (G3BP)
ras-related C3 botulinum	11	M29871			+			+
toxin substrate 2 (rho
family, small GTP binding
protein Rac2) (RAC2)
RAS-RELATED PROTEIN	1	P09526
RAP-1B (GTP-BINDING
PROTEIN SMG P21B)
RBQ-1	1	X85133		+	+	+
rearranged T cell receptor	1	L06891
beta variable region
(TCRB) (=X58810)
regulator of Fas-induced	1	AF057557	B				+
apoptosis (TOSO)
regulator of G protein	1	AF073920		+
signalling 6 (RGS6)
regulator of G-protein	2	AF037195	+	+	+	+
signalling 14 (RGS14)
regulator of G-protein	6	L13391	+	+	+	+		+
signalling 2, 24 kD (RGS2)
regulator of G-protein	1	O15539
signalling 5 (RGS5) (49%
aa)
regulatory factor X, 4	1	M69297			+	+
(influences HLA class II
expression) (RFX4)
regulatory factor X, 5	2	X85786	T	+	+			+
(influences HLA class II
expression (RFX5)
replication protein A1	1	M63488	+	+	+	+		+
(RPA1)
replication protein A3	1	L07493
(14 kD) (RPA3) (low match)
reproduction 8 (D8S2298E)	1	D83767		+	+	+
requiem, apoptosis	2	U94585	+	+	+	+		+
response zinc finger gene
(REQ)
requiem, apoptosis	1	U94585
response zinc finger gene
(REQ) (=AF001433) (low
match)
restin (Reed-Steinberg cell-	1	M97501	B, T	+	+
expressed intermediate
filament-associated
protein) (RSN)
retinoblastoma 1 (including	3	L11910	+	+	+	+
osteosarcoma) (RB1)
retinoblastoma binding	1	AF087481
protein 2 homolog 1
(RBBP2H1)
retinoblastoma-binding	1	S66427	+	+
protein 1 (RBBP1)
retinoblastoma-binding	5	S66431	+	+	+	+		+
protein 2 (RBBP2)
retinoblastoma-binding	1	X71810		+	+	+		+
protein 4 (RBBP4)
retinoblastoma-binding	1	X74262		+	+	+		+
protein 4 (RBBP4)
retinoblastoma-binding	1	U35143
protein 7 (RBBP7)
retinoblastoma-like 2	1	X76061		+	+	+		+
(p130) (RBL2)
retinoic acid receptor	1	AF060228		+		+	+	+
responder (tazarotene
nduced) 3 (RARRES3)
retinoic acid receptor,	1	X06538	+	+		+
alpha (RARA)
retinoic acid responsive	1	U50383		+		+		+
(NN8-4AG)
retinoid X receptor beta	2	X66424		+	+	+		+
(RXR-beta)
REV3 (yeast homolog)-like,	1	AF035537
catalytic subunit of DNA
polymerase zeta (REV3L)
Rho GDP dissociation	23	L07916	+	+	+	+	+	+
inhibitor (GDI) beta
(ARHGDIB)
Rho GTPase activating	2	X78817	+	+
protein 4 (ARHGAP4)
Rho GTPase activating	1	P98171
protein 4 (ARHGAP4) (low
match)
Rho-associated, coiled-coil	1	AB014519
containing protein kinase 2
(ROCK2)
ribonuclease 6 precursor	2	U85625	+	+	+	+	+	+
(RNASE6PL)
ribonuclease 6 precursor	1	U85625
(RNASE6PL) (low match)
ribonuclease, RNase A	1	X55988					+
family, 2 (liver, eosinophil-
derived neurotoxin)
(RNASE2)
ribonuclease/angiogenin	3	M36717	+	+	+	+		+
inhibitor (RNH)
ribonucleoside diphosphate	1	X65708
reductase M1 subunit
ribonucleotide reductase	1	P31350
M2 polypeptide (non-exact
91%)
ribophorin I (RPN1)	1	Y00281	+	+	+	+		+
ribophorin II (RPN2)	1	Y00282	+	+	+	+	+	+
ribosomal 18S rRNA	3	M10098
ribosomal 28S RNA	1	M11167
ribosomal phosphoprotein	1	D28418
P0, 5′UTR (low matchkiller cell lectin-like	1	U11276			+	+		+
receptor subfamily B,
member 1 (KLRB1)
killer cell lectin-like	1	U96846
receptor subfamily C,
member 4 (KLRC4)
kinectin 1 (kinesin receptor)	1	D13629
(KTN1)
kinesin family member 5B	2	X65873		+	+	+
(KIF5B)
kinesin-like DNA binding	1	AB017430	+	+	+	+		+
protein
Kruppel-related DNA-	1	M61869
binding protein (TF6) (low
match)
Kruppel related gene	1	M20675
(clone pHKR1RS)
Kruppel-like zinc finger	3	U51869	+	+	+	+	+	+
protein Zf9
Kruppel-like zinc finger	1	U44975		+	+		+	+
protein Zf9 (non-exact
76%)
kruppel-type zinc finger	1	AB011414.1
protein, ZK1
L apoferritin	3	X03742
lactate dehydrogenase A	3	X02152		+	+	+	+	+
(LDHA)
lactate dehydrogenase A	1	X02152
(LDHA) (non-exact, 81%)
lactate dehydrogenase B	6	X13794	+	+	+	+	+	+	high in fetal lung
(LDHB)									fibrablast
lactotransferrin (LTF)	1	U07643	+			+		+	high in bone marrow
laminin binding protein (low	1	D28372
score)
laminin receptor 1 (67 kD);	20	X15005	+	+	+	+	+	+	high in many libraries
Ribosomal protein SA
(LAMR1)
laminin receptor homolog	1	S35960
{3′ region}
laminin, gamma 1 (formerly	2	J03202	+	+	+			+
LAMB2) (LAMC1)
latent transforming growth	2	M34057		+	+	+		+
factor beta binding protein
1 (LTBP1)
LAZ3/BCL6	1	Z79581
(=Z79582; D28522/4)
LDLC	2	Z34975	+	+	+	+		+
lecithin-cholesterol	1	M17959
acyltransferase (LCAT)
(non-exact, 66%)
lectin, galactoside-binding,	1	M87842				+
soluble, 2 (galectin 2)
(LGALS2)
lectin, galactoside-binding,	1	L13210	+	+	+	+		+
soluble, 3 binding protein
(galectin 6 binding protein)
(LGALS3BP)
leucine rich repeat (in FLII)	5	AJ223075	+	+	+	+	+	+
interacting protein 1
(LRRFIP1)
leucocyte immunoglobulin-	2	AF072099				+
like receptor-5 (LIR-5)
leucocyte immunoglobulin-	7	AF025530
like receptor-6a (LIR-6)
leucocyte immunoglobulin-	2	U82275		+					only found in CNS
like receptor-7 (LIR-7)
leukemia virus receptor 1	1	L20859	+	+	+	+		+
(GLVR1)
leukocyte adhesion protein	1	M29484
p150, 95 alpha subunit
leukocyte antigen, HLA-A2	3	Y13267
leukocyte immunoglobulin-	3	AF025528		+
like receptor (MIR-10)
leukocyte tyrosine kinase	1	X60702	+						found only in blood
(LTK)
leukocyte-associated Ig-	3	AF013249				+
like receptor 1 (LIAR1)
leukotriene A4 hydrolase	6	J03459	+	+	+	+	+	+
(LTA4H)
leupaxin (LDPL)	2	AF062075	+			+		+
ligase I, DNA, ATP-	1	M36067	B, T	+	+		+	+
dependent (LIG1)
LIM and SH3 protein 1	2	X82456	+	+	+	+	+	+
(LASP1)
LIM domain kinase 2	2	AC002073	+	+	+	+		+
(LIMK2)
line-1 protein	1
Line-1 repeat mRNA with 2	1	U93566	+	+	+	+	+	+
open reading frames
Line-1 repeat with 2 open	1	M22332	+	+	+	+	+	+	high in gastric tumor
reading frames
LINE-1 REVERSE	1	P08547
TRANSCRIPTASE
HOMOLOG
lipase A, lysosomal acid,	4	X76488	+	+	+	+		+
cholesterol esterase
(Wolman disease) (LIPA)
lipase, hormone-sensitive	1	L11706	+	+				+
(LIPE)
LMP7	1	L11045
Lon protease-like protein	2	X74215	+	+	+	+		+
(LONP)
low density lipoprotein-	2	AF058414					+		only in liver
related protein 1 (alpha-2-
macroglobulin receptor)
(LRP1)
low density lipoprotein-	1	M63959		+	+		+	+
related protein-associated
protein 1 (alpha-2-
macroglobulin receptor-
associated protein 1)
(LRPAP1)
low density lipoprotein-	1	M63959
related protein-associated
protein 1 (alpha-2-
macroglobulin receptor-
associated protein 1)
(LRPAP1) (non-exact,
75%)
low-affinity Fc-gamma	1	L08107
receptor IIA
LPS-induced TNF-alpha	9	AF010312	+	+	+	+	+	+
factor (PIG7)
Lst-1	1	U00921	+	+	+	+		+
L-type amino acid	1	AF104032
transporter subunit LAT1
lung resistance-related	1	X79882	+	+	+	+		+
Protein (LRP)
Lymphocyte antigen 75	1	AF011333	B
(LY75)
lymphocyte antigen 9 (LY9)	2	L42621
lymphocyte antigen HLA-	2	L42345
B*4402 and HLA-B*5101
lymphocyte cytosolic	42	J02923
protein 1 (L-plastin) (LCP1)
lymphocyte cytosolic	4	U20158	T
protein 2 (SH2 domain-			lymphoma,
containing leukocyte			T activated
protein of 76 kD) (LCP2)
lymphocyte glycoprotein	2	X04391	+		+
T1/Leu-1
lymphocyte-specific protein	16	M33552	+	+	+	+		+
1 (LSP1)
lymphocyte-specific protein	7	M36881		+				+
tyrosine kinase (LCK)
lymphoid phosphatase	1	AF001847
LyP1
lymphoid-restricted	4	U10485	+		+	+
membrane protein (LRMP)
lymphoid-specific SP100	1	U36500						+
homolog (LYSP100-A)
lymphoma proprotein	2	U33849	+	+	+	+		+
convertase (LPC)
LYSOSOMAL	1	P10619
PROTECTIVE PROTEIN
PRECURSOR
(CATHEPSIN A)
(CARBOXYPEPTIDASE C)
lysosomal-associated	1	J04182	+	+	+	+	+	+
membrane protein 1
(LAMP1)
Lysosomal-associated	1	J04183		+	+	+	+	+
membrane protein 2
(LAMP2)
lysozyme (renal	39	M19045	+	+	+	+		+
amyloidosis) (LYZ)
lysyl-tRNA synthetase	2	D32053	+	+	+	+		+
(KARS)
M phase phosphoprotein	1	X98494
10 (U3 small nucleolar
ribonucleoprotein) (MPP-
10)
M1-type and M2-type	2	X56494
pyruvate kinase
m6A methyltransferase	7	AF014837	+	+		+
(MT-A70)
mab-21 (C. elegans)-like 1	1	U38810		+	+	+		+
(MAB21L1)
MacMarcks	1	X70326	+	+	+	+	+	+
macrophage-associated	1	Z22968		+	+	+		+
antigen (MM130)
MADS box transcription	1	U49020		+	+	+		+
enhancer factor 2,
polypeptide A (myocyte
enhancer factor 2A)
(MEF2A)
MADS box transcription	1	L08895		+	+	+		+
enhancer factor 2,
polypeptide C (myocyte
enhancer factor 2C)
(MEF2C)
major cytoplasmic tRNA-	1	X17516
Val(lAC) (=M33940)
major histocompatibility	1	M95531
complex class I beta chain
(HLA-B)
major histocompatibility	41	Z93949	+	+	+	+		+	high in villous
complex, class I, A (HLA-A)									adenoma
major histocompatibility	1	Z72422
complex, class I, A (HLA-A)
(low match)
major histocompatibility	82	M24097	+	+	+	+	+	+
complex, class I, C (HAL-
C)
major histocompatibility	77	M20022	+	+	+	+		+
complex, class I, E (HLA-E)
major histocompatibility	2	U15085	+	+	+	+		+
complex, class II, DM
BETA (HLA-DMB)
major histocompatibility	10	M57466	+	+	+	+		+
complex, class II, DP beta
1 (HLA-DPB1)
major histocompatibility	9	V00522	+	+	+	+		+
complex, class II, DR beta
1 (HLA-DRB1)
Major histocompatibility	2	M24070		+	+		+	+
complex, class II, Y box-
binding protein I; DNA-
binding protein B (YB1)
malate dehydrogenase 1,	1	D55654	+	+	+	+	+	+
NAD (soluble) (mdh1)
malate dehydrogenase 1,	3	D55654		+	+		+	+
NAD (soluble) (MDH1)
malonyl-CoA	2	AF097832
decarboxylase precursor
maltase-glucoamylase	1	AF016833				+
(mg)
manic fringe (Drosophila)	1	U94352	+	+	+	+		+
homolog (MFNG)
mannose phosphate	1	X76057		+	+	+		+
isomerase (MPI)
mannose phosphate	2	X76057		+	+	+		+
isomerase (mpi)
mannose-6-phosphate	3	X56253		+	+		+	+
receptor (cation
dependent) (M6PR)
mannose-P-dolichol	1	AF038961		+	+	+		+
utilitzation defect 1
(MPDU1)
mannosidase, alpha B,	1	U60885		+		+	+	+
lysosomal (MANB)
mannosyl (alpha-1,3-)-	1	M55621	+	+	+	+	+	+
glycoprotein beta-1,2-N-
acetylglucosaminyltransfer
ase (MGAT1)
map 4q35 repeat region	1	AF064849
MAP kinase-interacting	2	AB000409		+	+	+	+	+
serine/threonine kinase 1
(MKNK1)
MAP/ERK kinase kinase 3	5	U78876		+
(MEKK3)
MAP/ERK kinase kinase 5	1	D84476		+	+		+
(MEKK5)
MAP/microtubule affinity-	4	M80359		+	+			+
regulating kinase 3
(MARK3)
Marenostrin protein	1	Y14441
MASL1	1	AB016816
MAX dimerization protein	3	L06895						+
(MAD)
MaxiK potassium channel	1	AF035046
beta subunit
MBP-2 for MHC binding	1	X65644		+	+	+		+
Protein 2
Meis (mouse) homolog 3	1	U68385		+	+	+		+
(MEIS3)
melanoma-associated	1	M12154
antigen p97
(melanotransferrin)
membrane cofactor protein	4	X59405		+	+	+		+
(CD46, trophoblast-
lymphocyte cross-reactive
antigen) (MCP)
membrane component,	4	D14696		+	+	+	+	+
chromosome 17, surface
marker 2 (ovarian
carcinoma antigen CA125)
(M17S2)
membrane metallo-	2	J03779	B		+	+	+	+
endopeptidase (neutral
endopeptidase,
enkephalinase, CALLA,
CD10) (MME)
membrane protein,	2	M64925		+	+	+	+	+
palmitoylated 1 (55 kD)
(MPP1)
meningioma expressed	1	U94780				+
antigen (MGEA)
meningioma-expressed	1	U73682	+	+		+	+
antigen 11 (MEA11)
Menkes Disease (ATP7A)	1	L06133		+
putative Cu++-transporting
P-type ATPase
metallothionein 2A (MT2A)	1	V00594		+	+	+	+	+
metaxin 1 (MTX1)	1	U46920		+		+		+
methionine	2	X68836	+	+	+	+		+
adenosyltransferase II,
alpha (MAT2A)
methyl-CpG binding	1	Y10746
domain protein 1 (MBD1)
(non-exact 59% aa)
methylene tetrahydrofolate	2	X16396	+	+	+	+		+
dehydrogenase (NAD+
dependent),
methenyltetrahydrofolate
cyclohydrolase (MTHFD2)
methylenetetrahydrofolate	1	J04031		+	+	+	+	+
dehydrogenase (NADP+
dependent),
methenyltetrahydrofolate
cyclohydrolase,
formyltetrahydrofolate
synthetase (MTHFD1)
methyltransferase, putative	2	AJ224442
MHC antigen (HLA-B)	1	U14943
(=L42024)
MHC class 1 region	2	AF055066
MHC class I antigen (HLA-	1	U70863
A2)
MHC class I antigen (HLA-	1	U19736
A33)
MHC class I antigen (HLA-	1	U38975
C)
MHC class I antigen	1	U52813
B*5801 (HLA-B)
MHC class I antigen HLA-A	2	AF015930
(HLA-A)
MHC class I antigen HLA-A	1	U36687
(HLA-A-2402 allele)
MHC class I antigen HLA-	2	X13112
A11K
MHC class I antigen HLA-B	1	U67331
(B*0801 variant)
(=AF028596)
MHC class I antigen HLA-B	1	U67330
(B*0801 variant) (=U88254)
MHC class I antigen HLA-B	1	AF017328
(B*48 allele)
MHC class I antigen HLA-B	1	AF014770
(HLA-B*1502 allele)
MHC class I antigen HLA-B	1	U58643
(HLA-B*40MD)
MHC class I antigen HLA-B	1	AF028596
(HLA-B*4103 allele)
MHC class I antigen HLA-B	1	AF035648
gene (HLA-B*4402 variant
allele)
MHC class I antigen HLA-B	1	U52175
GN00110-B*3910
MHC class I antigen HLA-	1	D83030
Cw*04011
MHC class I antigen	1	U56434
R69772 HLA-A (A*0302)
MHC class I antigen	1	U58469
SHCHA (HLA-B*4403
variant)
MHC class I	1	U06697
histocompatibility antigen
(HLA-B) (clone C21/14)
MHC class I HLA B71	2	L07950
MHC class I HLA-A	1	Flp
(Aw33.1)
MHC class I HLA-B	1	U18660
MHC class I HLA-B (HLA-	1	U18661
B-07ZEL allele) (=X86704)
MHC class I HLA-B (HLA-	1	U28759
B-08NR allele)
MHC class I HLA-B*3512	1	L76094
MHC class I HLA-B41	3	U17572
variant (=U17572)
MHC class I HLA-B44.2	1	M24038
chain
MHC class I HLA-B51-	1	L41086
cd3.3
MHC class I HLA-C allele	2	Z33459
MHC class I HLA-Cw*0304	1	D64150
(=M84172; M99389)
MHC class I HLA-Cw*0803	3	Z15144
MHC class I HLA-Cw6	1	M28206
MHC class I HLA-J antigen	1	L56139
MHC class I lymphocyte	1	M19670
antigen A2 (A2.1) variant
DK1
MHC class I mic-B antigen	1	X91625
MHC class I polypeptide-	1	L14848				+
related sequence A (MICA)
MHC class I protein HLA-C	1	U61274
heavy chain (C*0701new
allele) (=AF017331)
MHC class II DNA	1	L18885
Sequence (clone A37G7-
1C11)
MHC class II DQ-alpha	1	M16995	+		+	+		+
associated with DRw6,
DQw1 protein
MHC class II DQ-beta	2	M17564		+		+		+
associated with DR2,
DQw1 protein
MHC class II HAL-DQ-	1	M33842
LTR5 (DQ, w8) DNA
fragment, long terminal
repeat region
MHC class II hla-dr alpha-	1	J00195
chain
(=J00197; M60334; K011171;
J00194; M60333; X00274)
MHC class II HLA-DRB1	1	AF007883
MHC class II HLA-DRw11-	1	M21966
beta-I chain (DRw11.3)
MHC class II lymphocyte	1	M23907
antigen (DPw4-beta-1)
MHC CLASS II	1	P33076
TRANSACTIVATOR CIITA
(non-exact 57%)
MHC HLA-E2.1 (=X87679)	1	M32507
MHC HLA-E2.1 (alpha-2	1	M32507
domain) (low match)
Mi-2 autoantigen 240 kDa	1	U08379
protein (non-exact 84%)
microsomal stress 70	1	U04735
protein ATPase core (stch)
microtubule-associated	1	U19727	+	+	+	+		+
protein 4 (MAP4)
microtubule-associated	1	X73882
protein 7 (MAP7)
mineralocorticoid receptor	2	M16801		+		+		+
(aldosterone receptor)
(MLR)
minichromosome	1	X62153		+	+	+		+
maintenance deficient
(S. cerevisiae)
3 (MCM31)
minichromosome	1	AB011144		+	+	+		+
maintenance deficient
(S. cerevisiae)
3-associated
protein (MCM3AP)
minichromosome	2	X74795	+	+	+	+	+	+
maintenance deficient
(S. cerevisiae)
5 (cell division
cycle 46) (MCM5)
mitochondiral cytochrome b	1	AF042517
(CYTB)
mitochondrial 16S rRNA	11	Z70759
mitochondrial ATP	2	X59066
synthase (F1-ATPase)
alpha subunit
mitochondrial ATP	1	X69907
synthase c subunit (P1
form)
mitochondrial cytochrome b	6	AF042508
(CYTB)
mitochondrial cytochrome b	1	AB006202
small subunit of complex II
mitochondrial	1	P00395
CYTOCHROME C
OXIDASE POLYPEPTIDE I
mitochondrial	1	P00403
CYTOCHROME C
OXIDASE POLYPEPTIDE
II
mitochondrial cytochrome	2	P00403
C oxidase subunit II
mitochondrial cytochrome	5	U12691
oxidase subunit II (COII)
(=U12692 Hsa4
mitochondrion cytochrome
oxidase subunit II)
mitochondrial DNA loop	1	X89763
attachment sequences
(clone LAS34)
mitochondrial DNA	1	U94703		+
polymerase accessory
subunit precursor (MtPolB)
nuclear gene encoding
mitochondrial protein,
mitochondrial DNA,	1	X93334
complete genome
mitochondrial genes for	8	V00710
several tRNAs (Phe, Val,
Leu) and 12S and 16S
ribosomal RNAs.
