Patent application title:

COMPOSITIONS AND METHODS FOR REGULATING PRODUCTION OF A PRECURSOR PROTEIN

Publication number:

US20220170042A1

Publication date:
Application number:

17/105,967

Filed date:

2020-11-27

Abstract:

The present disclosure relates to one or more agents, therapies, treatments, and methods of use of the agents and/or therapies and/or treatments for increasing production of a TLR3 precursor protein. Embodiments of the present disclosure can be used as a therapy or a treatment for a subject that has a condition whereby the subject's immune system is, or is likely to become, dysregulated and where the production of the TLR3 precursor protein may result in an increased production of a functional and bioavailable TLR3 protein product, which may be of therapeutic benefit.

Inventors:

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Classification:

C12N2750/14141 »  CPC further

ssDNA viruses; Details; Parvoviridae; Dependovirus, e.g. adenoassociated viruses Use of virus, viral particle or viral elements as a vector

C12N15/86 »  CPC main

Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor; Recombinant DNA-technology; Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression; Vectors or expression systems specially adapted for eukaryotic hosts for animal cells Viral vectors

C07K14/705 »  CPC further

Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans Receptors; Cell surface antigens; Cell surface determinants

Description

TECHNICAL FIELD

The present disclosure generally relates to compositions and methods for regulating production of a precursor protein. In particular, the present disclosure relates to compositions and methods for regulating production of a precursor protein that can be post-translationally modified to produce a protein of the toll-like receptor family.

BACKGROUND

The mammalian immune system can differentiate between self and foreign matter. A number of cascades of signaling molecules and immune cells are characterized by their ability to recognize foreign matter and to call upon the production and stimulation of effector cells of the immune system to kill, break down, consume, or sheath the foreign matter in order to protect a host.

One mechanism by which the immune system can differentiate between self and foreign matter relates to a class of pattern recognition receptors that can detect molecular patterns that foreign microbes present. These pattern recognition receptors can be present on the phospholipid bilayer of various cell types and these cells can become activated upon a binding event between the pattern recognition receptors and the foreign molecular patterns. Activation of these cells reflects triggering of the innate immune system and the acquired immune system.

It is known that under various conditions the immune system can become dysregulated. A dysregulated immune system can cause further damage to the host, thereby preventing healing. It may also result in a loss of homeostatic controls and/or a chronically stimulated immune system.

SUMMARY

Some embodiments of the present disclosure relate to compositions and methods that upregulate the production of a precursor protein. The precursor protein may be subjected to one or more post-translational modification processes to produce a protein that is a member of the toll-like receptor (TLR) family of proteins. In some embodiments of the present disclosure, the precursor protein is a precursor of TLR3. When the precursor protein is subjected to one or more post-translational modification processes, the TLR3 protein product is bioavailable and functionally equivalent to a TLR3 protein that is produced within a subject without the benefit of the embodiments of this disclosure.

In some embodiments of the present disclosure, the compositions described herein comprise a vector of plasmid deoxyribonucleic acid (DNA) that includes an insert sequence of nucleic acids. The insert sequence encodes for the production of the precursor protein and the insert sequence may also include a backbone sequence of nucleic acids that facilitate introduction of the insert sequence into one or more of a subject's cells. Within the subject's cells, the insert sequence is expressed and/or replicated. Expression of the insert sequence by one or more cells of the subject results in an increased production of the precursor protein. In some embodiments of the present disclosure, the methods that upregulate the production of precursor protein relate to methods of manufacturing and administering the composition.

Some embodiments of the present disclosure relate to compositions and methods that can be used as a therapy or a treatment for a subject that has a condition whereby the subject's immune system is, or is likely to become, dysregulated.

Some embodiments of the present disclosure relate to a recombinant virus vector (RVV). The RVV comprises a nucleotide sequence encoding production of the precursor protein and an inverted terminal repeat.

Some embodiments of the present disclosure relate to a composition that comprises a nucleotide sequence according to the present disclosure (SEQ ID No. 3) of which at least a portion can be expressed in a target cell.

Some embodiments of the present disclosure relate to an insert for use with an RVV, wherein the insert has a nucleotide sequence according to SEQ ID 1.

Some embodiments of the present disclosure relate to a method of making an agent/target cell complex, the method comprising a step of administering a therapeutically effective amount of the agent to a subject, wherein the agent/target cell complex increases the subject's production of the precursor protein.

Some embodiments of the present disclosure relate to a pharmaceutical agent that comprises an agent, a pharmaceutically acceptable carrier and/or an excipient. Administering the pharmaceutical agent to a subject may increase the subject's production of the precursor protein.

Some embodiments of the present disclosure relate to a method of treating a condition. The method comprises a step of administering to a subject a therapeutically effective amount of an agent that upregulates the subject's production of the precursor protein.

Some embodiments of the present disclosure relate to a use of an agent for treating a condition, wherein the agent upregulates the subject's production of the precursor protein.