mitochondrial genes for	3	V00660
tRNA (Phe) and 12S rRNA
(fragment)
mitochondrial inner	1	AF106622
membrane preprotein
translocase Tim17a
mitochondrial isolate Afr7	1	AF042503
cytochrome b(CYTB)
mitochondrial loop	1	X89843
attachment sequence
(clone LAS88)
mitochondrial NADH	14	AF014893
dehydrogenase subunit 2
(ND2)
mitochondrial translational	1	L34600		+	+	+		+
initiation factor 2 (MTIF2)
mitochondrion cytochrome b	1	U09500
mitogen inducible gene	1	Z24725		+	+	+		+
mig-2
mitogen inducible gene	1	Z24725
mig-2 (non-exact, 71%)
mitogen-activated protein	2	U43784		+	+	+		+
kinase-activated protein
kinase 3 (MAPKAPK3)
MLN51	2	X80199		+	+	+	+	+
MLN64 (=D38255 CAB1)	1	X80198	+	+	+	+
moesin (MSN)	14	M69066	+	+	+	+		+
monocytic leukaemia zinc	2	U47742		+	+	+		+
finger protein (MOZ)
MOP1 ( )	2	U29165
motor protein (Hs.78504)	2	D21094	+	+	+	+		+
mouse double minute 2,	1	U39736			+	+
human homolog of; p53-
binding protein (MDM2)
M-phase phosphoprotein 6	1	X98263		+	+	+		+
(MPP-6)
M-phase phosphoprotein,	1	X98260
mpp11
MPS1	1	L20314
Mr 110,000 antigen	2	D64154		+		+	+	+
MRC OX-2, V-like region	1	X05324
(=M17227)
mu-adaptin-related protein-	1	Y08387
2; mu subunit of AP-4 (MU-
ARP2)
multifunctional polypeptide	1	X53793	+	+	+	+		+
similar to SAICAR
synthetase and AIR
carboxylase (ADE2H1)
murine leukemia viral (bmi-	1	L13689		+		+		+
1) oncogene homolog
(BMI1)
mutant (Daudi) beta2-	44	X07621
microglobulin
mutated in colorectal	1	M62397		+	+			+
cancers (MCC)
myeloid cell leukemia	9	L08246	+	+	+	+	+	+
sequence 1 (BCL2-related)
(MCL1)
myeloid cell nuclear	11	M81750	+					+
differentiation antigeN
(MNDA)
myeloid differentiation	4	U70451		+	+	+		+
primary response gene
(88) (MYD88)
myeloid leukemia factor 2	3	U57342		+		+		+
(MLF2)
myeloid/lymphoid or mixed-	8	U89867		+	+	+		+
lineage leukemia (trithorax
(Drosophila) homolog);
translocated to, 7 (MLLT7)
MYH9 (cellular myosin	1	M81105
heavy chain)
myomesin (M-protein) 2	1	X69089
(165 kD) (MYOM2)
myosin IE (MYO1E)	11	X98411		+		+
myosin light chain kinase	1	U48959	+		+	+		+
(MLCK)
myosin phosphatase,	2	D87930		+	+	+		+
target subunit 1 (MYPT1)
myosin regulatory light	2	D50372
chain (=U26162)
myosin VIIa (low match 71)	1	U55208
myosin, heavy polypeptide	3	M81105	+	+	+	+		+
9, non-muscle (MYH9)
myosin, light polypeptide,	6	X54304	+	+	+	+	+	+
regulatory, non-sarcomeric
(20 kD) (MLCB)
myosin-I beta	1	X98507	+	+	+	+		+
myristoylated alanine-rich	1	D10522		+	+
protein kinase C substrate
(MARCKS, 80K-L) (MACS)
myxovirus (influenza)	1	M30817	+	+	+	+		+
resistance 1, homolog of
murine (interferon-inducible
protein p78) (MX1)
myxovirus (influenza)	3	M30818			+
resistance 2, homolog of
murine (MX2)
N-acetylgalactosaminidase,	2	M62783		+	+		+	+
alpha-(NAGA)
N-acetylglucosamine	1	L03532		+	+	+		+
receptor 1 (thyroid)
(NAGR1)
NACP/alpha-synuclein	2	U46896
N-acylaminoacyl-peptide	1	D38441		+	+		+	+
hydrolase (APEH)
N-acylsphingosine	11	U47674	+	+	+	+		+
amidohydrolase (acid
ceramidase) (ASAH)
NAD+-specific isocitrate	1	U49283	+	+	+	+	+	+
dehydrogenase beta
subunit precursor
(encoding mitochondrial
protein)
NADH dehydrogenase	1	U53468.1	+	+	+	+	+	+
(ubiquinone) 1 alpha
subcomplex, 5 (13 KD, B13)
(NDUFA5)
NADH dehydrogenase	1	AF047181		+	+	+	+	+
(ubiquinone) 1 beta
subcomplex, 5 (16 KD,
SGDH) (NDUFB5)
NADH dehydrogenase	1	AF050640		+	+	+	+	+
(ubiquinone) Fe-S protein 2
(49 KD) (NADH-coenzyme
Q eductase) (NDUFS2)
NADH dehydrogenase	1	M22538			+	+	+	+
(ubiquinone) flavoprotein 2
(24 KD) (NDUFV2)
NADH: ubiquinone	2	AF053070	+	+	+	+	+	+
dehydrogenase 51 KDa
subunit (NDUFV1)
NADH-CYTOCHROME B5	1	P00387
REDUCTASE (B5R)
(50% aa)
NADH-UBIQUINONE	1	P03886
OXIDOREDUCTASE
CHAIN 1
Nardilysin (N-arginine	2	U64898	+	+	+	+		+
dibasic convertase)
(NRD1)
nascent-polypeptide-	5	X80909		+	+		+	+
associated complex alpha
polypeptide (NACA)
natural killer cell group 7	8	S69115				+		+
sequence (NKG7)
natural killer cell transcript	19	M32011	+
4 (NK4)
natural killer-associated	1	U30274	+						blood only
transcript 3 (NKAT3)
natural killer-associated	1	AF022045	+						blood only
transcript 5 (NKAT5)
natural killer-tumor	1	L04288	B		+		+	+
recognition sequence
(NKTR)
N-deacetylase/N-	2	AF042084	+	+		+		+
sulfotransferase (heparan
glucosaminyl) 2 (NDST2)
Ndr protein kinase	3	Z35102		+
Nedd-4-like ubiquitin-	1	U96113
Protein ligase WWP1
nel (chicken)-like 2	3	D83018		+	+
(NELL2)
N-ethylmaleimide-sensitive	1	U39412		+			+
factor attachment protein,
alpha (NAPA)
N-ethylmaleimide-sensitive	1	U78107		+	+	+
factor attachment protein,
gamma (NAPG)
neural precursor cell	3	X92544	+	+	+	+		+	high in testis
expressed,
developmentally down-
regulated 5 (NEDD5)
neural precursor cell	1	D23662	+	+	+	+	+	+
expressed,
developmentally down-
regulated 8 (NEDD8)
neuregulin 1 (NRG1)	1	U02330		+		+	+
neuroblastoma RAS viral	4	AB020692	+	+	+	+		+
(v-ras) oncogene homolog
(NRAS)
Neuroblastoma RAS viral	1	X68286
(v-ras) oncogene homolog
(NRAS) (low match)
Neurofibromin 2 (bilateral	1	S73853		+				+
acoustic neuroma) (NF2)
neuronal apoptosis	2	U19251	+	+	+			+
inhibitory protein (NAIP)
neuronal cell adhesion	1	AB002341		+	+	+		+
molecule (NRCAM)
neuropathy target esterase	1	AJ004832		+	+	+		+
(NTE)
neuropeptide Y3 receptor,	1	D28433
5′UTR (low score)
neurotrophic tyrosine	14	X03541	+	+	+	+	+	+
kinase, receptor, type 1
(NTRK1)
neutrophil cytosolic factor 4	2	U50720
(40 KD)
NG31	1	AF129756
NGAL (=X83006)	1	X99133
nibrin (NBS)	1	AF051334
NIK	1	AB014587		+	+	+		+
Ninjurin 1; nerve injury-	1	U72661		+	+	+		+
induced protein-1
nitrilase 1 (NIT1)	1	AF069987
(=AF069984)
NKG2-D (low match) (non-	1	X54870
exact, 58%)
Nmi	1	U32849
N-myristoyltransferase 1	1	AF043324		+	+	+	+	+
(NMT1)
No arches-like (zebrafish)	1	U79569		+	+	+		+
zinc finger protein (NAR)
non-histone chromosome	1	D50420	+	+	+	+	+	+
protein 2 (S. cerevisiae)-
like 1 (NHP2L1)
non-muscle (fibroblast)	1
tropomyosin
non-muscle alpha-actinin	1	U48734
non-muscle myosin alkali	3	M22918	+	+	+	+	+	+	High in fetal adrenal
light chain (Hs. 77385)									gland and BPH
									stroma
non-neuronal enolase (EC	1	X16289
4.2.1.11)
non-receptor tyrosine	1	M33689
phosphatase 1
normal keratinocyte	3	X53778	+	+	+	+	+	+	high in many libraries
substraction library mRNA,
clone H22a
notch group protein (N)	3	M99437
novel protein	1	X99961
novel T-cell activation	1	X94232		+	+	+		+
protein
N-ras protein NRU	1	A60196
N-sulfoglucosamine	1	U60111		+				+
sulfohydrolase
(sulfamidase) (SGSH)
nsulin induced gene 1	1	U96876	+	+	+	+	+	+
(INSIG1)
ntegrin, alpha 4 (antigen	3	L12002	+			+
CD49D, alpha 4 subunit of
VLA-4 receptor) (ITGA14)
nterferon, gamma-inducible	1	M63838	+	+	+	+		+
protein 16 (IFI16)
nterleukin 1, beta (IL1RB)	1	M15330
nuclear antigen H731-like	2	U83908		+	+	+		+
protein
nuclear antigen Sp100	4	U36501	+			+	+	+
(SP100)
Nuclear antigen Sp100	1	P23497
(SP100) (85% aa)
Nuclear antigen Sp100	1	P23497
(SP100) (89% aa)
nuclear autoantigenic	1	M97856	+		+
sperm protein (histone-
binding) (NASP)
nuclear corepressor KAP-1	1	U78773
(KAP-1) (=U95040; X97548
TIF1beta zinc finger
protein)
Nuclear domain 10 protein	4	U22897	+	+	+	+	+	+
(NDP52)
Nuclear factor (erythroid-	1	S74017		+	+	+	+	+
derived 2)-like 2 (NFE2L2)
Nuclear factor of kappa	2	M58603		+	+		+	+
light polypeptide gene
enhancer in B-cells 1
(p105) (NFKB1)
nuclear factor of kappa	3	M69043		+	+	+		+
light polypeptide gene
enhancer in B-cells
inhibitor, alpha (NFKBIA)
nuclear factor related to	1	U08191		+	+	+		+
kappa B binding protein
(NFRKB)
nuclear mitotic apparatus	3	Z11583	+	+	+	+	+	+
protein 1 (NUMA1)
nuclear receptor	1	X97674
coactivator 2 (GRIP1)
nuclear receptor	2	AF010227	+	+	+			+
coactivator 3 (AIB3)
nuclear receptor	22	X77548		+	+	+	+	+
coactivator 4 (ELE1)
nuclear receptor interacting	1	X84373		+		+		+
protein 1 (NRIP1)
nuclear respiratory factor 1	1	U02683	B	+	+
(NRF1)
nuclear RNA helicase,	4	U90426	+	+	+	+		+
DECD variant of DEAD box
family (DDXL)
nuclear transcription factor	1	X59711	B
Y, alpha (NFYA)
nuclear transcription factor,	3	U15306		+	+		+
X-box binding 1 (NFX1)
nuclear transport factor 2	1	X07315	+	+	+	+		+
(placental protein 15)
(PP15)
nucleobindin (=M96824)	1	U31336
nucleobindin 1 (NUCB1)	2	M96824	+	+	+	+		+
nucleolar phosphoprotein	1	Z34289		+	+
p130 (P130)
nucleolar protein (KKE/D	1	Y12065	+	+	+	+		+
repeat) (NOP56)
nucleolar protein (MSP58)	1	AF015308
nucleolar protein 1 (120 KD)	1	M32110	+	+
(NOL1)
nucleolar protein p40	1	U86602	+	+	+	+		+
nucleolin (NCL)	2	M60858	+	+	+	+		+
nucleophosmin (nucleolar	14	M28699	+	+	+	+		+
phosphoprotein B23,
numatrin) (NPM1)
nucleophosmin-retinoic	1	U41742
acid receptor alpha fusion
protein NPM-RAR long
form
nucleoporin (NUP358)	2	L41840
(=D42063 RanBP2 (Ran-
binding protein 2))
nucleoporin 153 KD	1	Z25535
(NUP153)
nucleoporin 98 KD (NUP98)	1	U41815
nucleosome assembly	1	D28430
protein
nucleosome assembly	1	M86667		+	+	+		+
protein 1-like 1 (NAP1L1)
nucleosome assembly	2	U77456	+	+	+	+		+
protein 1-like 4 (NAP1L4)
nucleosome assembly	1	D28430
protein, 5′UTR
olfactory receptor (OR7-	1	U86281
141)
OLFACTORY RECEPTOR-	1	P34982
LIKE PROTEIN HGMP07E
(OR17-4) (non-exact 65%)
oligodendrocyte myelin	7	L05367		+
glycoprotein (OMG)
O-linked N-	1	U77413	+	+		+	+	+
acetylglucosamine
(GlcNAc) transferase
(UDP-N-
acetylglucosamine: polypep
tide-N-acetylglucosaminyl
transferase) (OGT)
oncofetal trophoblast	1	A53531
glycoprotein 5T4 precursor
(non-exact 55%)
Oncogene TIM (TIM) (non-	1	U02082
exact 84%)
ORF (Hs.77868)	1	M68864	+	+	+	+	+	+
ORF1; MER37; putative	1	U49973
transposase similar to pogo
element Length = 454
origin recognition complex,	2	U27459				+
subunit 2 (yeast homolog)-
like (ORC2L)
origin recognition complex,	1	AF022108
subunit 4 (yeast homolog)-
like (ORC4L) (low match)
ornithine aminotransferase	2	M23204		+	+	+
(gyrate atrophy) (OAT)
ornithine decarboxylase	1	M20372
(ODC)
ornithine decarboxylase	11	D78361	+	+	+	+	+	+	High in pancreas,
antizyme, ORF 1 and ORF 2									and activated T cells
orphan receptor	2	U07132	+	+	+	+		+
(Hs. 100221)
OS-9 precurosor	6	AB002806	+	+	+	+	+	+
osteonectin (=X82259 BM-	1	D28381
40)
ovel centrosomal protein	1	AB008515		+	+	+		+
RanBPM (RANBPM)
over-expressed breast	1	L34839
tumor protein
oviductal glycoprotein 1,	1	U09550			+	+	+
120 kD (OVGP1)
oxidase (cytochrome c)	1	X80695		+	+	+	+	+
assembly 1-like (OXAIL)
oxoglutarate	4	D10523	T	+	+		+	+
dehydrogenase (lipoamide)
(OGDH)
oxysterol binding protein	1	M86917	+	+			+
(OSBP)
OZF	1	X70394		+	+	+		+
OZF (non-exact zinc finger)	1	X70394
p21/Cdc42/Rac1-activated	2	U51120	+	+		+
kinase 1 (yeast Ste20-
related) (PAK1)
P35-related protein (=S80990	1	D63392
ficolin)
p40	1	U93569
p40phox (=U50720)	1	X77094
P47 LBC oncogene	4	U03634
p53-induced protein	1	AF010315	+	+	+	+
(PIG11)
p54nrb (low match)	1	Y11287
p62 nucleoporin	1	X58521
p63 mRNA for	1	X69910	+	+	+	+		+
transmembrane protein
PAC clone DJ0701O16	1	Q07108
from 7q33-q36 (non-exact
54%)
palmitoyl-protein	10	U44772		+	+	+		+
thioesterase (ceroid-
lipofuscinosis, neuronal 1,
infantile; Haltia-Santavuori
disease) (PPT)
papillary renal cell	1	X99720	+	+	+	+	+	+
carcinoma (translocation-
associated) (PRCC)
PAR protein	1	AF115850		+		+
partial EST (clone c-1gh04)	1	Z43627
PAX3/forkhead	1	U02368
transcription factor gene
fusion
paxillin (PXN)	4	D86862		+	+	+		+
PBK1 protein	2	AJ007398	+	+	+	+		+
PBS-EST (nz92e01.s1	1	AA732534
NCI_CGAP_GCB1 clone
IMAGE: 1302936) (low
score)
PDZ domain protein	1	AJ224747	+			+		+
(Drosophila inaD-like)
(INALD)
PEBP2aC Runt domain	1	Z38108
encoding gene (=Z35728)
peptidase D (PEPD)	1	J04605
peptidylprolyl isomerase A	3	Y00052		+	+	+	+	+	high in many libraries
(cyclophilin A) (PPIA)
peptidylprolyl isomerase D	2	L11667	T	+	+		+	+
(cyclophilin D)(PPID)
peptidylprolyl isomerase E	1	AF042386		+	+		+	+
(cyclophilin E) (PPIE)
PERB11.1 (=U56942 MHC	1	U69630
class I chain-related protein
A)
perforin 1 (preforming	14	M28393
protein) (PRF1)
peroxisomal acyl-CoA	2	X86032
thioesterase (PTE1)
Peroxisomal acyl-	1	X71440		+	+	+	+	+
coenzyme A oxidase
peroxisomal farnesylated	1	X75535		+	+	+	+	+
protein (PXF)
phorbol-12-myristate-13-	1	D90070	B, W
acetate-induced protein
(PMAIP1)
phosphate carrier	1	X77337
(mitochondrial gene?)
Phosphate carrier,	3	X60036	+	+	+	+		+
mitochondrial (PHC)
phosphate	1	L28957	T		+		+
cytidylyltransferase 1,
choline, alpha isoform
(PCYT1A)
PHOSPHATIDATE	1	Q92903
CYTIDYLYLTRANSFERAS
E (CDP-DIGLYCERIDE)
phosphatidylinositol 3-	2	U57843
kinase delta catalytic
subunit
phosphatidylinositol 4-	3	AB005910	+	+	+	+		+
kinase, catalytic, beta
polypeptide (PIK4CB)
phosphatidylinositol glycan,	1	L19783		+	+	+	+	+
class H (PIGH)
phosphatidylinositol	2	D30037
transfer protein (PI-TPbeta)
phosphatidylinositol	2	X98654	B, T	+
transfer protein,			lymphoma
membrane-associated
(PITPNM)
phosphatidylinositol	1	X98654
transfer protein,
membrane-associated
(PITPNM) (non-exact 64%)
phosphatidylinositol-4-	1	U14957			+		+
phosphate 5-kinase, type
II, alpha (PIP5K2A)
phosphatidylinositol-4-	1	U85245		+	+	+		+
phosphate 5-kinase, type
II, beta (PIP5K2B)
phosphodiesterase 7A	1	L12052	B, W	+	+		+
(PDE7A)
phosphodiesterase IB	1	U56976		ON-
(PDES1B)				LY
phosphoglucomutase 1	2	M83088		+	+	+		+
(PGM1)
phosphogluconate	1	U30255			+
dehydrogenase (PGD)
phosphoglycerate kinase 1	12	V00572
(PGK1)
phosphoglycerate mutase	3	J04173	+	+	+	+	+	+
1 (brain) (PGAM1)
phosphoglycerate mutase	1	M55673		+	+			+
2 (muscle) (PGAM2)
phosphoinositide-3-kinase,	1	Z29090		+	+	+
catalytic, alpha polypeptide
(PIK3CA)
phosphoinositide-3-kinase,	4	U86453		+	+	+		+
catalytic, delta polypeptide
(PIK3CD)
phosphoinositide-3-kinase,	1	X83368
catalytic, gamma
polypeptide (PIK3CG)
phospholipase C	1	X14034
phospholipase C, delta 1	2	U09117		+	+	+		+
(PLCD1)
phospholipase C, gamma 1	1	M34667	+	+	+	+		+
(formerly subtype 148)
(PLCG1)
phospholipid scramblase	1	AF008445
phosphoribosyl	1	D61391		+	+			+
pyrophosphate synthetase-
associated protein 1
(PRPSAP1)
phosphoribosylglycinamide	3	X54199		+	+	+	+	+
formyltransferase,
phosphoribosylglycinamide
synthetase,
phosphoribosylaminoimida
zole synthetase (GART)
phosphorylase kinase,	3	D38616		+	+	+	+	+
alpha 2 (liver), glycogen
storage disease IX
(PHKA2)
phosphorylase, glycogen;	1	U47025	+	+	+			+
brain (PYGB)
phosphorylase, glycogen;	1	U47025
brain (PYGB) (low match,
non-exact, 75%)
phosphorylase, glycogen;	1	Y15233		+	+	+		+
liver (Hers disease,
lycogen storage disease
type VI) (PYGL)
phosphorylation regulatory	2
protein HP-10
phosphotidylinositol	1	D30036	+	+	+	+		+
transfer protein (PITPN)
pigment epithelium-derived	1	U29953	+	+	+	+	+	+
factor (PEDF)
pim-1 oncogene (PIM1)	1	M24779	+	+	+			+
pinin, desmosome	1	U77718	B,
associated protein (PNN)			monocyte, T
			lymphoma
placenta (Diff33)	5	U49188		+	+	+		+
placenta (Diff33) (non-	1	U49188
exact, 69%)
placenta (Diff48)	18	U49187	+
placenta (Diff48) (low	1	U49187
match)
placenta(Diff48) (low	1	U49187
match)
plasminogen activator,	1	X74039		+		+		+
urokinase receptor
(PLAUR)
platelet factor 4 (PF4)	1	M25897			+			+
platelet/endothelial cell	8	M37780		+	+	+	+	+
adhesion molecule (CD31
ntigen) (PECAM1)
platelet-activating factor	4	U89386		+	+	+
acetylhydrolase 2 (40 kD)
(PAFAH2)
platelet-activating factor	1	U72342	+	+	+	+	+	+
acetylhydrolase, isoform lb,
alpha subunit (45 kD)
(PAFAH1B1)
platelet-activating factor	1	D10202		+				+
receptor (PTAFR)
pleckstrin (PLEK)	10	X07743			+	+		+
pleckstrin (PLEK) (low	1	X07743
match)
pleckstrin homology, Sec7	4	M85169	+	+		+		+
and coiled/coil domains
1(cytohesin 1) (PSCD1)
pleckstrin homology, Sec7	4	L06633	+			+
and coiled/coil domains,
binding protein (PSCDBP)
pM5 protein	1	X57398	+	+	+	+		+
PMP69	2	Y14322
poly (ADP-ribose)	1	X56140
polymerase (NAD (+) ADP-
ribosyltransferase)
(=X16674)
poly(A) polymerase (PAP)	1	X76770	+	+	+	+		+
poly(A)-binding protein-like	19	Y00345	+	+	+	+	+	+
1 (PABPL1)
poly(rC)-binding protein 1	3	X78137	+	+	+	+	+	+
(PCBP1)
polyadenylate binding	1	U75686
protein
polycystic kidney disease 1	5	U24498
(autosomal dominant)
(PKD1)
polymerase (DNA	1	D29013		+			+	+
directed), beta (POLB)
polymerase (DNA	6	D84103
directed), gamma (POLG)
polymerase (RNA) II (DNA	1	X63564	+	+	+	+	+	+
directed) polypeptide A
(220 kD) (POLR2A)
polymyositis/scleroderma	1	L01457	+	+	+	+	+	+
autoantigen 2 (100 kD)
(PMSCL2)
polypyrimidine tract binding	1	X65372	+	+	+	+	+	+
protein (heterogeneous
nuclear ribonucleoprotein I)
(PTB)
positive regulator of	3	U13021			+
programmed cell death
ICH-1L (lch-1)
postmeiotic segregation	1	M16514	+	+	+	+		+
increased 2-like 12
(PMS2L12)
postmeiotic segregation	1	U38964	+	+	+	+		+
increased 2-like 8
(PMS2L8)
potassium inwardly-	1	D87291				+		+
rectifying channel,
subfamily J, member 15
(KCNJ15)
potassium voltage-gated	1	AF051426		+	+	+		+
channel, KQT-like
subfamily, member 1
(KCNQ1)
POU domain, class 2,	1	Z49194				+
associating factor 1
(POU2AF1)
POU domain, class 2,	2	X13403		+		+
transcription factor 1
(POU2F1)
PPAR binding protein	1	Y13467	+	+	+	+		+
(PPARBP)
PPAR gamma2	1	D83233
pre-B-cell colony-	8	U02020
enhancing factor (PBEF)
prefoldin 1 (PFDN1)	1	Y17392	+	+	+	+	+	+
prefoldin 5 (PRFLD5)	3	D89667	B	+	+		+
prefoldin subunit 3	1	Y17394
(=U96759 von Hippel-
Lindau binding protein
(VBP-1))
pregnancy-associated	1	U28727		+		+			high in placenta
plasma protein A (PAPPA)
pre-mRNA splicing factor	1	U08815	+	+	+	+		+
SF3a (60 kD), similar to
S. cerevisiae
PRP9
(spliceosome-associated
protein 61) (SF3A60)
pre-mRNA splicing factor	1	U08815
SF3a (60 kD), similar
to S. cerevisiae
PRP9
(spliceosome-associated
protein 61) (SF3A60) (low
score)
pre-mRNA splicing factor	2	D28423
SRp20, 5′UTR
preprotein translocase	3	X97544	+	+	+	+		+
(TIM17)
prion protein	1	X82545
prion protein (p27-30)	1	M13899		+	+	+		+
(Creutzfeld-Jakob disease,
Gerstmann-Strausler-
Scheinker syndrome, fatal
familial insomnia) (PRNP)
pristanoyl-CoA oxidase	1	Y11411
(low match)
pristanoyl-CoA oxidase	1	Y11411
(low score)
procollagen-lysine, 2-	1	M98252		+	+	+		+
oxoglutarate 5-dioxygenase
(lysine hydroxylase, Ehlers-
Danlos syndrome type VI)
(PLOD)
procollagen-proline, 2-	1	M24486	+	+	+	+	+	+
oxoglutarate 4-dioxygenase
(proline 4-hydroxylase),
alpha polypeptide 1
(P4HA1)
procollagen-proline, 2-	4	X05130	+	+	+	+	+	+
oxoglutarate 4-dioxygenase
(proline 4-hydroxylase),
beta polypeptide (protein
disulfide isomerase; thyroid
hormone binding protein
p55) (P4HB)
profilin 1 (PFN1)	1	J03191	+	+	+	+	+	+
progesterone receptor-	2	U28918		+
associated p48 protein
(P48)
prohibitin (PHB)	1	S85655		+	+	+	+	+
proliferating cell nuclear	3	J04718	+	+	+	+		+
antigen (PCNA)
proliferation-associated	4	L19184	+	+	+	+	+	+
gene A (natural iller-
enhancing factor A)
(PAGA)
proline-rich protein BstNI	1	S62936
subfamily 2 (PRB2) (non-
exact, 43% aa)
proline-serine-threonine	1	U94778
phosphatase interacting
protein 1 (PSTPIP1)
prolyl endopeptidase	2	X74496		+		+		+
(PREP)
prolylcarboxypeptidase	5	L13977		+	+	+	+	+
(angiotensinase C) (PRCP)
promyelocytic leukemia	1	M80185	+	+	+	+		+
(PML)
properdin P factor,	4	X57748	+
complement (PFC)
pro-platelet basic protein	1	M54995			+	+		+
(includes platelet basic
protein, beta-
thromboglobulin,
connective
tissue-activating peptide III,
neutrophil-activating
peptide-2) (PPBP)
pro-platelet basic protein	7	M54995	+		+		+
(includes platelet basic
protein, beta-
thromboglobulin,
connective tissue-activating
peptide III, neutrophil-
activating peptide-2)
(PPBP)
proprotein convertase	4	U40623
subtilisin/kexin type 7
(PCSK7)
prosaposin (variant	89	D00422	+	+	+	+	+	+
Gaucher disease and
variant metachromatic
leukodystrophy) (PSAP)
prostaglandin-	1	U63846	B	+			+	+
endoperoxide synthase 1
(prostaglandin G/H
synthase and
cyclooxygenase) (PTGS1)
prostaglandin-	2	L15326
endoperoxide synthase 2
(prostaglandin G/H
synthase and
cyclooxygenase) (PTGS2)
prostaglandin-	1	D64068
endoperoxide synthase-1
(=L08404; U84208) (all
promoters)
prostate carcinoma tumor	2	L78132
antigen (pcta-1)
protease inhibitor 1 (anti-	17	K02212		+	+	+	+	+	high in many libraries
elastase), alpha-1-
antitrypsin (PI)
protease inhibitor 2 (anti-	1	M93056				+		+
elastase),
monocyte/neutrophil
(ELANH2) (low match)
proteasome (prosome,	3	L02426	B	+	+			+
macropain) 26S subunit,
ATPase, 1 (PSMC1)
proteasome (prosome,	1	M34079	+	+	+	+		+
macropain) 26S subunit,
ATPase, 3 (PSMC3)
proteasome (prosome,	2	AF020736
macropain) 26S subunit,
ATPase, 4 (PSMC4)
proteasome (prosome,	5	L38810	+	+	+	+	+	+
macropain) 26S subunit,
ATPase, 5 (PSMC5)
proteasome (prosome,	2	D78275	+	+	+	+		+
macropain) 26S subunit,
ATPase, 6 (PMSC6)
proteasome (prosome,	1	AF001212	T	+			+
macropain) 26S subunit,
non-ATPase, 11 (PSMD11)
proteasome (prosome,	2	D78151		+	+			+
macropain) 26S subunit,
non-ATPase, 2 (PSMD2)
proteasome (prosome,	1	S79862	T	+	+		+
macropain) 26S subunit,
non-ATPase, 5 (PSMD5)
proteasome (prosome,	1	D50063		+	+	+		+	high in many libraries
macropain) 26S subunit,
non-ATPase, 7 (Mov34
homolog) (PMSD7)
proteasome (prosome,	1	AB003103		+	+	+		+
macropain) 26S subunit,
on-ATPase, 12 (PMSD12)
proteasome (prosome,	3	L07633	+	+	+	+		+
macropain) activator
subunit 1 (PA28 alpha)
(PSME1)
proteasome (prosome,	2	D00762		+	+	+		+
macropain) subunit, alpha
type, 3 (PSMA3)
proteasome (prosome,	3	X61970	+	+	+	+		+
macropain) subunit, alpha
type, 5 (PSMA5)
proteasome (prosome,	3	AF054185		+	+	+	+	+
macropain) subunit, alpha
type, 7 (PSMA7)
proteasome (prosome,	1	AF022815
macropain) subunit, alpha
type, 7 (PSMA7) (low
match)
proteasome (prosome,	1	D00761	+	+	+	+	+	+
macropain) subunit, beta
type, 1 (PSMB1)
proteasome (prosome,	1	X71874	+	+		+	+	+
macropain) subunit, beta
type, 10 (PSMB10)
proteasome (prosome,	1	D29012		+	+	+		+
macropain) subunit, beta
type, 6 (PMSB6)
proteasome (prosome,	1	U17497	+	+	+	+		+
macropain) subunit, beta
type, 8 (large
multifunctional protease 7)
(PSMB8)
proteasome (prosome,	3	Z14977	+			+		+
macropain) subunit, beta
type, 9 (large
multifunctional protease 2)
(PSMB9)
proteasome (prosome,	1	D38048	+	+	+	+	+	+
macropain) subunit, beta
ype, 7 (PSMB7)
protective protein for beta-	3	M22960	+	+	+	+	+	+
galactosidase
(galactosialidosis) (PPGB)
protein A alternatively	1	U47925		+
spliced form 2 (A-2)
protein activator of the	1	AF072860		+	+	+		+	high in testis
interferon-induced protein
kinase (PACT)
protein disulfide isomerase-	2	D49489	+	+	+	+	+	+
related protein (P5)
protein	1	L25441	+	+	+
geranylgeranyltransferase
type I, beta subunit
(PGGT1B)
protein homologous to	20	M24194	+	+	+	+	+	+	high in many libraries
chicken B complex protein,
guanine nucleotide binding
(H12.3)
protein kinase A anchoring	1	AF037439		+
protein
protein kinase C substrate	2	U50317	+	+	+	+		+
80K-H (PRKCSH)
protein kinase C, beta 1	6	X06318	+	+	+	+		+
(PRKCB1)
protein kinase C, delta	1	D10495	+	+	+	+		+
(PRKCD)
protein kinase C, eta	1	M55284			+			+
(PRKCH)
protein kinase C, mu	1	X75756
(PRKCM) (non-exact 78%)
Protein kinase C-like 1	2	D26181	+	+	+	+		+
(PRKCL1)
protein kinase, AMP-	1	U42412	B, T	+	+
activated, gamma 1 non-			lymphoma
catalytic subunit (PRKAG1)
protein kinase, cAMP-	4	M18468		+	+	+	+	+
dependent, regulatory, type
I, alpha (tissue specific
extinguisher 1) (PRKAR1A)
protein kinase, DNA-	1	U47077		+	+		+	+
activated, catalytic
polypeptide (PRKDC)
protein kinase, mitogen-	1	Z11695	B	+			+
activated 1 (MAP kinase 1;
p40, p41) (PRKM1)
protein kinase, mitogen-	1	L77964		+		+	+	+
activated 6 (extracellular
signal-regulated kinase,