Embodiments of the present disclosure relate to at least one approach for inducing endogenous production of the precursor protein. A first approach utilizes one or more gene vectors containing nucleotide sequences for increasing the endogenous production of the precursor protein. The one or more vectors can be administered to a subject to increase the subject's production of the precursor protein.

Without being bound by any particular theory, the one or more vectors may be expressed in cells of the subject that already have the capability to produce, and do or may have produced, the precursor protein. These cells are referred to herein as capable cells. Therefore, the administration of the one or more vectors may increase the production of the precursor protein within those capable cells. The one or more vectors may also be expressed in other cells of the subject that do not produce the precursor protein when the subject is in a homeostatic state, an infection state or a disease state. These cells are not capable of producing the precursor protein without the one or more vectors of the present disclosure being expressed therein and, therefore, these cells may be referred to herein as incapable cells. The administration of the one or more vectors may induce the incapable cells to start producing the precursor protein.

The precursor protein can be subjected to one or more post-translational modification processes, which results in subject cells that are producing the precursor protein to produce a final protein-product that is bioavailable and functional. In some embodiments of the present disclosure, the protein product may be a receptor protein that is capable of participating in a binding event with a ligand. When a binding event occurs, the receptor protein may initiate one or more changes in the internal cell-signaling and metabolism of the subject cells. In some embodiments of the present disclosure, the protein product is a membrane-bound receptor protein. In the case of capable cells, the one or more vectors of the present disclosure may cause the capable cells to be more sensitive to ligands by increasing the number of membrane-bound receptors that can participate in binding events. In the case of incapable cells, the one or more vectors may cause incapable cells to become able to participating in binding events with ligands. In other words, the embodiments of the present disclosure may cause incapable cells to become responsive to a ligand that binds to the membrane-bound receptor product.

In some embodiments of the present disclosure, the membrane-bound receptor protein is a member of the toll-like receptor (TLR) family. Without being bound to any particular theory, the embodiments of the present disclosure may cause capable cells to increase their participation in the innate immune system, the acquired immune system; binding events with other TLR ligands or combinations thereof. Furthermore, incapable cells that produce the precursor protein due to the one or more vectors of the present disclosure, may now be able to participate in binding events with TLR ligands whereas such binding events would not otherwise occur.

Without being bound by any particular theory, TLR3 is a known component of the innate and acquired immune systems. TLR3 participates in activating immune cells upon a binding event with foreign matter due to the ability of TLR3 to recognize patterns that foreign matter present. Furthermore, pharmaceutical agents may also participate in binding events with TLR3 and these pharmaceutical TLR3 agonists may increase the efficacy of other chemotherapies for cancer, such as inhibitors of checkpoint proteins. For example, increased expression and/or functionality of TLR3 may increase the activity of polyIC, a synthetic double stranded RNA. Without being bound by ant particular theory, the embodiments of the present disclosure may ultimately increase the amount of TLR3 expressed and functioning in a subject and that subject may then further benefit from treatment with other oncolytic viruses, as compared to treatment with oncolytic viruses alone.

DETAILED DESCRIPTION

Unless defined otherwise, all technical and scientific terms used herein have the meanings that would be commonly understood by one of skill in the art in the context of the present description. Although any methods and materials similar or equivalent to those described herein can also be used in the practice or testing of the present disclosure, the preferred methods and materials are now described. All publications mentioned herein are incorporated herein by reference to disclose and describe the methods and/or materials in connection with which the publications are cited.

As used herein, the singular forms ā€œaā€, ā€œanā€, and ā€œtheā€ include plural references unless the context clearly dictates otherwise. For example, reference to ā€œan agentā€ includes one or more agents and reference to ā€œa subjectā€ or ā€œthe subjectā€ includes one or more subjects.

As used herein, the terms ā€œaboutā€ or ā€œapproximatelyā€ refer to within about 25%, preferably within about 20%, preferably within about 15%, preferably within about 10%, preferably within about 5% of a given value or range. It is understood that such a variation is always included in any given value provided herein, whether or not it is specifically referred to.

As used herein, the term ā€œactivityā€ is used interchangeably with the term ā€œfunctionalityā€ and both terms refer to the physiologic action of biomolecule.

As used herein, the term ā€œagentā€ refers to a substance that, when administered to a subject, causes one or more chemical reactions and/or one or more physical reactions and/or or one or more physiological reactions and/or one or more immunological reactions in the subject. In some embodiments of the present disclosure, the agent is a plasmid vector.

As used herein, the term ā€œameliorateā€ refers to improve and/or to make better and/or to make more satisfactory.

As used herein, the term ā€œbiomoleculeā€ refers to a carbohydrate, a protein, an amino acid sequence, a nucleic acid, a lipid, a primary metabolite, a secondary metabolite or another metabolite that is found within a subject. A biomolecule may be endogenous or exogenous to a subject.

As used herein, the term ā€œcellā€ refers to a single cell as well as a plurality of cells or a population of the same cell type or different cell types. Administering an agent to a cell includes in vivo, in vitro and ex vivo administrations and/or combinations thereof.

As used herein, the term ā€œcomplexā€ refers to an association, either direct or indirect, between one or more particles of an agent and one or more target cells. This association results in a change in the metabolism of the target cell. As used herein, the phrase ā€œchange in metabolismā€ refers to an increase or a decrease in the one or more target cells' production of deoxyribonucleic acid (DNA), ribonucleic acid (RNA), one or more proteins, and/or any post-translational modifications of one or more proteins.

As used herein, the terms ā€œdysregulationā€ and ā€œdysregulatedā€ refer to situations or conditions wherein homeostatic control systems have been disturbed and/or compromised so that one or more metabolic, physiologic and/or biochemical systems within a subject operate partially or entirely without said homeostatic control systems.

As used herein, the term ā€œeffector moleculeā€ refers to a molecule within a subject that can directly or indirectly regulate the metabolic activity of a target cell by increasing or decreasing the production of DNA, RNA and/or amino-acid sequences and/or by increasing or decreasing any post-translational modifications of one or more proteins.

As used herein, the term ā€œendogenousā€ refers to the production and/or modification of a molecule that originates within a cell of a subject.

As used herein, the term ā€œexcipientā€ refers to any substance, not itself an agent, which may be used as a component within a pharmaceutical composition or a medicament for administration of a therapeutically effective amount of the agent to a subject. Additionally, or alternatively, an excipient may, either alone or in combination with further chemical components, improve the handling and/or storage properties and/or permit or facilitate formation of a dose unit of the agent. Excipients include, but are not limited to, one or more of: a binder, a disintegrant, a diluent, a buffer, a taste enhancer, a solvent, a thickening agent, a gelling agent, a penetration enhancer, a solubilizing agent, a wetting agent, an antioxidant, a preservative, a surface active agent, a lubricant, an emollient, a substance that is added to mask or counteract a disagreeable odor, fragrance or taste, a substance added to improve appearance or texture of the composition and/or a substance that is used to form the pharmaceutical compositions or medicaments. Any such excipients can be used in any dosage forms according to the present disclosure. The foregoing classes of excipients are not meant to be exhaustive but are provided merely to be illustrative of what a person of skill in the art would know and would also recognize that additional types and combinations of excipients may be used to achieve delivery of a therapeutically effective amount of the agent to a subject through one or more routes of administration.

As used herein, the term ā€œexogenousā€ refers to a molecule that is within a subject but that did not originate within the subject.

As used herein, the terms ā€œinhibitā€, ā€œinhibitingā€, and ā€œinhibitionā€ refer to a decrease in activity, response, or other biological parameter of a biologic process, disease, disorder or symptom thereof. This can include but is not limited to the complete ablation of the activity, response, condition, or disease. This may also include, for example, a 10% reduction in the activity, response, condition, or disease as compared to the native or control level. Thus, the reduction can be a 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, or any amount of reduction in between the specifically recited percentages, as compared to native or control levels.

As used herein, the term ā€œmedicamentā€ refers to a medicine and/or pharmaceutical composition that comprises the agent and that can promote recovery from a disease, disorder or symptom thereof and/or that can prevent a disease, disorder or symptom thereof and/or that can inhibit the progression of a disease, disorder, or symptom thereof.

As used herein, the term ā€œpatientā€ refers to a subject that is afflicted with a disease or disorder. The term ā€œpatientā€ includes human and veterinary subjects.

As used herein, the term ā€œpharmaceutical compositionā€ means any composition comprising, but not necessarily limited to, an agent to be administered a subject in need of therapy or treatment of a disease, disorder or symptom thereof. Pharmaceutical compositions may include additives such as pharmaceutically acceptable carriers, pharmaceutically accepted salts, excipients and the like. Pharmaceutical compositions may also additionally include one or more further active ingredients such as antimicrobial agents, anti-inflammatory agents, anesthetics, analgesics, and the like.

As used herein, the term ā€œpharmaceutically acceptable carrierā€ refers to an essentially chemically inert and nontoxic component within a pharmaceutical composition or medicament that does not inhibit the effectiveness and/or safety of the agent. Some examples of pharmaceutically acceptable carriers and their formulations are described in Remington (1995, The Science and Practice of Pharmacy (19th ed.) ed. A. R. Gennaro, Mack Publishing Company, Easton, Pa.), the disclosure of which is incorporated herein by reference. Typically, an appropriate amount of a pharmaceutically acceptable carrier is used in the formulation to render said formulation isotonic. Examples of suitable pharmaceutically acceptable carriers include, but are not limited to: saline solutions, glycerol solutions, ethanol, N-(1(2, 3-dioleyloxy)propyl)-N,N,N-trimethylammonium chloride (DOTMA), dioleolphosphotidylethanolamine (DOPE), and liposomes. Such pharmaceutical compositions contain a therapeutically effective amount of the agent, together with a suitable amount of one or more pharmaceutically acceptable carriers and/or excipients so as to provide a form suitable for proper administration to the subject. The formulation should suit the route of administration. For example, oral administration may require enteric coatings to protect the agent from degrading within portions of the subject's gastrointestinal tract. In another example, injectable routes of administration may be administered in a liposomal formulation to facilitate transport throughout a subject's vascular system and to facilitate delivery across cell membranes of targeted intracellular sites.