p97) (PRKM6)
protein kinase, mitogen-	1	U66839	+	+	+	+	+
activated, kinase 3 (MAP
kinase kinase 3) (PRKMK3)
protein phosphatase 1,	5	M63960	+	+	+	+	+	+
catalytic subunit, alpha
isoform (PPP1CA)
protein phosphatase 1,	3	Y13247		+	+	+		+
regulatory subunit 10
(PPPR10)
protein phosphatase 1,	2	Z50749	+	+	+	+	+	+
regulatory subunit 7
(PPP1R7)
protein phosphatase 2	1	X12656	+	+	+	+	+	+
(formerly 2A), catalytic
subunit, beta isoform
(PPP2CB)
protein phosphatase 2	1	L07590			+	+		+
(formerly 2A), regulatory
subunit B″ (PR 72), alpha
isoform and (PR 130), beta
isoform (PPP2R3)
protein phosphatase 2,	2	L42373	+	+	+	+		+
regulatory subunit B (B56),
alpha isoform (PPP2R5A)
protein phosphatase 2,	3	D78360		+	+	+		+
regulatory subunit B (B56),
delta isoform (PPP2R5D)
protein phosphatase 2,	1	D26445	+	+	+	+		+
regulatory subunit B (B56),
gamma isoform
(PPP2R5C)
protein phosphatase 2A	5	J02902	+	+	+	+		+
regulatory subunit alpha-
isotype (alpha-PR65)
protein phosphatase 4	2	AF097996	+	+	+	+		+
(formerly X), catalytic
subunit (PPP4C)
protein tyrosine kinase 2	4	L49207		+		+		+
beta (PTK2B)
protein tyrosine	1	X54134
phosphatase epsilon
protein tyrosine	2	L48723	+	+	+	+		+
phosphatase type IVA,
member 2 (PTP4A2)
protein tyrosine	1	M31724	+	+	+	+
phosphatase, non-receptor
type 1 (PTPN1)
protein tyrosine	1	M93425		+	+	+		+	high in testis
phosphatase, non-receptor
type 12 (PTPN12)
protein tyrosine	1	M93425
phosphatase, non-receptor
type 12 (PTPN12) (non-
exact, 70%)
protein tyrosine	2	M25393		+	+	+		+
phosphatase, non-receptor
type 2 (PTPN2)
protein tyrosine	1	M68941			+	+		+
phosphatase, non-receptor
type 4 (megakaryocyte)
(PTPN4)
protein tyrosine	7	M74903	+	+	+	+		+
phosphatase, non-receptor
type 6 (PTPN6)
protein tyrosine	1	D11327	+			+		+
phosphatase, non-receptor
type 7 (PTPN7)
protein tyrosine	1	M34668	+	+	+	+		+
phosphatase, receptor
type, alpha polypeptide
(PTPRA)
protein tyrosine	44	Y00638	+	+		+		+
phosphatase, receptor
type, c polypeptide
(PTPRC)
protein tyrosine	1	X58288		+	+	+		+
phosphatase, receptor
type, M (PTPRM)
protein tyrosine	2	U81561		+		+		+
phosphatase, receptor
type, N polypeptide 2
(PTPRN2)
protein with polyglutamine	1	U94836	+	+	+	+		+
repeat (ERPROT213-21)
protein-kinase, interferon-	1	U28424		+	+	+	+	+
inducible double stranded
RNA dependent inhibitor
(PRKRI)
protein-L-isoaspartate (D-	4	D13892		+	+
aspartate) O-
methyltransferase (PCMT1)
proteoglycan 1, secretory	7	J03223		+		+		+
granule (PRG1)
prothymosin, alpha (gene	12	M14483	+	+	+	+	+	+
sequence 28) (PTMA)
prp28, U5 snRNP 100 kd	7	AF026402	+	+	+	+		+
protein (U5-100K)
PRP4/STK/WD splicing	1	AF001687		+	+	+		+
factor (HPRP4P)
PTK7 protein tyrosine	1	U40271		+	+	+		+
kinase 7 (PTK7)
purinergic receptor P2X,	3	AF000234		+	+	+		+
ligand-gated ion channel, 4
(P2RX4)
purinergic receptor P2X,	1	Y12851	+						macrophage only
ligand-gated ion channel, 7
(P2RX7)
puromycin-sensitive	1	Y07701		+	+			+
aminopeptidase (PSA)
putative ATP(GTP)-binding	2	AJ010842		+				+
protein
putative brain nuclearly-	1	AB018308	+	+	+	+		+
targeted protein
(KIAA0765)
putative chemokine	1	D10923	+
receptor; GTP-binding
protein (HM74)
putative dienoyl-CoA	1	AF030249
isomerase (ECH1)
putative G-binding protein	1	AF065393
Putative human HLA class	1	U73477	B	+			+
II associated protein I
(PHAP1)
Putative L-type neutral	1	AB007896
amino acid transporter
(KIAA0436)
putative mitochondrial	1	AF050198
space protein 32.1
PUTATIVE MUCIN CORE	1	Q04900
PROTEIN PRECURSOR
24 (MULTI-
GLYCOSYLATED CORE
PROTEIN 24) (MGC-24)
(MUC-24)
putative nucleic acid	2	X76302	+	+	+	+		+
binding protein
putative outer	1	U58970		+	+	+		+
mitochondrial membrane
34 kDa translocase
Htom34
putative p150 (non-exact	1	U93568
88%)
putative translation	1	L26247	+	+	+	+	+	+	High in moderately
initiation factor (SUI1)									differentiated colon
									adenocarcinoma
putative tumor suppressor	1	AF061836		+	+	+		+
protein (123F2)
pyrroline 5-carboxylate	1	M77836	+	+	+	+		+
reductase
pyruvate dehydrogenase	1	D90084		+	+	+	+	+
(lipoamide) alpha 1
(PDHA1)
pyruvate dehydrogenase	2	J03576	+	+	+	+		+
(lipoamide) beta (PDHB)
Pyruvate dehydrogenase	3	Y13145		+	+
complex, lipoyl-containing
component X; E3-binding
protein (PDX1)
pyruvate kinase, muscle	11	M23725					+
(PKM2)
RAB, member of RAS	1	U18420		+	+	+		+
oncogene family-like
(RABL)
RAB1, member RAS	3	M28209		+	+	+		+
oncogene family (RAB1)
RAB11A, member RAS	2	X56740	+	+	+	+		+	high in spleen
oncogene family (RAB11A)
RAB11B, member RAS	1	D45418		+				+
oncogene family (Rab11B)
RAB27A, member RAS	3	U38654				+
oncogene family (RAB27A)
RAB5B, member RAS	1	X54871		+	+	+		+
oncogene family (RAB5B)
RAB6, member RAS	1	M28212		+				+
oncogene family (RAB6)
RAB7, member RAS	1	X93499	+	+	+	+		+
oncogene family (RAB7)
RAB7, member RAS	2	D84488		+	+	+		+
oncogene family-like 1
(RAB7L1)
RAB9, member RAS	1	U44103
oncogene family (RAB9)
RAD50 (S. cerevisiae)	2	U63139		+	+	+
homolog (RAD50)
RAD51 (S. cerevisiae)	1	AF029669		+	+	+		+
homolog C (RAD51C)
Radin blood group (RD)	2	L03411		+	+	+		+
RAE1 (RNA export 1,	3	U84720	+	+	+	+		+
S. pombe) homolog (RAE1)
ralA-binding protein	2	L42542	+	+	+	+
(RLIP76)
RAN binding protein 2-like	2	AF012086
1 (RANBP2L1)
Ran GTPase activating	3	X82260	+	+	+	+		+
protein 1 (RANGAP1)
RAN, member RAS	1	M31469
oncogene family (RAN)
(low match)
RanBP2 (Ran-binding	1	D42063
protein 2) (=U19248;
L41840 sapiens
nucleoporin (NUP358))
ransforming growth factor,	4	D50683	+	+	+	+		+
beta receptor II (70-80 kD)
(TGFBR2)
RAP1A, member of RAS	10	M22995	+	+	+	+	+	+
oncogene family (RAP1A)
RAR-related orphan	1	U16997						+
receptor C (RORC)
RAS guanyl releasing	1	Y12336	+	+
protein 2 (calcium and
DAG-regulated)
ras homolog gene family,	12	X05026	+	+	+	+	+	+	high in ovary
member A (ARHA)
ras homolog gene family,	1	X61587	+	+	+	+
member G (rho G) (ARHG)
ras homolog gene family,	2	Z35227	+	+	+			+
member H (ARHH)
ras inhibitor (RIN1)	2	M37191		+
Ras-GTPase activating	2	AF053535	+	+	+	+		+
protein SH3 domain-
binding protein 2
(KIAA0660)
Ras-GTPase-activating	3	U32519	+	+	+	+		+
protein SH3-domain-
binding protein (G3BP)
ras-related C3 botulinum	11	M29871			+			+
toxin substrate 2 (rho
family, small GTP binding
protein Rac2) (RAC2)
RAS-RELATED PROTEIN	1	P09526
RAP-1B (GTP-BINDING
PROTEIN SMG P21B)
RBQ-1	1	X85133		+	+	+
rearranged T cell receptor	1	L06891
beta variable region
(TCRB) (=X58810)
regulator of Fas-induced	1	AF057557	B				+
apoptosis (TOSO)
regulator of G protein	1	AF073920		+
signalling 6 (RGS6)
regulator of G-protein	2	AF037195	+	+	+	+
signalling 14 (RGS14)
regulator of G-protein	6	L13391	+	+	+	+		+
signalling 2, 24 kD (RGS2)
regulator of G-protein	1	O15539
signalling 5 (RGS5) (49%
aa)
regulatory factor X, 4	1	M69297			+	+
(influences HLA class II
expression) (RFX4)
regulatory factor X, 5	2	X85786	T	+	+			+
(influences HLA class II
expression (RFX5)
replication protein A1	1	M63488	+	+	+	+		+
(RPA1)
replication protein A3	1	L07493
(14 kD) (RPA3) (low match)
reproduction 8 (D8S2298E)	1	D83767		+	+	+
requiem, apoptosis	2	U94585	+	+	+	+		+
response zinc finger gene
(REQ)
requiem, apoptosis	1	U94585
response zinc finger gene
(REQ) (=AF001433) (low
match)
restin (Reed-Steinberg cell-	1	M97501	B, T	+	+
expressed intermediate
filament-associated
protein) (RSN)
retinoblastoma 1 (including	3	L11910	+	+	+	+
osteosarcoma) (RB1)
retinoblastoma binding	1	AF087481
protein 2 homolog 1
(RBBP2H1)
retinoblastoma-binding	1	S66427	+	+
protein 1 (RBBP1)
retinoblastoma-binding	5	S66431	+	+	+	+		+
protein 2 (RBBP2)
retinoblastoma-binding	1	X71810		+	+	+		+
protein 4 (RBBP4)
retinoblastoma-binding	1	X74262		+	+	+		+
protein 4 (RBBP4)
retinoblastoma-binding	1	U35143
protein 7 (RBBP7)
retinoblastoma-like 2	1	X76061		+	+	+		+
(p130) (RBL2)
retinoic acid receptor	1	AF060228		+		+	+	+
responder (tazarotene
nduced) 3 (RARRES3)
retinoic acid receptor,	1	X06538	+	+		+
alpha (RARA)
retinoic acid responsive	1	U50383		+		+		+
(NN8-4AG)
retinoid X receptor beta	2	X66424		+	+	+		+
(RXR-beta)
REV3 (yeast homolog)-like,	1	AF035537
catalytic subunit of DNA
polymerase zeta (REV3L)
Rho GDP dissociation	23	L07916	+	+	+	+	+	+
inhibitor (GDI) beta
(ARHGDIB)
Rho GTPase activating	2	X78817	+	+
protein 4 (ARHGAP4)
Rho GTPase activating	1	P98171
protein 4 (ARHGAP4) (low
match)
Rho-associated, coiled-coil	1	AB014519
containing protein kinase 2
(ROCK2)
ribonuclease 6 precursor	2	U85625	+	+	+	+	+	+
(RNASE6PL)
ribonuclease 6 precursor	1	U85625
(RNASE6PL) (low match)
ribonuclease, RNase A	1	X55988					+
family, 2 (liver, eosinophil-
derived neurotoxin)
(RNASE2)
ribonuclease/angiogenin	3	M36717	+	+	+	+		+
inhibitor (RNH)
ribonucleoside diphosphate	1	X65708
reductase M1 subunit
ribonucleotide reductase	1	P31350
M2 polypeptide (non-exact
91%)
ribophorin I (RPN1)	1	Y00281	+	+	+	+		+
ribophorin II (RPN2)	1	Y00282	+	+	+	+	+	+
ribosomal 18S rRNA	3	M10098
ribosomal 28S RNA	1	M11167
ribosomal phosphoprotein	1	D28418
P0, 5′UTR (low match)
Ribosomal protein	1
ribosomal protein L10	30	L25899	+	+	+	+	+	+	high in many libraries
(RPL 10)
RIBOSOMAL PROTEIN	2	P53025
L10A (CSA-19)
ribosomal protein L11	4	X79234	+	+	+	+	+	+	Alveolar
(RPL11)									rhabdomyosarcoma
ribosomal protein L12	2	L06505	+	+	+	+	+	+
(RPL19)
ribosomal protein L13	1	P26373	+	+	+	+	+	+	high in many libraries
(PRL13)
ribosomal protein L14	4	D87735	+	+	+	+	+	+	high in many libraries
(RPL14)
ribosomal protein L17	4	X53777	+						blood only
(RPL17)
ribosomal protein L18	10	L11566	+	+	+	+		+
(RPL18)
ribosomal protein L18a	5	L05093		+	+	+	+	+	High in fetal adrenal
(RPL18A)									gland and skin
ribosomal protein L18a	2	X80821				+
homologue
ribosomal protein L19	15	X63527	+	+	+	+	+	+
(RPL19)
ribosomal protein L21	6	U14967	+	+	+	+	+	+
(RPL21)
ribosomal protein L22	3	D17652	+	+	+	+		+
(RPL22)
ribosomal protein L23	2	X55954	+	+	+	+	+	+	high in many libraries
(RPL23)
ribosomal protein L23a	5	U37230	+	+	+	+	+	+	high in many libraries
(RPL23A)
ribosomal protein L26	8	X69392	+	+	+	+	+	+
(RPL26)
ribosomal protein L27	6	L05094	+	+	+	+		+
(RPL27)
ribosomal protein L27a	10	U14968	+	+	+	+	+	+
(RPL27A)
ribosomal protein L28	6	U14969	+	+	+	+		+
(RPL28)
ribosomal protein L29	6	U10248	+	+	+	+	+	+
(RPL29)
ribosomal protein L3	81		+	+	+	+	+	+	high in many libraries
(RPL3)
ribosomal protein L3	81	X06323
homologue
ribosomal protein L30	6	X79238	+	+	+	+	+	+	high in lymphoma
(RPL30)
ribosomal protein L30	1	X79238
(RPL30) (low score)
ribosomal protein L31	10	X15940	+	+	+	+	+	+	High in alveolar
(RPL31)									rhabdomyosarcoma
ribosomal protein L32	3	X03342	+	+	+	+	+	+
(RPL32)
ribosomal protein L33-like	1	AF047440		+	+	+		+
(RPL33L)
ribosomal protein L34	5	L38941		+	+	+	+	+
(RPL34)
ribosomal protein L34	1	L38941
(RPL34) (low match)
ribosomal protein L37	5	D23661	+	+	+	+	+	+	high in barstead
(RPL37)									prostate
ribosomal protein L37a	4	X66699	+	+	+	+	+	+	high in many libraries
ribosomal protein L38	1	Z26876	+	+	+	+	+	+	high in many libraries
(PRL38)
ribosomal protein L4	27	D23660	+	+	+	+	+	+	high in many libraries
(RPL4)
ribosomal protein L41	4	AF026844	+	+	+	+	+	+	high in many libraries
(RPL41)
ribosomal protein L5	14	U14966	+	+	+	+	+	+	High in alveolar
(RPL5)									rhabdomyosarcoma
ribosomal protein 5	1	U14966
(RPL5) (low match)
ribosomal protein L6	7	X69391	+	+	+	+	+	+	high in many libraries
(RPL6)
ribosomal protein L7	14	X52967	+	+	+	+	+	+	high in conorm
RPL7
ribosomal protein L7a	15	M36072	+	+	+	+	+	+	High in uterus, and
(RPL7A)									seminoma
ribosomal protein L8	5	Z28407	+	+	+	+	+	+	high in ovary
(RPL8)
ribosomal protein L9	10	U09953		+	+	+	+	+
(RPL9)
ribosomal protein S10	5	U14972	+	+	+	+	+	+	high in many libraries
(RPS10)
ribosomal protein S11	4	X06617	+	+	+	+	+	+	high in many libraries