As used herein, the phrases ā€œprevention ofā€ and ā€œpreventingā€ refer to avoiding the onset or progression of a disease, disorder, or a symptom thereof.

As used herein, the terms ā€œproductionā€, ā€œproducingā€ and ā€œproduceā€ refer to the synthesis and/or replication of DNA, the transcription of one or more sequences of RNA, the translation of one or more amino acid sequences, the post-translational modifications of an amino-acid sequence, and/or the production of one or more regulatory molecules that can influence the production and/or functionality of an effector molecule or an effector cell. For clarity, ā€œproductionā€ is also be used herein to refer to the functionality of a regulatory molecule, unless the context reasonably indicates otherwise.

As used herein, the terms ā€œpromoteā€, ā€œpromotionā€, and ā€œpromotingā€ refer to an increase in an activity, response, condition, disease process, or other biological parameter. This can include, but is not limited to, the initiation of the activity, response, condition, or disease process. This may also include, for example, a 10% increase in the activity, response, condition, or disease as compared to the native or control level. Thus, the increase in an activity, response, condition, disease, or other biological parameter can be 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, or more, including any amount of increase in between the specifically recited percentages, as compared to native or control levels.

As used herein, the term ā€œprophylactic administrationā€ refers to the administration of any composition to a subject, in the absence of any symptom or indication of a disease or disorder, to prevent the occurrence and/or progression of the disease or disorder within the subject.

As used herein, the terms ā€œsignal moleculeā€, ā€œsignalling moleculeā€ and ā€œregulatory moleculeā€ can be used interchangeably and refer to a molecule that can directly or indirectly affect the production and/or functionality of an effector molecule or effector cell. Signal molecules can be enzymes or other types of biomolecules that can act as a direct ligand on a target cell or they may influence the levels or functionality of a downstream ligand or a receptor for a ligand.

As used herein, the term ā€œsubjectā€ refers to any therapeutic target that receives the agent. The subject can be a vertebrate, for example, a mammal including a human. The term ā€œsubjectā€ does not denote a particular age or sex. The term ā€œsubjectā€ also refers to one or more cells of an organism, an in vitro culture of one or more tissue types, an in vitro culture of one or more cell types, ex vivo preparations, and/or a sample of biological materials such as tissue and/or biological fluids.

As used herein, the term ā€œtarget cellā€ refers to one or more cells and/or cell types that are deleteriously affected, either directly or indirectly, by a dysregulated immune system and/or a disease process. The term ā€œtarget cellā€ also refers to cells that are not deleteriously affected but that are cells in which it is desired that the agent interacts.

As used herein, the term ā€œtherapeutically effective amountā€ refers to the amount of the agent used that is of sufficient quantity to ameliorate, treat and/or inhibit one or more of a disease, disorder or a symptom thereof. The ā€œtherapeutically effective amountā€ will vary depending on the agent used, the route of administration of the agent and the severity of the disease, disorder or symptom thereof. The subject's age, weight and genetic make-up may also influence the amount of the agent that will be a therapeutically effective amount.

As used herein, the terms ā€œtreatā€, ā€œtreatmentā€ and ā€œtreatingā€ refer to obtaining a desired pharmacologic and/or physiologic effect. The effect may be prophylactic in terms of completely or partially preventing an occurrence of a disease, disorder or symptom thereof and/or the effect may be therapeutic in providing a partial or complete amelioration or inhibition of a disease, disorder, or symptom thereof. Additionally, the term ā€œtreatmentā€ refers to any treatment of a disease, disorder, or symptom thereof in a subject and includes: (a) preventing the disease from occurring in a subject which may be predisposed to the disease but has not yet been diagnosed as having it; (b) inhibiting the disease, i.e., arresting its development; and, (c) ameliorating the disease.

As used herein, the terms ā€œunit dosage formā€ and ā€œunit doseā€ refer to a physically discrete unit that is suitable as a unitary dose for patients. Each unit contains a predetermined quantity of the agent and optionally, one or more suitable pharmaceutically acceptable carriers, one or more excipients, one or more additional active ingredients, or combinations thereof. The amount of agent within each unit is a therapeutically effective amount.