(RPS11)
ribosomal protein S11	1	AB007152
(RPS11) (low match)
ribosomal protein S12	3	X53505	+	+	+	+	+	+	high in many libraries
(RPS12)
ribosomal protein S13	2	L01124		+	+	+	+	+
(RPS13)
ribosomal protein S14	12	M13934	+	+	+	+	+	+
(RPS14)
ribosomal protein S15	2	M32405	+	+	+	+	+	+
(RPS15)
ribosomal protein S16	3	M60854	+	+	+	+	+	+	High in prostate
(RPS16)									invasive tumor
ribosomal protein S17	2	M13932	+	+	+	+	+	+	high in many libraries
(RPS17)
ribosomal protein S18	8	X69150
ribosomal protein S19	7	M81757	+	+	+	+	+	+	high in many libraries
(RPS19)
ribosomal protein S2	4	X17206	+	+	+	+	+	+	high in many libraries
(RPS2)
RIBOSOMAL PROTEIN S2	2	P15880
(RPS4)
ribosomal protein S20	7	L06498	+	+	+	+	+	+	high in many libraries
(RPS20)
ribosomal protein S21	3	L04483	+	+	+	+	+	+	high in CD34+/CD38−
(RPS21)									hematopoietic cells
									and skin tumor
ribosomal protein S23	3	D14530		+	+	+		+
(RPS23)
ribosomal protein S24	7	M31520	+	+	+	+	+	+	high in uterus
(RPS24)
ribosomal protein S25	3	M64716	+	+	+	+	+	+	high in barstead
(RPS25)									prostate
ribosomal protein S26	2	X69654		+	+	+	+	+
(RPS26)
ribosomal protein S27	5	U57847	+	+	+	+	+	+
((metallopanstimulin 1)
(RPS27)
ribosomal protein S28	3	U58682	+	+	+	+		+
(RPS28)
ribosomal protein S29	2	U14973	+	+	+	+	+	+
(RPS29)
ribosomal protein S3	9	X55715	+	+	+	+	+	+	high in many libraries
(RPS3)
ribosomal protein S3	1	U14990
(RPS3) (low match)
ribosomal protein S3A	21	Z83334		+	+	+	+	+	high in many libraries
(RPS3A)
ribosomal protein S3A	1	M77234
(RPS3A) (low score)
ribosomal protein S4, X-	9	M58458	+	+	+	+		+	high in ovary and
linked (RPS4X)									Synovial sarcoma
ribosomal protein S4, Y-	2	M58459	+	+	+	+	+	+
linked (RPS4Y)
ribosomal protein S5	4	U14970	+	+	+	+	+	+	high in lymphoma
(RPS5)
RIBOSOMAL PROTEIN S6	1	P10660
(PHOSPHOPROTEIN
NP33)
ribosomal protein S6	22	M20020	+	+	+	+	+	+
(RPS6)
ribosomal protein S6	1	M77232
(RPS6) (non-exact 86%)
ribosomal protein S6	3	L07597	+	+	+	+		+
kinase, 90 kD, polypeptide
1 (RPS6KA1)
ribosomal protein S6	1	X85106
kinase, 90 kD, polypeptide
2 (RPS6KA2)
ribosomal protein S7	4	Z25749		+	+	+	+	+
(RPS7)
ribosomal protein S8	6	X67247		+	+	+	+	+
(RPS8)
ribosomal protein S9	8	U14971							colon tumor
(RPS9)
ribosomal protein, large, P0	18	M17885	T		+			+
(RPLP0)
ribosomal protein, large, P1	12	M17886	T	+	+		+
(RPLP1)
ribosomal RNA 18S	11	X03205
(=M10098; K03432)
(=polyadenylating
sequence)
ribosomal RNA 28S	2	M11167
ribosomal RNA, 16S	1	U25123
ring finger protein (non-	1	AJ001019
exact 58%)
ring finger protein 3 (RNF3)	1	AJ001019
ring finger protein 4 (RNF4)	3	AB000468		+	+	+		+
ring zinc-finger protein	3	U41315		+	+	+		+
(ZNF127-Xp)
RNA (guanine-7-)	1	AB007858		+	+	+		+
methyltransferase (RNMT)
RNA binding motif protein 5	4	U23946	+	+	+	+		+
(RBM5)
RNA binding motif, single	1	D28483		+		+		+
stranded interacting protein
2 (RBMS2)
RNA helicase (putative),	1	X98743	+	+	+	+		+
(Myc-regulated DEAD box
protein) (MRD8)
RNA helicase-related	1	AF083255		+	+	+		+
protein
RNA pol II largest subunit	2	X74872
RNA polymerase I subunit	1	AF008442		+	+			+
(RPA40)
RTVP-1 protein	2	X91911	+	+	+	+		+
S100 calcium-binding	2	M81457			+		+	+
protein A10 (annexin II
ligand, calpactin I, light
polypeptide (p11))
(S100A10)
S100 calcium-binding	1	X80201		+	+	+		+
protein A11 (calgizzarin)
(S100A11)
S100 calcium-binding	3	M80563	B		+		+
protein A4 (calcium protein,
calvasculin, metastasin,
murine placental
homolog)(S100A4)
S100 calcium-binding	7	M21005			+	+		+	high in bone marrow
protein A8 (calgranulin A)
(S100A8)
S100 calcium-binding	14	X06233			+	+			high in invasive
protein A9 (calgranulin B)									larynx squamous cell
(S100A9)									carcinoma
S164 gene	1	AF109907
S-adenosylmethionine	3	M88003	+	+	+	+		+
decarboxylase 1 (AMD1)
SB classII	5	M27487	+	+	+	+		+
histocompatibility antigen
alpha-chain
SC35-interacting protein 1	5	AF030234	+	+	+	+	+	+
(SRRP129)
scaffold attachment factor	1	U72355	+	+	+	+		+
B (SAFB)
scaffold attachment factor	1	U72355
B (SAFB) (non-exact 78%)
scRNA molecule,	1	L13713
transcribed from Alu repeat
SEC14 (S. cerevisiae)-like	4	D67029		+	+	+		+
(SEC14L)
SEC23-like protein B	2	X97065	+	+	+	+		+
(SEC23B)
SEC63 (SEC63)	1	AF100141		+	+			+
secreted protein, acidic,	7	M25746		+	+	+	+	+	high in bone marrow
cysteine-rich (osteonectin)									stroma
(SPARC)
secretory carrier	1	AF038966		+		+
membrane protein 1
(SCAMP1)
secretory carrier	1	AF005038	+	+	+	+	+	+
membrane protein 2
(SCAMP2)
secretory carrier	1	AF005039
membrane protein 3
(SCAMP3)
secretory granule	1	M33649
proteoglycan core (clones
lambda-PG[6,7,8])
selectin L (lymphocyte	43	X17519	+			+		+
adhesion molecule 1)
(SELL)
selectin P ligand (SELPLG)	13	U02297	+	+
sema domain,	2	U60800		+		+		+
immunoglobulin domain
(Ig), transmembrane
domain (TM) and short
cytoplasmic domain,
(semaphorin) 4D
(SEMA4D)
Ser/Arg-related nuclear	4	AF048977		+	+	+	+	+
matrix protein (plenty of
prolines 101-like)
(SRM160)
serine palmitoyltransferase	1	Y08685		+	+	+		+
subunit I (SPTI)
serine palmitoyltransferase,	1	AB011098	+	+	+	+		+
subunit II (LCB2)
serine protease	1	J02907
serine protease inhibitor,	1	U78095	+	+	+	+		+
Kunitz type, 2 (SPINT2)
serine/threonine kinase 10	1	AB015718	+	+	+	+		+
(STK10)
serine/threonine kinase 19	1	L26260	+	+	+	+
(STK19)
serine/threonine kinase 4	1	U18297		+				+
(STK4)
serine/threonine protein	1	X66358		+	+	+		+
kinase KKIALRE
(KKIALRE)
serine/threonine protein-	1	Y10256		+	+	+
kinase (NIK)
SERINE/THREONINE-	1	P37023
PROTEIN KINASE
RECEPTOR R3
PRECURSOR (SKR3)
serologically defined colon	2	AF039694
cancer antigen 16 (NY-CO-
16)
serologically defined colon	1	AF039698	B, T	+	+		+
cancer antigen 33
(SDCCAG33)
serologically defined colon	1	AF039698
cancer antigen 33
(SDCCAG33) (low score)
serologically defined colon	1	AF039698
cancer antigen 33
(SDCCAG33) (low score)
serum deprivation	1	AF085481.1
response
(phosphatidylserine-binding
protein) (SDPR) (=S67386)
serum/glucocorticoid	2	Y10032	+	+	+	+		+
regulated kinase (SGK)
SET domain, bifurcated 1	2	D31891	+	+	+			+
(SETDB1)
SH2 domain protein 1A,	1	AF073019	T					+
Duncan's disease
lymphoproliferative
syndrome) (SH2D1A)
SH3 binding protein (SAB)	2	AB005047	+	+	+	+		+
SH3 domain protein 1B	4	U61167	+			+		+
(SH3D1B)
SH3BGR PROTEIN (=21-	1	P55822
GLUTAMIC ACID-RICH
PROTEIN; 21-GARP) (non-
exact 82% aa)
SH3-binding domain	1	AF042081	+	+	+	+		+
glutamic acid-rich protein
like (SH3BGRL)
SH3-domain GRB2-like 1	1	U65999	+	+	+	+		+
(SH3GL1)
SHC (Src homology 2	2	X68148		+	+	+		+
domain-containing)
transforming protein 1
(SHC1)
siah binding protein 1	2	U51586		+	+	+		+
(SiahBP1)
siah binding protein 1	1	U51586
(SiahBP1) (non-exact,
69%)
Sialomucin CD164	9	D14043
(CD164)
sialophorin (gpL115,	2	J04536
leukosialin, CD43) (SNP)
sialyltransferase (STHM)	1	U14550			+	+		+
sialyltransferase 1 (beta-	2	X17247	+	+	+	+	+	+
galactoside alpha-2,6-
sialytransferase) (SIAT1)
sialyltransferase 4A (beta-	1	AF059321	B	+	+		+	+
galactosidase alpha-2,3-
sialytransferase) (SIAT4A)
sialyltransferase 8 (alpha-	1	L41680		+
2,8-polysialytransferase) D
(SIAT8D)
signal peptidase 25 kDa	1	L38950
subunit
signal recognition particle	1	X73459	+	+	+	+	+	+
14 kD (homologous Alu
RNA-binding protein)
(SRP14)
signal recognition particle	1	U51920			+	+		+
54 kD (SRP54)
signal recognition particle	2	U20998		+	+	+	+	+
9 kD (SRP9)
signal recognition particle	5	X06272
receptor (‘docking protein’)
SRPR
signal regulatory protein,	5	Y10376		+				+
beta, 1 (SIRP-BETA-1)
signal sequence receptor,	2	Z12830				+		+
alpha (translocon-
associated protein alpha)
(SSR1)
signal sequence receptor,	2	X74104	+	+	+	+		+
beta (translocon-
associated protein beta)
(SSR2)
signal transducer and	4	L41142	+	+	+	+	+	+
activator of transcription
(STAT5A)
signal transducer and	1	U18671						+
activator of transcription 2,
113 KD (STAT2)
signal transducer and	3	L29277
activator of transcription 3
(acute-phase response
factor) (STAT3)
signal transducer and	2	U48730	+	+	+	+	+	+
activator of transcription 5A
(STAT5A)
signal transducing adaptor	1	U43899
molecule (SH3 domain and
ITAM motif) 1 (STAM)
silencing mediator of	1	U37146
retinoid and thyroid
hormone action (SMRT)
similar to beta-transducin	1	U02609	+	+	+			+
superfamily proteins
(SAZD)
similar to S. cerevisiae	1	AB011169		+	+	+		+
SSM4 (TEB4)
similar to yeast pre-mRNA	1	AF026031	+	+	+	+		+
splicing factors, Prp1/Zer1
and Prp6
SIT protein	1	AJ010059.1
Sjogren syndrome antigen	2	M62800					+
A1 (52 kD,
ribonucleoprotein
autoantigen SS-A/Ro)
(SSA1)
Sjogren syndrome antigen	1	M62800
A1 (52 kD,
ribonucleoprotein
autoantigen SS-A/Ro)
(SSA1) (non-exact 63%)
(match to zinc finger)
SKAP55 homologue	1	AJ004886		+	+	+		+
(SKAP-HOM)
skb1 (S. pombe) homolog	2	AF015913	+	+	+	+		+
(SKB1)
skeletal muscle abundant	1	X87613	+	+	+	+		+
protein
SMA3 (SMA3)	1	X83300	+	+		+		+
small acidic protein	3	U51678	+	+	+	+		+
small EDRK-rich factor 2	2	Y10351	+	+	+	+	+	+	high in fetal lung
(SERF2)
small inducible cytokine A5	2	M21121	+	+	+	+	+	+	high in many libraries
(RANTES) (SCYA5)
small inducible cytokine	1	D63789
subfamily C, member 2
(SCYC2)
small nuclear	2	M15841		+	+	+		+
ribonucleoprotein
polypeptide B″ (SNRPB2)
small nuclear	4	J04615	+	+	+	+	+	+
ribonucleoprotein
polypeptide N (SNRPN)
small nuclear	2	J04564	+	+	+	+		+
ribonucleoprotein
polypeptides B and B1
(SNRPB)
small nuclear RNA	1	AF093593	+	+	+	+		+
activating complex,
polypeptide 5, 19 kD
(SNAPC5)
smallest subunit of	1	D55636	+	+	+	+	+	+	high in fetal lung
ubiquinol-cytochrome c
reductase
SMC (mouse) homolog, X	1	L25270	+	+	+	+		+
chromosome (SMCX)
SMT3B protein (2)	2	X99585	+	+	+	+	+	+
SNARE protein (YKT6) (low	1	U95735
match)
SNC19	1	U20428
SNC73 protein (SNC73)	2	J00220	+	+		+	+	+	high in many libraries
solute carrier family 1	2	U53347		+		+		+
(neutral amino acid
transporter), member 5
(SLC1A5)
Solute carrier family 11	7	D50403	+
(proton-coupled divalent
metal ion transporters),
member 1 (SLC11A1)
solute carrier family 17	1	U90545				+
(sodium phosphate),
member 3 (SLC17A3)
solute carrier family 19	1	U17566	B,	+			+
(folate transporter),			lymphoma
member 1 (SLC19A1)
solute carrier family 2	1	K03195	+	+	+	+	+	+
(facilitated glucose
transporter), member 1
(SLC2A1)
solute carrier family 23	3	D87075		+	+	+		+
(nucleobase transporters),
member 2 (SLC23A2)
solute carrier family 25	1	AF070548	B, T	+	+		+	+
(mitochondrial carrier;
oxoglutarate carrier),
member 11 (SLC25A11)
solute carrier family 31	3	U83461		+		+
(copper transporters),
member 2 (SLC31A2)
solute carrier family 4,	1	X62137		+	+			+
anion exchanger, member
2 (erythrocyte membrane
protein band 3-like 1)
(SLC4A2)
solute carrier family 4,	1	AB018282		+
sodium bicarbonate
cotransporter, member 8
(SLC4A8)
solute carrier family 7	2	M80244	T, W	+	+		+
(cationic amino acid
transporter, y+ system),
member 5 (SLC7A5)
solute carrier family 7	3	D87432	+	+	+			+
(cationic amino acid
transporter, y+ system),
member 6 (SLC7A6)
solute carrier family 7	1	D87432
(cationic amino acid
transporter, y+ system),
member 6 (SLC7A6) (non-
exact 77%)
solute carrier family 9	1	AF030409		+	+	+		+
(sodium/hydrogen
exchanger), isoform 6
(SLC9A6)
somatic cytochrome c	2	M22877
(HCS)
SON DNA binding protein	2	X63753		+	+	+		+
(SON)
son of sevenless	1	L13858	+	+		+
(Drosophila) homolog 1
(SOS1)
sorcin (SRI)	1	M32886
sortilin 1 (SORT1)	2	X98248		+		+		+
sortilin-related receptor,	6	Y08110
L(DLR class) A repeats-
containing (SORL1)
sorting nexin 1 (SNX1)	3	U53225	+	+	+	+		+
sorting nexin 2 (SNX2)	2	AF043453
sorting nexin 6 (SNX6)	1	AF121856.1
(=U83194.1 TRAF4-
associated factor 2)
Sp3 transcription factor	1	X68560	+	+	+	+		+
(SP3)
Sp3 transcription factor	4	M97191	+	+	+	+		+
(SP3)
special AT-rich sequence	1	M97287
binding protein 1 (binds to
nuclear matrix/scaffold-
associating DNA's)
(SATB1)
speckle-type POZ protein	4	AJ000644
(SPOP)
speckle-type POZ protein	1	AJ000644
(SPOP) (non-exact)
spectrin SH3 domain	6	U87166	+	+	+	+
binding protein 1
(SSH3BP1)
Spectrin, alpha, non-	2	J05243		+	+			+
erythrocytic 1 (alpha-fodrin)
(SPTAN1)
spermidine/spermine N1-	11	M55580
acetyltransferase (SAT)
spermidine/spermine N1-	1	U40369
acetyltransferase (SAT)
(non-exact, 84%)
spermine synthase (SMS)	1	AD001528	+	+	+	+		+
SPF31 (SPF31)	1	AF083190	+	+	+	+		+
sphingomyelin	1	X52679		+	+		+
phosphodiesterase 1, acid
lysosomal (acid
sphingomyelinase)
(SMPD1)
SPINDLIN HOMOLOG	1	Q99865
(PROTEIN DXF34)
spinocerebellar ataxia 1	3	X79204	B	+			+
(olivopontocerebellar ataxia
1, autosomal dominant,
ataxin 1) (SCA1)
spinocerebellar ataxia 2	1	U70323	B				+
(olivopontocerebellar ataxia
2, autosomal dominant,
ataxin 2) (SCA2)
spinocerebellar ataxia 7	2	AJ000517		+
(olivopontocerebellar
atrophy with retinal
degeneration) (SCA7)
spliceosome associated	3	U41371		+	+	+	+	+
protein (SAP 145)
splicing factor(CC1.3)	2	L10910	+	+	+	+	+	+
(CC1.3)
splicing factor SRp40-1	7	U30826	+	+	+	+	+	+
(SRp40)
splicing factor,	3	M74002	B	+	+		+	+
arginine/serine-rich 11
(SFRS11)
splicing factor,	4	L41887		+	+	+		+
arginine/serine-rich 7
(35 kD) (SFRS7)
Src-like adapter protein	1	U30473
(non-exact, 76% aa)
Src-like-adapter (SLA)	6	D89077		+	+	+		+
Src-like-adapter (SLA) (low	1	D89077
match)
Src-like-adapter (SLA) (low	1	U44403
score)
stannin (SNN)	2	AF030196	+	+	+	+		+
STAT induced STAT	1	AB004904				+
inhibitor 3 (SSI-3)
STE20-like kinase 3 (MST-	2	AF024636	+	+	+	+		+
3)
step II splicing factor SLU7	1	AF101074		+		+	+	+
(SLU7)
steroid sulfatase	1	M17591
steroid sulfatase	1	J04964		+	+	+
(microsomal), arylsulfatase
C, isozyme S (STS)
sterol carrier protein 2	1	M55421		+	+	+	+	+
(SCP2)
sterol O-acyltransferase	1	AF059202					+
(acyl-Coenzyme A:
cholesterol acyltransferase)
1 (SOAT1)
stimulated trans-acting	6	X82200	+	+		+
factor (50 kDa) (STAF50)
Striatin, calmodulin-binding	1	U17989
protein (STRN) (low match,
71% aa)
Stromal antigen 2 (STAG2)	2	Z75331			+	+	+	+
stromal interaction	3	U52426	+	+	+	+		+
molecule 1 (STIM1)
structure specific	1	M86737		+	+	+		+
recognition protein 1
(SSRP1)
succinate dehydrogenase	5	L21936			+
complex, subunit A,
flavoprotein (Fp) (SDHA)
succinate dehydrogenase	1	U17248	+	+	+	+		+
complex, subunit B, iron
sulfur (Ip)(SDHB)
succinate dehydrogenase	1	U57877	+	+	+	+		+
complex, subunit C,
integral membrane protein,
15 kD (SDHC)
succinate dehydrogenase	3	AB006202		+	+		+
complex, subunit D,
Integral membrane protein
(SDHD)
succinate-CoA ligase,	1	AF058954		+	+	+	+	+
GDP-forming, beta subunit
(SUCLG2)
succinyl CoA synthetase	1	Z68204
sudD (suppressor of	2	AF013591		+			+	+
bimD6, Aspergillus
nidulans) homolog (SUDD)
sulfotransferase family 1A,	1	L19999		+			+	+
phenol-preferring, member
1 (SULT1A1)
sulfotransferase family 1A,	1	U37686
phenol-preferring, member
3 (SULT1A3) (non-exact
67%)
superoxide dismutase 1,	4	X02317		+	+		+	+
soluble (amyotrophic lateral
sclerosis 1 (adult)) (SOD1)
superoxide dismutase 2,	5	Y00985		+	+	+	+	+
mitochondrial (SOD2)
supervillin (SVIL)	2	AF051851			+	+		+
suppression of	2	U15131		+		+		+
tumorigenicity 5 (ST5)
suppression of	1	U15779
tumorigenicity 5 (ST5)
(non-exact 82%)
suppressor of K+ transport	1	AF038960			+	+
defect 1 (SKD1)
suppressor of Ty	1	AF064804	+	+	+	+		+
(S. cerevisiae) 3 homolog
(SUPT3H)
suppressor of Ty	2	U38817	+	+	+	+		+
(S. cerevisiae) 4 homolog 1
(SUPT4H1)
suppressor of Ty	2	U56402		+				+
(S. cerevisiae) 5 homolog
(SUPT5H)
suppressor of Ty	2	U46691	+	+	+	+	+	+
(S. cerevisiae) 6 homolog
(SUPT6H)
suppressor of variegation	1	AF019968		+	+	+
3-9 (Drosophila) homolog 1
(SUV39H1)
survival of motor neuron 1,	1	U18423
telomeric (SMN1)
SWI/SNF related, matrix	1	M88163			+	+		+
associated, actin
dependent regulator of
chromatin, subfamily a,
member 1 (SMARCA1)
(non-exact, 75%)
SWI/SNF related, matrix	2	D26155		+
associated, actin
dependent regulator of
chromatin, subfamily a,
member 2 (SMARCA2)
SWI/SNF related, matrix	1	D26156	+	+	+	+	+	+
associated, actin
dependent regulator of
chromatin, subfamily a,
member 4 (SMARCA4)
SWI/SNF related, matrix	4	U66616	+	+	+	+	+	+
associated, actin
dependent regulator of
chromatin, subfamily c,
member 2 (SMARCC2)
SWI/SNF related, matrix	2	AF035262	B, W	+	+		+	+
associated, actin
dependent regulator of
chromatin, subfamily e,
member 1 (SMARCE1)
synaptobrevin-like 1	1	X95803		+	+	+		+
(SYBL1)
synaptosomal-associated	2	AJ011915		+	+	+		+
protein, 23 kD (SNAP23)
syndecan binding protein	15	AF006636	+	+	+	+		+
(syntenin) (SDCBP)
synovial sarcoma,	2	X79201		+
translocated to X
chromosome (SSXT)
syntaxin 16	1	AF038897
syntaxin 3A (STX3A)	2	U32315		+		+		+
syntaxin 6 (STX6)	1	AJ002078.1
SYNTAXIN BINDING	1	O00186
PROTEIN 3 (UNC-18
HOMOLOG 3) (UNC-18C)
syntaxin-16C	1	AF008937
SYT interacting protein	1	AF080561		+	+	+		+
(SIP)
T cell activation, increased	4	M88282				+
late expression (TACTILE)
T cell receptor V alpha	2	X58744
gene segment V-alpha-7
(clone IGRa11)
T cell receptor V alpha	1	X58740
gene segment V-alpha-w27
T3 receptor-associating	5	S83390	+	+	+	+	+	+
cofactor-1
tafazzin (cardiomyopathy,	1	X92763	+	+		+		+
dilated 3A (X-linked);
endocardial fibroelastosis
2; Barth syndrome) (TAZ)
TAFII100 protein (non-	1	U80191
exact 53%)
tankyrase, TRF1-	1	AF082556		+	+	+		+
interacting ankyrin-related
ADP-ribose polymerase
(TNKS)
TAP1, TAP2, LMP2, LMP7	1	X66401
and DOB
TAR DNA-binding protein-	6	U23731	+	+	+	+		+
43
Tat interactive protein	2	U40989	+	+	+	+		+
(60 kD) (TIP60)
TATA box binding protein	1	O00268
(TBP)-associated factor,
RNA polymerase II, C1,
130 kD (TAF2C1) (non-
exact, 55%)
TATA box binding protein	4	X97999		+	+	+	+	+
(TBP)-associated factor,
RNA polymerase II, F,
55 kD (TAF2F)
TATA box binding protein	2	U21858		+	+	+	+	+
(TBP)-associated factor,
RNA polymerase II, G,
32 kD (TAF2G)
TATA box binding protein	1	D63705	+	+	+	+		+
(TBP)-associated factor,
RNA polymerase II, I, 28 kD
(TAF2I)
Tax1 (human T-cell	1	U33821		+	+	+	+	+
leukemia virus type I)
binding protein 1
(TAX1BP1)
T-box 2 (TBX2) (non-exact	1	U28049			+	+		+
77%)
TBP-associated factor 172	1	AJ001017		+		+		+
(TAF-172)
T-cell death-associated	1	U95218				+
gene 8 (TDAG8)
T-cell leukemia/lymphoma	1	X82240	+
1A (TCL1A)
T-cell leukemia/lymphoma	1	X82240
1A (TCL1A) (low match)
T-cell receptor (delta D2-	1	M22197
J1-region) (clone K3B)
T-cell receptor (V beta 5.1,	1	M97705
J beta 1.5, C beta 1) (low
match)
T-cell receptor alpha delta	2	AE000662
(=M94081)
T-cell receptor alpha	1	B39625
enhancer-binding protein,
short form (=X58636
Mouse LEF1 lymphoid
enhancer binding factor 1
(=D16503))
T-cell receptor delta gene	1	M22197
D2-J1-region, clone K3B
T-cell receptor germline	1	M11955
beta chain gene V-region
(V) V-beta-MT1-1
T-cell receptor germline	1	M14159	+						only in blood
beta-chain gene J2.1 exon
T-cell receptor germline	2	M22152
delta-chain D-J region
T-cell receptor interacting	2	AJ224878						+
molecule (TRIM) protein
T-cell receptor rearranged	1	M21784
delta-chain, V-region (V-
delta 3-J)
T-cell receptor, alpha	3	AE000660	+	+	+	+		+
(V, D, J, C) (TCRA)
T-cell receptor, beta cluster	3	L34740	+	+	+	+	+	+	high in pancreas
(TCRB)
T-cell receptor, delta	2	X73617			+	+		+
(V, D, J, C) (TCRD)
T-cell, immune regulator 1	3	U45285							only found in tumor
(TCIRG1)
TCF-1 mRNA for T cell	1	X59870
factor 1
TCF-1 mRNA for T cell	1	X59870
factor 1 (splice form B) (low
match)
T-COMPLEX PROTEIN 1,	1	Q99832
ETA SUBUNIT (TCP-1-
ETA) (CCT-ETA) (HIV-1
NEF INTERACTING
PROTEIN)
T-COMPLEX PROTEIN 1,	1	P50990
THETA SUBUNIT (TCP-1-
THETA) (CCT-THETA)
(KIAA0002)
TCR eta = T cell	1	S94421
receptor(eta-exon)
TCR V Beta 13.2	1	X75419
TERA	1	AC004472
testis enhanced gene	33	X75861	+	+	+	+	+	+
transcript (TEGT)
tetracycline transporter-like	2	L11669		+	+	+		+
protein (TETRAN)
tetratricopeptide repeat	1	U46570	+	+	+	+		+
domain 1 (TTC1)
tetratricopeptide repeat	1	U46571		+		+		+
domain 2 (TTC2)
tetratricopeptide repeat	1	D84296	+	+	+	+		+
domain 3 (TTC3)
TGFB1-induced anti-	1	D86970	+	+	+	+		+
apoptotic factor 1 (TIAF1)
thioredoxin reductase 1	3	S79851		+	+	+		+
(TXNRD1)
THIOREDOXIN-	1	P30048
DEPENDENT PEROXIDE
REDUCTASE
PRECURSOR,
mitochondrial (ANTI-
OXIDANT PROTEIN 1)
(AOP-1)
threonyl-tRNA synthetase	1	M63180		+	+	+		+
(TARS)
thrombin inhibitor	1	Z22658
thrombospondin 1 (THBS1)	2	X04665		+	+	+	+	+
thromboxane A synthase 1	1	M80647		+		+	+	+
(platelet, cytochrome P450,
subfamily V) (TBXAZ1)
thymidine kinase 2,	2	X76104		+	+		+
mitochondrial (TK2)
thymidylate kinase (CDC8)	1	L16991		+	+	+		+
thymine-DNA glycosylase	2	U51166	+	+	+	+		+
(TDG)
Thymosin, beta 10	2	M20259	+	+	+	+	+	+
(TMSB10)
thymosin, beta 4, X	29	M17733		+	+	+		+
chromosome (TMSB4X)
thyroid autoantigen 70 kD	7	J04611
(Ku antigen) (G22P1)
thyroid hormone receptor	1	AF016270		+		+		+
coactivating protein
(SMAP)
thyroid hormone receptor	2	L40357		+	+	+		+
interactor 7 (TRIP7)
thyroid hormone receptor	4	L40411		+
interactor 8r (TRIP8)
thyroid hormone receptor-	1	D83783
associated protein, 230 kDa
subunit (TRAP230)
thyroid receptor interacting	2	L40388	+	+	+	+
protein 15 (TRIP15)
TI-227H	1	D50525
TIA1 cytotoxic granule-	1	M77142		+	+	+		+
associated RNA-binding
protein (TIA1)
tissue inhibitor of	1	X02598	+	+	+	+	+	+
metalloproteinase 1
(erythroid potentiating
activity, collagenase
inhibitor) (TIMP1)
tissue inhibitor of	1	M32304	+	+	+	+		+	high in placenta
metalloproteinase 2
(TIMP2)
tissue specific	1	U58766	+	+	+	+		+
transplantation antigen
P35B (TSTA3)
titin (TTN)	1	X64697	+	+	+	+		+	high in muscle
TNF receptor-associated	1	U12597		+	+	+		+
factor 2 (TRAF2)
TNF receptor-associated	1	AF110908.1		+
factor 3 (TRAF3)
TNF receptor-associated	1	U78798
factor 6 (TRAF6) (low
match)
toll-like receptor 1 (TLR1)	1	U88540				+
toll-like receptor 2 (TLR2)	1	U88878	+	+		+		+
toll-like receptor 4 (TLR4)	1	U88880		+			+
toll-like receptor 5 (TILR5)	1	AF051151		+		+
topoisomerase (DNA) I	1	J03250		+	+	+
(TOP1)
topoisomerase (DNA) II	2	X68060	+	+	+	+		+
beta (180 kD) (TOP2B)
topoisomerase (DNA) III	3	D87012	+
beta (TOP3B)
TR3beta	1	D85245		+
TRAF family member-	3	U63830	+	+	+	+	+	+
associated NF-kB activator
(TANK)
TRANSALDOLASE	1	P37837
transaldolase 1 (TALDO1)	4	L19437		+	+	+	+	+
transaldolase-related	1	AF010398
protein
transcobalamin II (TCII)	1	AF047576
transcription elongation	2	Z47087	+	+	+	+		+
factor B (SIII), polypeptide
1-like (TCEB1L)
transcription elongation	1	L47345	+	+	+	+	+	+
factor B (SIII), polypeptide
3 (110 kD, elongin A)
(TCEB3)
transcription factor 12	1	M83233	+	+	+	+		+
(HTF4, helix-loop-helix
transcription factors 4)
(TCF12)
transcription factor 17	2	D89928		+		+
(TCF17)
transcription factor 4	2	X52079		+	+	+		+
(TCR4)
transcription factor 6-like 1	2	M62810	+	+	+	+
(mitochondrial transcription
factor 1-like) (TCF6L1)
transcription factor 7-like 2	1	Y11306		+	+	+		+
(T-cell specific, HMG-box)
(TCF7L2)
transcription factor binding	1	X96717	+	+	+	+		+
to IGHM enhancer 3 (TFE3
transcription factor IL-4	7	AF067575	+	+	+	+	+	+
Stat
transcription factor IL-4	1	U16031
Stat (low match)
transcription factor ISGF-3	4	M97935
(=M97936)
transcription factor REST	1	A56138
transcription factor TFIID	1	Z22828
transcriptional adaptor 2	1	AF064094
(ADA2, yeast, homolog)-
like (TADA2L)
transcriptional intermediary	1	AF009353
factor 1 (TIF1) (non-exact
72%)
transducin (beta)-like 1	1	Y12781	+	+	+	+		+
(TBL1)
transducin-like enhancer of	1	M99438	+	+
split 3, homolog of
Drosophila E(sp1) (TLE3)