In embodiments of the present disclosure, the pharmaceutical compositions disclosed herein comprise an agent as described above in a total amount by weight of the composition of about 0.1% to about 95%. For example, the amount of the agent by weight of the pharmaceutical composition may be about 0.1%, about 0.2%, about 0.3%, about 0.4%, about 0.5%, about 0.6%, about 0.7%, about 0.8%, about 0.9%, about 1%, about 1.1%, about 1.2%, about 1.3%, about 1.4%, about 1.5%, about 1.6%, about 1.7%, about 1.8%, about 1.9%, about 2%, about 2.1%, about 2.2%, about 2.3%, about 2.4%, about 2.5%, about 2.6%, about 2.7%, about 2.8%, about 2.9%, about 3%, about 3.1%, about 3.2%, about 3.3%, about 3.4%, about 3.5%, about 3.6%, about 3.7%, about 3.8%, about 3.9%, about 4%, about 4.1%, about 4.2%, about 4.3%, about 4.4%, about 4.5%, about 4.6%, about 4.7%, about 4.8%. about 4.9%, about 5%, about 5.1%, about 5.2%, about 5.3%, about 5.4%, about 5.5%, about 5.6%, about 5.7%, about 5.8%, about 5.9%, about 6%, about 6.1%, about 6.2%, about 6.3%, about 6.4%, about 6.5%, about 6.6%, about 6.7%, about 6.8%, about 6.9%, about 7%, about 7.1%, about 7.2%, about 7.3%, about 7.4%, about 7.5%, about 7.6%, about 7.7%, about 7.8%, about 7.9%, about 8%, about 8.1%, about 8.2%, about 8.3%, about 8.4%, about 8.5%, about 8.6%, about 8.7%, about 8.8%, about 8.9%, about 9%, about 9.1%, about 9.2%, about 9.3%, about 9.4%, about 9.5%, about 9.6%, about 9.7%, about 9.8%, about 9.9%, about 10%, about 11%, about 12%, about 13%, about 14%, about 15%, about 16%, about 17%, about 18%, about 19%, about 20%, about 25%, about 30%, about 35%, about 40%, about 45%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90% or about 95%.

Where a range of values is provided herein, it is understood that each intervening value, to the tenth of the unit of the lower limit unless the context clearly dictates otherwise, between the upper and lower limit of that range and any other stated or intervening value in that stated range, is encompassed within the disclosure. The upper and lower limits of these smaller ranges may independently be included in the smaller ranges, and are also, encompassed within the disclosure, subject to any specifically excluded limit in the stated range. Where the stated range includes one or both of the limits, ranges excluding either or both of those included limits are also included in the disclosure.

In some embodiments of the present disclosure, an agent is a plasmid vector for introducing into a target cell for reproduction or transcription of an insert that comprises one or more nucleotide sequences that are carried within the plasmid vector. In some embodiments of the present disclosure, the plasmid vector is a viral vector. In some embodiments of the present disclosure, the vector is an adeno-associated virus vector.

In some embodiments of the present disclosure, the insert comprises one or more nucleotide sequences that encode for production of a precursor protein. The precursor protein is substantially similar, or substantially the same, as a translational product of a gene whose expression results in increased production of a protein that can participate in the innate immune system and/or the acquired immune system. In some embodiments of the present disclosure, the precursor protein is susceptible to one or more post-translational modification processes to create a protein product that acts as a membrane-bound receptor protein. The protein product can bind with extra-cellular ligands and initiate one or more intracellular signal pathways that change the metabolism of the associated cell.

In some embodiments of the present disclosure, the precursor protein is substantially similar, or substantially the same, as the translational product of the TLR3 gene. Following one or more post-translational modification processes, the precursor protein is converted into a protein product that has substantially similar, or substantially the same, function as the toll-like receptor 3 (TLR3) protein.

In some embodiments of the present disclosure, the precursor protein is a translational product of a nucleotide sequence that is substantially similar or substantially the same as SEQ ID No. 1, provided herein below.

In some embodiments of the present disclosure, the precursor protein has an amino acid sequence that is substantially similar or substantially the same as SEQ ID No. 2, provided herein below.

Without being bound by any particular theory, the precursor protein can be subjected to one or more post-translational modification processes within a subject's cell so that it is converted into a TLR3 protein product that has the same functionality and bioavailability as a TLR3 protein that a subject would produce without the embodiments of the present disclosure.

The present disclosure relates to one or more agents, therapies, treatments, and methods of use of the agents and/or therapies and/or treatments for initiating or upregulating production of the TLR3 precursor protein. Some embodiments of the present disclosure relate to methods for making a complex between at least one particle of an agent and at least one target cell of a subject for initiating or increasing production of the TLR3 precursor protein. The at least one target cell can be a capable cell or an incapable cell. For clarity, a capable cell is a cell that already has the capability to produce, and do or may have produced, the precursor protein. Therefore, the administration of the one or more vectors may increase the production of the precursor protein within those capable cells. The one or more vectors may also be expressed in an incapable cell. For clarity, an incapable cell is a cell of the subject that does not produce the precursor protein when the subject is in a homeostatic state, an infection state or a disease state. Incapable cells are not capable of producing the precursor protein without the one or more vectors of the present disclosure being expressed therein. The administration of the one or more vectors may induce the incapable cells to start producing the precursor protein. The embodiments of the present disclosure may cause at least a portion of a subject's capable cells and a portion of incapable cells to produce, in aggregate, a greater amount of the precursor protein which may then be subjected to one or more post-translational modification processes to produce a functional and bioavailable TLR3 protein product. As such, the embodiments of the present disclosure can be used as a therapy or a treatment for a subject that has a condition whereby the subject's immune system is, or is likely to become, dysregulated. For example, it is known that administering TLR3 agonists in animal models increases the efficacy of certain checkpoint protein inhibitors. Furthermore, it is known that the tumor cells of certain types of cancers may have dysfunctional TLR3 proteins. As such, the embodiments of the present disclosure may enhance the efficacy of therapies that include the administration of one or more checkpoint protein inhibitors, such as therapies that are directed at treating various types of cancer. Furthermore, the embodiments of the present disclosure may also increase the population of functional TLR3 protein products that are present on the surface of the subject's cells, including tumor cells. This may increase the efficacy of chemotherapy agents that acts as ligands for TLR3, such as those chemotherapy agents that may mimic or form segments of double stranded RNA.

In some embodiments of the present disclosure, the agent can be administered to the subject by an intravenous route, an intramuscular route, an intraperitoneal route, an intrathecal route, an intravesical route, a topical route, an intranasal route, a transmucosal route, a pulmonary route, and combinations thereof.

In some embodiments of the present disclosure, the agent can be administered to the subject by pipetting a dose of the agent into an in vitro cell culture, perfusing or immersing an ex vivo cell or tissue preparation with a solution that comprises the agent, mixing a biological fluid sample with a solution or substrate that comprises the agent, or combinations thereof.

Some embodiments of the present disclosure relate to an agent that can be administered to a subject with a condition that could benefit from an increased production of a TLR3 precursor protein that can be modified into a functional TLR3 protein. When a therapeutically effective amount of the agent is administered to the subject, the capable and incapable cells of the subject may increase the translational production of the TLR3 precursor protein, which then may be modified into functional and bioavailable TLR3 membrane-associated receptor protein.

In some embodiments of the present disclosure, administering a therapeutic amount of the agent to a subject upregulates the production, functionality or both of a TLR3 protein product by increasing the translational production of the precursor protein.

In some embodiments of the present disclosure, the agent is a vector used for gene therapy. The gene therapy is useful for increasing the subject's endogenous production of the TLR3 precursor protein. For example, the vector can contain one or more nucleotide sequences that that cause increased production of the precursor protein in both capable cells and incapable cells in which the vector is expressed.

In some embodiments of the present disclosure, the vector used for gene therapy is a virus that can be enveloped or not, replication effective or not, or combinations thereof. In some embodiments of the present disclosure, the vector is a virus that is not enveloped and not replication effective. In some embodiments of the present disclosure, the vector is a virus of the Paroviridae family. In some embodiments of the present disclosure, the vector is a virus of the genus Dependoparvaovirus. In some embodiments of the present disclosure, the vector is an adeno-associated virus (AAV). In some embodiments of the present disclosure, the vector is a recombinant AAV.

The embodiments of the present disclosure also relate to administering a therapeutically effective amount of the agent. In some embodiments of the present disclosure, the therapeutically effective amount of the agent that is administered to a patient is between about 10 and about 1Ɨ1016 TCID50/kg (50% tissue culture infective dose per kilogram of the patient's body weight). In some embodiments of the present disclosure, the therapeutically effective amount of the agent that is administered to the patient is about 1Ɨ1013 TCID50/kg. In some embodiments of the present disclosure, the therapeutically effective amount of the agent that is administered to a patient is measured in TPC/kg (total particle count of the agent per kilogram of the patient's body weight). In some embodiments the therapeutically effective amount of the agent is between about 10 and about 1Ɨ1016 TCP/kg.

Some embodiments of the present disclosure relate to a method for making a complex within a subject. The method comprises a step of administering a therapeutically effective amount of the agent to the subject. The complex comprises at least one particle of agent and one or more target cells. When the complex is formed, it affects a change in metabolism of the one or more target cells, which results in the target cells upregulating the production of the TLR3 precursor protein. Examples of a target cell include both capable cells and incapable cells, such as but not limited to: an innate immune cell, an acquired immune cell, an adrenal gland cell; a bile duct cell; a chondrocyte; a cochlear cell; a corneal cell; an endocardium cell; an endometrial cell; an endothelial cell; an epithelial cell; a fibroblast; a hair follicle cell; a hepatocyte; a lymph node cell; a mucosal cell; a myocyte; a neuron; a glomeruli cell; an optic nerve cell; an osteoblast; an ovarian tissue cell; a pancreatic islet beta cell; a pericardium cell; a platelet; a red blood cell (RBC); a retinal cell; a scleral cell; a Schwann cell; a T cell; a testicular tissue cell; a thyroid gland cell; a uveal cell; a tumor cell, or combinations thereof.

Some embodiments of the present disclosure relate to a therapy, or method of treating a condition, that can be administered to a subject with the condition. The therapy comprises a step of administering to the subject a therapeutically effective amount of an agent that will upregulate the subject's production of the TLR3 precursor protein. The increased production of the TLR3 precursor protein may result in increased levels of functional and bioavailable TLR3 protein product, which may reduce deleterious effects of the condition upon the subject.