Transformation/transcription	1	AF076974	+	+	+	+		+
domain-associated
Protein (TRRAP)
transformation-sensitive,	2	M86752		+	+	+		+
similar to Saccharomyces
cerevisiae STI1 (STI1L)
transforming growth factor	1	AB009356
beta-activated kinase 1
(TAK1) (non-exact 78%)
transforming growth factor	3	AJ222700	+	+	+	+		+
beta-stimulated protein
TSC-22 (TSC22)
transforming growth factor,	1	L07594		+	+	+		+
beta receptor III
(betaglycan, 300 kD)
(TGFBR3)
transforming growth factor,	2	4507466	+	+	+	+	+	+
beta-induced, 68 kD
(TGFBI)
TRANSFORMING	2	Q15582
GROWTH FACTOR-BETA
INDUCED PROTEIN IG-H3
PRECURSOR (BETA IG-
H3)
transforming, acidic coiled-	1	AF049910
coil containing protein 1
(TACC1) (non-exact 70%)
transgelin 2 (TAGLN2)	14	D21261	+	+	+	+	+	+
transgelin 2 (TAGLN2)	1	D21261
(non-exact)
trans-Golgi network protein	2	AF029316		+		+
(46, 48, 51 kD isoforms)
(TGN51)
transient receptor potential	1	X89066		+	+	+		+
channel 1 (TRPC1)
transketolase (Wernicke-	7	L12711		+	+	+		+
Korsakoff syndrome) (TKT)
translation factor sui1	1	AF064607		+	+	+	+	+
homolog (GC20)
translin (TSN)	3	X78627	+	+	+	+		+
translin-associated factor X	1	X95073		+	+	+		+
(TSNAX)
transmembrane	1	U79725
glycoprotein (A33)
transmembrane protein	1	X69910	+	+	+	+		+
(63 kD), endoplasmic
reticulum/Golgi
intermediate compartment
(P63)
transmembrane protein 1	1	AB001523		+		+		+
(TMEM2)
TRANSMEMBRANE	1	P51805
PROTEIN SEX
PRECURSOR (non-exact
65%)
transmembrane trafficking	2	X97442	+	+	+	+	+	+
protein (TMP21)
transporter 1, ABC (ATP	3	L21208	+	+	+	+		+
binding cassette) (TAP1)
Treacher Collins-	2	U40847	+	+	+	+		+	high in many libraries
Franceschetti syndrome 1
(TCOF1)
triosephosphate isomerase	2	X69723	+	+	+	+	+	+
1 (TPI1)
tropomyosin	2	X04201		+	+	+		+
tropomyosin 4 (TPM4)	2	X05276	+	+	+	+		+
TRPM-2 protein	2	M63376
tryptase I precursor (non-	1	A35863
exact 64%)(=P20231)
tryptophan rich basic	1	Y12478
protein (WRB)
tryptophanyl-tRNA	1	X59892	+	+	+	+	+	+
synthetase (WARS)
Ts translation elongation	1	L37936	+	+		+		+
factor, mitochondrial
(TSFM)
ttopoisomerase (DNA) II	1	Z15115		+	+			+
beta (180 kD)
Tu translation elongation	4	L38995
factor, mitochondrial
(TUFM)
tuberous sclerosis 1	1	AF013168		+	+	+		+
(TSC1)
tuberous sclerosis 2	1	X75621		+	+	+		+
(TSC2)
tubulin, alpha 1 (testis	1	X06956		+			+
specific) (TUBA1)
tubulin, alpha, ubiquitous	11	K00558	+	+	+	+	+	+	high in many libraries
(K-ALPHA-1)
tubulin, alpha, ubiquitous	1	K00558
(K-ALPHA-1) (low match)
tubulin-specific chaperone	1	U61234		+	+	+		+
c (TBCC)
tumor necrosis factor	7	U37518		+	+	+		+
(ligand) superfamily,
member 10 (TNFSF10)
tumor necrosis factor	1	AF046888	+	+		+		+
(ligand) superfamily,
member 13 (TNFSF13)
tumor necrosis factor	1	AF036581
(ligand) superfamily,
member 14 (TNFSF14)
tumor necrosis factor	1	D38122	+						Found only in library
(ligand) superfamily,									386: T-cell lymphoma
member 6 (TNFSF6)
tumor necrosis factor	1	L09753	B only
(ligand) superfamily,
member 8 (TNFSF8)
tumor necrosis factor	1	AF061034		+	+	+		+
alpha-inducible cellular
protein containing leucine
zipper domains (FIP2)
Tumor necrosis factor	2	M63928		+			+
receptor superfamily
member 7 (TNFRSF7)
tumor necrosis factor	1	AF016266		+	+	+	+	+
receptor superfamily,
member 10b (TNFRSF10B)
tumor necrosis factor	3	AF012629					+
receptor superfamily,
member 10c, decoy without
an intracellular domain
(TNFRSF10C)
tumor necrosis factor	1	AF023849							found only in prostate
receptor superfamily,
member 10d, decoy with
truncated death
domain (TNFRSF10D)
(non-exact 84%)
tumor necrosis factor	1	U94508	+	+	+	+		+
receptor superfamily,
member 12 (translocating
chain-association
membrane protein)
(TNFRSF12)
tumor necrosis factor	1	U70321	+	+	+	+		+
receptor superfamily,
member 14 (herpesvirus
entry mediator)
(TNFRSF14)
tumor necrosis factor	5	U52165	+	+	+	+		+
receptor superfamily,
member 1B (TNFRSF1B)
tumor necrosis factor	1	X63717	B, W					+
receptor superfamily,
member 6 (TNFRSF6)
tumor necrosis factor	1	M63928	+	+
receptor superfamily,
member 7 (TNFRSF7)
tumor necrosis factor,	8	M92357		+	+		+
alpha-induced protein 2
(TNFAIP2)
tumor necrosis factor,	2	M59465
alpha-induced protein 3
(TNFAIP3)
tumor protein 53-binding	1	AF078776		+	+	+		+
protein, 1 (TP53BP1)
tumor protein p53 (Li-	1	M14695	+	+				+
Fraumeni syndrome)
(TP53)
Tumor protein p53-binding	1	U82939	+			+		+
protein (TP53BPL)
tumor protein,	35	X16064
translationally-controlled 1
(TPT1)
tumor protein,	1	X16064
translationally-controlled 1
(TPT1) (low score)
tumor rejection antigen	9	X15187	+	+	+	+	+	+
(gp96) 1 (TRA1)
tumorous imaginal discs	2	AF061749		+
(Drosophila) homolog
(TID1)
TXK tyrosine kinase (TXK)	2	L27071
type II integral membrane	1	AJ001685					+		found only in fetal
protein (NKG2-E)									liver/spleen
TYRO protein tyrosine	3	AF019562			+
kinase binding protein
(TYROBP)
tyrosine 3-	1	X57346	+	+	+	+		+	high in ecnorm
monooxygenase/tryptophan
5-monooxygenase
activation protein, beta
polypeptide (YWHAB)
tyrosine 3-	1	M86400
monooxygenase/tryptophan
5-monooxygenase
activation protein, zeta
polypeptide
(YWHAZ)
tyrosine 3-	1	M86400
monooxygenase/tryptophan
5-monooxygenase
activation protein, zeta
polypeptide (YWHAZ)
Tyrosine kinase 2 (TYK2)	3	X54637		+	+	+		+
TYROSINE-PROTEIN	2	P43403
KINASE ZAP-70 (70 KD
ZETA-ASSOCIATED
PROTEIN) (SYK-RELATED
TYROSINE KINASE)
tyrosyl-tRNA synthetase	1	U89436	+	+	+	+		+
(YARS)
U1 small nuclear RNA	1	M14387
U19H snoRNA (=M63485	1	AJ224166
R. norvegicus matrin 3)
U2(RNU2) small nuclear	1	M96982		+	+	+		+
RNA auxilary factor 1 (non-
standard symbol) (U2AF1)
U22 snoRNA host gene	2	U40580
(UHG)
U4/U6-associated RNA	4	AF016370		+	+	+		+
splicing factor (HPRP3P)
U49 small nuclear RNA	1	X96649
U5 snRNP-specific protein	1	AB007510	+	+	+	+		+
(220 kD), ortholog of
S. cerevisiae
Prp8p (PRP8)
U5 snRNP-specific protein,	4	D21163	+	+	+	+		+
116 kD (U5-116 KD)
U5 snRNP-specific protein,	3	Z70200
200 kDa (DEXH RNA
helicase family) (U5-200-
KD)
Uba80 mRNA for ubiquitin	4	S79522	+	+	+	+	+	+	high in ovary
ubiquinol-cytochrome c	1	D55636	+	+	+	+	+	+	high in fetal lung
reductase (6.4 kD) subunit
(UQCR)
UBIQUINOL-	1	P47985
CYTOCHROME C
REDUCTASE IRON-
SULFUR SUBUNIT
PRECURSOR (RIESKE
IRON-SULFUR PROTEIN)
(RISP) (low match)
ubiquitin A-52 residue	2	X56999
ribosomal protein fusion
product 1 (UBA52)
ubiquitin activating enzyme	1	AF094516		+	+			+
E1-like protein (GSA7)
ubiquitin C (UBC)	5	AB009010		+	+	+	+	+	high in ovary
ubiquitin carboxyl-terminal	1	M30496	+	+	+	+		+
esterase L3 (ubiquitin
thiolesterase) (UCHL3)
ubiquitin fusion degradation	1	U64444	+	+	+	+		+
1-like (UFD1L)
ubiquitin protein ligase E3A	1	U84404	B	+	+			+
(human papilloma virus E6-
associated protein,
Angelman syndrome)
(UBE3A)
ubiquitin specific protease	4	D80012	+	+	+	+		+
10 (USP10)
ubiquitin specific protease	1	U44839	+	+	+	+	+	+
11 (USP11)
ubiquitin specific protease	3	AB011101	+	+	+	+		+
15 (USP15)
ubiquitin specific protease	1	AB020698		+
19 (USP19)
ubiquitin specific protease	1	AF017305	B	+	+		+	+
4 (proto-oncogene) (USP4)
ubiquitin specific protease	1	AF017306
4 (proto-oncogene) (USP4)
(non-exact, 66%)
ubiquitin specific protease	1	Z72499		+	+	+		+
7 (herpes virus-associated)
(USP7)
ubiquitin specific protease	5	D29956		+	+	+		+
8 (USP8)
UBIQUITIN-ACTIVATING	1	P22314
ENZYME E1 (A1S9
PROTEIN) (56%)
ubiquitin-activating enzyme	1	M58028	+	+	+	+		+
E1 (A1S9T and BN75
temperature sensitivity
complementing) (UBE1)
ubiquitin-activating enzyme	1	L34170	+	+		+		+
E1, like (UBE1L)
UBIQUITIN-BINDING	1	U41806			+		+
PROTEIN P62;
phosphotyrosine
independent ligand for the
Lck SH2 domain p62 (P62)
ubiquitin-conjugating	2	U49278	+	+	+	+	+	+
enzyme E2 variant 1
(UBE2V1)
ubiquitin-conjugating	1	X98091
enzyme E2 variant 2
(UBE2V2)
UBIQUITIN-	1	Q16781
CONJUGATING ENZYME
E2-17 KD (UBIQUITIN-
PROTEIN LIGASE)
ubiquitin-conjugating	1	M74525	+	+	+	+		+
enzyme E2B (RAD6
homolog) (UBE2B)
ubiquitin-conjugating	1	AF032456	+	+	+	+		+
enzyme E2G 2
(homologous to yeast
UBC7) (UBE2G2)
ubiquitin-conjugating	1	Z29328	+	+	+	+		+
enzyme E2H (homologous
to yeast UBC8) (UBE2H)
ubiquitin-conjugating	1	X92962		+	+			+
enzyme E2L 1 (UBE2L1)
ubiquitin-conjugating	3	AJ000519		+	+	+		+
enzyme E2L 3 (UBE2L3)
ubiquitin-conjugating	4	AF031141		+	+	+	+	+
enzyme E2L 6 (UBE2L6)
ubiquitin-like 1 (sentrin)	2	U61397	+	+	+	+		+
(UBL1)
UDP-N-acetyl-alpha-D-	2	X85019
galactosamine: polypeptide
N-
acetylgalactosaminyltransf
erase 2 (GalNAc-T2)
(GALNT2)
UDP-N-acetyl-alpha-D-	1	X92689
galactosamine: polypeptide
N-
acetyl-
galactosaminyltransferase 3
(GalNAc-T3) (GALNT3)
(non-exact 65%)
unactive progesterone	2	L24804		+	+	+		+
receptor, 23 Kd (P23)
unconventional myosin-ID	3	U57053
(MYO1F)
uncoupling protein	1	U94592
homolog (UCPH)
uncoupling protein	1	U94592
homolog (UCPH) (low
match 67%)
Unknown gene product	1	AC002310
unknown mRNA (clone	1	AF070542
24514)
unknown protein (clone	2	Z70223
ICRFp507L0677)
unknown protein	1	AF070626	+	+	+	+	+	+
(Hs. 93832)
unknown protein IT14	1	AF040966
uppressor of Ty	1	D79984	+	+	+	+	+	+
(S. cerevisiae) 6 homolog
upregulated by 1,25-	74	S73591	+	+	+	+		+	high in heart
dihydroxyvitamin D-3
(VDUP1)
upregulated by 1,25-	1	S73591
dihydroxyvitamin D-3
(VDUP1) (low match)
upregulated by 1,25-	1	S73591
dihydroxyvitamin D-3
(VDUP1) (low match)
upregulated by 1,25-	1	S73591
dihydroxyvitamin D-3
(VDUP1) (low score)
upstream binding factor	1	X53461	+	+		+		+
(hUBF)
UV radiation resistance	2	X99050		+	+	+		+
associated gene (UVRAG)
vacuolar proton-ATPase,	4	X71490		+	+	+	+	+
subunit D; V-ATPase,
subunit D (ATP6DV)
v-akt murine thymoma viral	1	M63167	+	+	+	+		+
oncogene homolog 1
(AKT1)
Vanin 2 (VNN2)	3	AJ132100
vasodilator-stimulated	3	Z46389	+		+	+		+
phosphoprotein (VASP)
vav 1 oncogene (VAV1)	1	M59834						+
vav 2 oncogene (VAV2)	1	S76992	+	+
v-crk avian sarcoma virus	1	D10656	W	+	+		+
CT10 oncogene homolog
(CRK)
v-erb-b2 avian	1	M29366						+
erythroblastic leukemia
viral oncogene homolog 3
(ERBB3)
VERSICAN CORE	1	P13611
PROTEIN PRECURSOR
Vesicle-associated	1	M36196		+	+	+		+
membrane protein 1
(synaptobrevin 1) (VAMP1)
vesicle-associated	1	U64520
membrane protein 3
(cellubrevin) (VAMP3)
v-fos FBJ murine	26	K00650		+	+	+	+	+	high in aorta
osteosarcoma viral
oncogene homolog (FOS)
v-fos FBJ murine	1	K00650
osteosarcoma viral
oncogene homolog (FOS)
(low match)
villin 2 (ezrin) (VIL2)	1	X51521	+	+	+	+		+
villin-like protein	1	D88154
vimentin (VIM)	12	X56134		+	+	+	+	+	high in many libraries
vinculin (VCL)	4	M33308		+	+	+		+
vitamin A responsive;	6	AF070523		+	+	+		+
cytoskeleton related (JWA)
v-jun avian sarcoma virus	2	U65928	+	+	+	+		+
17 oncogene homolog
(JUN)
v-myb avian myeloblastosis	1	M15024			+		+
viral oncogene homolog
(MYB)
voltage-dependent anion	1	L06132	+	+	+	+		+
channel 1 (VDAC1)
voltage-dependent anion	4	U90943		+	+	+		+
channel 3 (VDAC3)
von Hippel-Lindau	1	L15409		+	+	+		+
syndrome (VHL)
von Willebrand factor	1	X06828
(vWF) (low matched)
v-raf murine sarcoma 3611	2	L24038	+	+	+	+
viral oncogene homolog 1
(ARAF1)
v-raf-1 murine leukemia	1	X03484	+	+	+	+		+
viral oncogene homolog 1
(RAF1)
v-ral simian leukemia viral	3	M35416
oncogene homolog B (ras
related; GTP binding
protein) (RALB)
V-rel avian	1	L19067		+	+	+		+
reticuloendotheliosis viral
oncogene homolog A
(nuclear factor of kappa
light polypeptide gene
enhancer in B-cells 3
(p65)) (RELA)
v-yes-1 Yamaguchi	2	M16038	+	+		+		+
sarcoma viral related
oncogene homolog (LYN)
WD repeat domain 1	1	AB010427	+	+	+	+	+	+
(WDR1)
WDR1 (=AF020260)	1	AF020056
WD-repeat protein	2	U94747		+	+			+
(HAN11)
Williams-Beuren syndrome	12	AF045555	+	+	+	+	+	+
chromosome region 1
(WBSCR1)
Wiskott-Aldrich syndrome	4	X86019	+	+	+			+
protein interacting protein
(WASPIP)