Below are examples of nucleotide sequences of each may be present in the insert. As will be appreciated by those skilled in the art, minor modifications, substitutions or replacements of a select few nucleotides or amino acids in the sequences provided below will not substantially impact the physiologic or biologic effect of such modified sequences, as compared to the sequences provided herein below. Any such modified sequences are also contemplated by the present disclosure.

(nucleotideā€ƒsequenceā€ƒforā€ƒtranscriptionā€ƒofā€ƒprecursorā€ƒprotein)
SEQā€ƒIDā€ƒNo.ā€ƒ1
atgcgccagaā€ƒccctgccgtgā€ƒcatttattttā€ƒtggggcggccā€ƒtgctgccgttā€ƒtggcatgctg 60
tgcgcgagcaā€ƒgcaccaccaaā€ƒatgcaccgtgā€ƒagccatgaagā€ƒtggcggattgā€ƒcagccatctg 120
aaactgacccā€ƒaggtgccggaā€ƒtgatctgccgā€ƒaccaacattaā€ƒccgtgctgaaā€ƒcctgacccat 180
aaccagctgcā€ƒgccgcctgccā€ƒggcggcgaacā€ƒtttacccgctā€ƒatagccagctā€ƒgaccagcctg 240
gatgtgggctā€ƒttaacaccatā€ƒtagcaaactgā€ƒgaaccggaacā€ƒtgtgccagaaā€ƒactgccgatg 300
ctgaaagtgcā€ƒtgaacctgcaā€ƒgcataacgaaā€ƒctgagccagcā€ƒtgagcgataaā€ƒaacctttgcg 360
ttttgcaccaā€ƒacctgaccgaā€ƒactgcatctgā€ƒatgagcaacaā€ƒgcattcagaaā€ƒaattaaaaac 420
aacccgtttgā€ƒtgaaacagaaā€ƒaaacctgattā€ƒaccctggatcā€ƒtgagccataaā€ƒcggcctgagc 480
agcaccaaacā€ƒtgggcacccaā€ƒggtgcagctgā€ƒgaaaacctgcā€ƒaggaactgctā€ƒgctgagcaac 540
aacaaaattcā€ƒaggcgctgaaā€ƒaagcgaagaaā€ƒctggatatttā€ƒttgcgaacagā€ƒcagcctgaaa 600
aaactggaacā€ƒtgagcagcaaā€ƒccagattaaaā€ƒgaatttagccā€ƒcgggctgcttā€ƒtcatgcgatt 660
ggccgcctgtā€ƒttggcctgttā€ƒtctgaacaacā€ƒgtgcagctggā€ƒgcccgagcctā€ƒgaccgaaaaa 720
ctgtgcctggā€ƒaactggcgaaā€ƒcaccagcattā€ƒcgcaacctgaā€ƒgcctgagcaaā€ƒcagccagctg 780
agcaccaccaā€ƒgcaacaccacā€ƒctttctgggcā€ƒctgaaatggaā€ƒccaacctgacā€ƒcatgctggat 840
ctgagctataā€ƒacaacctgaaā€ƒcgtggtgggcā€ƒaacgatagctā€ƒttgcgtggctā€ƒgccgcagctg 900
gaatatttttā€ƒttctggaataā€ƒtaacaacattā€ƒcagcatctgtā€ƒttagccatagā€ƒcctgcatggc 960
ctgtttaacgā€ƒtgcgctatctā€ƒgaacctgaaaā€ƒcgcagctttaā€ƒccaaacagagā€ƒcattagcctg 1020
gcgagcctgcā€ƒcgaaaattgaā€ƒtgattttagcā€ƒtttcagtggcā€ƒtgaaatgcctā€ƒggaacatctg 1080
aacatggaagā€ƒataacgatatā€ƒtccgggcattā€ƒaaaagcaacaā€ƒtgtttaccggā€ƒcctgattaac 1140
ctgaaatatcā€ƒtgagcctgagā€ƒcaacagctttā€ƒaccagcctgcā€ƒgcaccctgacā€ƒcaacgaaacc 1200
tttgtgagccā€ƒtggcgcatagā€ƒcccgctgcatā€ƒattctgaaccā€ƒtgaccaaaaaā€ƒcaaaattagc 1260
aaaattgaaaā€ƒgcgatgcgttā€ƒtagctggctgā€ƒggccatctggā€ƒaagtgctggaā€ƒtctgggcctg 1320
aacgaaattgā€ƒgccaggaactā€ƒgaccggccagā€ƒgaatggcgcgā€ƒgcctggaaaaā€ƒcatttttgaa 1380
atttatctgaā€ƒgctataacaaā€ƒatatctgcagā€ƒctgacccgcaā€ƒacagctttgcā€ƒgctggtgccg 1440
agcctgcagcā€ƒgcctgatgctā€ƒgcgccgcgtgā€ƒgcgctgaaaaā€ƒacgtggatagā€ƒcagcccgagc 1500
ccgtttcagcā€ƒcgctgcgcaaā€ƒcctgaccattā€ƒctggatctgaā€ƒgcaacaacaaā€ƒcattgcgaac 1560
attaacgatgā€ƒatatgctggaā€ƒaggcctggaaā€ƒaaactggaaaā€ƒttctggatctā€ƒgcagcataac 1620