X (inactive)-specific	2	M97168
transcript (XIST)
xeroderma pigmentosum,	3	D21089	+	+	+	+
complementation group C
(XPC)
XIAP associated factor-1	2	X99699				+
XIB	1	X90392		+	+		+	+
X-linked anhidroitic	1	AF003528
ectodermal dysplasia
X-ray repair	1	M30938	+	+	+	+		+	high in spleen
complementing defective
repair in Chinese hamster
cells 5 (double-strand-
break
rejoining; Ku autoantigen,
80 kD) (XRCC5)
XRP2 protein	1	AJ007590
yeloid differentiation	1	U84408		+	+	+		+
primary response gene
(88) (MYD88)
zeta-chain (TCR)	1	L05148	+			+
associated protein kinase
(70 kD) (ZAP70)
zeta-chain (TCR)	1	L05148
associated protein kinase
(70 kD) (ZAP70) (low
match)
zinc finger protein	2	U69274	+	+	+	+		+
(Hs.47371)
zinc finger protein	1	U69645	+	+	+	+		+
(Hs.78765)
zinc finger protein 10 (KOX	1	X78933						+
1) (ZNF10)								only
ZINC FINGER PROTEIN	1	Q15973
124 (HZF-16) (non-exact
51%)
zinc finger protein 124	1	S54641
(HZF-16) (ZNF124) (non-
exact, 78%)
ZINC FINGER PROTEIN	1	P52736
133
zinc finger protein 136	1	U09367			+	+
(clone pHZ-20) (ZNF136)
zinc finger protein 140	1	U09368		+		+		+
(clone pHZ-39) (ZNF140)
zinc finger protein 140	1	AF060865
(clone pHZ-39) (ZNF140)
(non-exact 59%)
zinc finger protein 140	1	U09368
(clone pHZ-39) (ZNF140)
(non-exact 73%)
zinc finger protein 140	1	S66508
(clone pHZ-39) (ZNF140)
(non-exact 73% aa)
zinc finger protein 140	1	U09368
(clone pHZ-39) (ZNF140)
(non-exact, 80%)
zinc finger protein 143	2	U09850	+	+	+	+	+	+
(clone pHZ-1) (ZNF143)
zinc finger protein 143	1	U09850
(clone pHZ-1) (ZNF143)
(low match)
zinc finger protein 148	1	AF039019	+
(pHZ-52) (ZNF148)
ZINC FINGER PROTEIN	1	Q13105
151 (MIZ-1 PROTEIN) (low
match)
zinc finger protein 173	1	U09825	B, T	+	+		+
(ZNF173)
zinc finger protein 192	1	U57796
(ZNF192) (non-exact, 66%)
zinc finger protein 198	1	AJ224901		+	+	+
(ZNF198)
zinc finger protein 2 (ZNF2)	1	X60152
(low match)
zinc finger protein 200	1	AF060866		+		+
(ZNF200)
zinc finger protein 207	6	AF046001	+	+	+	+	+	+	high in prostate
(ZNF207)
zinc finger protein 216	2	AF062072	+	+	+	+		+
(ZNF216)
zinc finger protein 217	1	AF041259	T activated					+
(ZNF217)
ZINC FINGER PROTEIN	1	P17026
22 (ZINC FINGER
PROTEIN KOX15) (non-
exact 58%)
zinc finger protein 230	1	U95044		+
(ZNF230)
Zinc finger protein 239	1	L26914		+		+
(ANF239)
zinc finger protein 261	1	AB002383		+	+	+		+
(ZNF261)
zinc finger protein 262	1	AB007885		+	+	+		+
(ANF262)
zinc finger protein 263	1	D88827
(ZNF263)
zinc finger protein 264	1	AB007872		+	+	+
(ZNF264)
ZINC FINGER PROTEIN	1	Q06730
33A (ZINC FINGER
PROTEIN KOX31)
(KIAA0065) (HA0946)
zinc finger protein 42	1	M58297	+	+	+	+		+
(myeloid-specific retinoic
cid-responsive) (ZNF42)
zinc finger protein 43	1	X59244
(HTF6) (ZNF43) (low
match)
zinc finger protein 43	1	X59244
(HTF6) (ZNF43) (non-
exact, 54%)
zinc finger protein 43	1	X59244
(HTF6) (ZNF43) (non-
exact, 71%)
ZINC FINGER PROTEIN	1	P28160
43 (ZINC PROTEIN HTF6)
(non-exact 67%)
zinc finger protein 45 (a	1	L75847							only found in testis
Kruppel-associated box
(KRAB) domain
polypeptide) (ZNF45)
ZINC FINGER PROTEIN	1	P24278
46 (ZINC FINGER
PROTEIN KUP) (non-exact
62%)
zinc finger protein 6	1	X56465		+	+	+		+
(CMPX1) (ZNF6)
zinc finger protein 74	1	X71623
(Cos52) (ZNF74) (non-
exact, 67%)
zinc finger protein 76	1	M91592		+	+	+		+
(expressed in testis)
(ZNF76)
ZINC FINGER PROTEIN	1	P51522
83 (ZINC FINGER
PROTEIN HPF1) (non-
exact 65%)
zinc finger protein 84	1	M27878	T activated	+	+			+
(HPF2) (ZNF84)
zinc finger protein 85	2	U35376		+	+	+
(ZNF85))
zinc finger protein 9 (ZNF9)	5	M28372		+	+	+	+	+
ZINC FINGER PROTEIN	1	P35789
93 (=ZINC FINGER
PROTEIN HTF34) (non-
exact 70%)
zinc finger protein C2H2-25	3	U38904		+	+	+
(ZNF25)
zinc finger protein clone	1	AF024706
L3-4
zinc finger protein	4	M92843	+						blood only
homologous to Zfp-36 in
mouse (ZFP36)
ZINC FINGER PROTEIN	1	Q03164
HRX (ALL-1) (71% a.a.)
zinc finger protein HZF4	1	X78927
zinc finger protein RIZ	1	D45132	+	+	+	+		+
zinc finger protein,	1	U40462	+
subfamily 1A, 1 (Ikaros)
(LYF1)
zinc finger protein,	1	U40462
subfamily 1A, 1 (Ikaros)
(LYF1) (low match)
zinc finger transcriptional	1	M92844
regulator (GOS24)
zinc-finger helicase (hZFH)	2	U91543	+	+	+	+		+
Zn-15 related zinc finger	1	U22377		+	+	+
protein (rlf)
Zn-15 related zinc finger	1	U22377
protein (rlf) (non-exact
56%)
ZNF80-linked ERV9 long	1	X83497
terminal repeat
ZW10 (Drosophila)	2	U54996		+
homolog,
centromere/kinetochore
protein (ZW10)
zyxin (ZYX)	4	X95735
Column 1: List of unique genes derived from 6,283 known ESTs from blood cells.
Column 2: Number of genes found in randomly sequenced ESTs from blood cells.
Column 3: Accession number.
Column 4: “+” indicates the presence of the unique gene in publicly available cDNA libraries of blood (Bl), brain (Br), heart (H), kidney (K), liver (Li) and lung (Lu).
**Comparison to previously identified tissue-specific genes was determined using the GenBank of the National Centre of Biotechnology Information (NCBI) Database.

Discussion

Every cell and tissue comprising the human body share the necessary genetic information required to maintain cellular homeostasis. These “housekeeping” genes function in basic cellular maintenance, including energy metabolism and cellular structure in all cell types. However, in certain situations, even the housekeeping genes show altered expression. Thus, it is necessary to define the use of these genes as internal controls from one investigation to another. Current results from the human blood cell EST database indicate that over 50% of the transcripts are widely expressed throughout the human body. Most of the cell or tissue specific genes are also detectable in blood cells by RT-PCR analysis.

For example, isoformic myosin heavy chain genes are known to be generally expressed in cardiac muscle tissue. In the rodent, the βMyHC gene is only highly expressed in the fetus and in diseased states such as overt cardiac hypertrophy, heart failure and diabetes; the βMyHC gene is highly expressed shortly after birth and continues to be expressed in the adult heart. In the human, however, βMyHC is highly expressed in the ventricles from the fetal stage through adulthood. This highly expressed βMyHC, which harbours several mutations, has been demonstrated to be involved in familial hypertrophic cardiomyopathy (Geisterfer-Lowrance et al. 1990). It was reported that mutations of βMyHC can be detected by PCR using blood lymphocyte DNA (Ferrie et al., 1992). Most recently, it was also demonstrated that mutations of the myosin-binding protein C in familial hypertrophic cardiomyopathy can be detected in the DNA extracted from lymphocytes (Niimura et al., 1998).

Similarly, APP and APC, which are known to be tissue specific and predominantly expressed in the brain and intestinal tract, are also detectable in the transcripts of blood. These cell- or tissue-specific transcripts are not detectable by Northern blot analysis. However, the low number of transcript copies can be detected by RT-PCR analysis. These findings strongly demonstrate that genes preferentially expressed in specific tissues can be detected by a highly sensitive RT-PCR assay. In recent years, evidence has been obtained to indicate that expression of cell or tissue-restricted genes can be detected in the peripheral blood of patients with metastatic transitional cell carcinoma (Yuasa et al. 1998) and patients with prostate cancer (Gala et al. 1998).

Atrial natriuretic factor (ANF) and zinc finger protein (ZFP), which are known to be highly expressed in heart tissue biopsies and in the plasma of heart failure patients, are also detectable in the transcripts of blood. Differential expression of zinc finger protein among the normal, diabetic and asymptomatic preclinical subjects may have additional value as a prophylactic “early warning system”. On a related note, there is now more attention/discussion in the cardiovascular disease field being focused on Syndrome X, loosely defined as a continuum of hypertension, increasing sugar levels, diabetes, kidney failure, culminating in heart failure, with the possibility of stroke and heart attack at any time in the continuum. The early identification of patients at risk of organ failure has been a challenge to the medical community for some time and the present method has the potential of resolving or, at least, ameliorating this challenge.

The present invention demonstrates that a simple drop of blood may be used to determine the quantitative expression of various mRNAs that reflect the health/disease state of the subject through the use of RT-PCR analysis. This entire process takes about three hours or less. The single drop of blood may also be used for multiple RT-PCR analyses. There is no need for large samples and/or costly and time-consuming separation of cell types within the blood for this method as compared to the methods described by Kimoto (1998) and Chelly et al. (1989; 1988). It is believed that the present finding can potentially revolutionize the way that diseases are detected, diagnosed and monitored because it provides a non-invasive, simple, highly sensitive and quick screening for tissue-specific transcripts. The transcripts detected in whole blood have potential as prognostic or diagnostic markers of disease, as they reflect disturbances in homeostasis in the human body. Delineation of the sequences and/or quantitation of the expression levels of these marker genes by RT-PCR will allow for an immediate and accurate diagnostic/prognostic test for disease or to assess the efficacy and monitor a particular therapeutic.

In addition to RT-PCR, other methods of amplifying may also be used for the purpose of measuring/quantitating tissue-specific transcripts in human blood. For example, mass spectrometry may be used to quantify the transcripts (Koster et al., 1996; Fu et al., 1998). The application of presently disclosed method for detecting tissue-specific transcripts in blood does not restrict to subjects undergoing course of therapy or treatment, it may also be used for monitoring a patient for the onset of overt symptoms of a disease. Furthermore, the present method may be used for detecting any gene transcripts in blood. A kit for diagnosing, prognosing or even predicting a disease may be designed using gene-specific primers or probes derived from a whole blood sample for a specific disease and applied directly to a drop of blood. A cDNA library specific for a disease may be generated from whole blood samples and used for diagnosis, prognosis or even predicting a disease.

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Any patents or publications mentioned in this specification are indicative of the levels of those skilled in the art to which the invention pertains. Further, these patents and publications are incorporated by reference herein to the same extent as if each individual publication was specifically and individually indicated to be incorporated by reference.

One skilled in the art will appreciate readily that the present invention is well adapted to carry out the objects and obtain the ends and advantages mentioned, as well as those objects, ends and advantages inherent herein. The present examples, along with the methods, procedures, treatments, molecules, and specific compounds described herein are presently representative of preferred embodiments, are exemplary, and are not intended as limitations on the scope of the invention. Changes therein and other uses will occur to those skilled in the art which are encompassed within the spirit of the invention as defined by the scope of the claims.