aacctggcgcā€ƒgcctgtggaaā€ƒacatgcgaacā€ƒccgggcggccā€ƒcgatttatttā€ƒtctgaaaggc 1680
ctgagccatcā€ƒtgcatattctā€ƒgaacctggaaā€ƒagcaacggctā€ƒttgatgaaatā€ƒtccggtggaa 1740
gtgtttaaagā€ƒatctgtttgaā€ƒactgaaaattā€ƒattgatctggā€ƒgcctgaacaaā€ƒcctgaacacc 1800
ctgccggcgaā€ƒgcgtgtttaaā€ƒcaaccaggtgā€ƒagcctgaaaaā€ƒgcctgaacctā€ƒgcagaaaaac 1860
ctgattaccaā€ƒgcgtggaaaaā€ƒaaaagtgtttā€ƒggcccggcgtā€ƒttcgcaacctā€ƒgaccgaactg 1920
gatatgcgctā€ƒttaacccgttā€ƒtgattgcaccā€ƒtgcgaaagcaā€ƒttgcgtggttā€ƒtgtgaactgg 1980
attaacgaaaā€ƒcccataccaaā€ƒcattccggaaā€ƒctgagcagccā€ƒattatctgtgā€ƒcaacaccccg 2040
ccgcattatcā€ƒatggctttccā€ƒggtgcgcctgā€ƒtttgataccaā€ƒgcagctgcaaā€ƒagatagcgcg 2100
ccgtttgaacā€ƒtgttttttatā€ƒgattaacaccā€ƒagcattctgcā€ƒtgatttttatā€ƒttttattgtg 2160
ctgctgattcā€ƒattttgaaggā€ƒctggcgcattā€ƒagcttttattā€ƒggaacgtgagā€ƒcgtgcatcgc 2220
gtgctgggctā€ƒttaaagaaatā€ƒtgatcgccagā€ƒaccgaacagtā€ƒttgaatatgcā€ƒggcgtatatt 2280
attcatgcgtā€ƒataaagataaā€ƒagattgggtgā€ƒtgggaacattā€ƒttagcagcatā€ƒggaaaaagaa 2340
gatcagagccā€ƒtgaaattttgā€ƒcctggaagaaā€ƒcgcgattttgā€ƒaagcgggcgtā€ƒgtttgaactg 2400
gaagcgattgā€ƒtgaacagcatā€ƒtaaacgcagcā€ƒcgcaaaattaā€ƒtttttgtgatā€ƒtacccatcat 2460
ctgctgaaagā€ƒatccgctgtgā€ƒcaaacgctttā€ƒaaagtgcatcā€ƒatgcggtgcaā€ƒgcaggcgatt 2520
gaacagaaccā€ƒtggatagcatā€ƒtattctggtgā€ƒtttctggaagā€ƒaaattccggaā€ƒttataaactg 2580
aaccatgcgcā€ƒtgtgcctgcgā€ƒccgcggcatgā€ƒtttaaaagccā€ƒattgcattctā€ƒgaactggccg 2640
gtgcagaaagā€ƒaacgcattggā€ƒcgcgtttcgcā€ƒcataaactgcā€ƒaggtggcgctā€ƒgggcagcaaa 2700
aacagcgtgcā€ƒattaa 2715
(aminoā€ƒacidā€ƒsequenceā€ƒforā€ƒTRL3ā€ƒprecursorā€ƒprotein)
SEQā€ƒIDā€ƒNo.ā€ƒ2
MRQTLPCIYFWGGLLPFGMLCASSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTH
NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA
FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN
NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK
LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL
EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL
NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS
KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP
SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN
NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT
LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLIELDMRFNPFDCTCESIAWFVNW
INETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAPFELFFMINTSILLIFIFIV
LLIHFEGWRISFYWNVSVHRVLGFKEIDRQIhQFEYAAYIIHAYKDKDWVWEHFSSMEKE
DQSLKFCLEERDFEAGVFELEAIVNSIKRSRKIIFVITHHLLKDPLCKRFKVHHAVQQAI
EQNLDSIILVFLEEIPDYKLNHALCLRRGMFKSHCILNWPVQKERIGAFRHKLQVALGSK
NSVH
(nucleotideā€ƒsequenceā€ƒforā€ƒplasmidā€ƒvector)
SEQā€ƒIDā€ƒNo.ā€ƒ3
cagcagctgcā€ƒgcgctcgctcā€ƒgctcactgagā€ƒgccgcccgggā€ƒcaaagcccggā€ƒgcgtcgggcg 60
acctttggtcā€ƒgcccggcctcā€ƒagtgagcgagā€ƒcgagcgcgcaā€ƒgagagggagtā€ƒggccaactcc 120
atcactagggā€ƒgttccttgtaā€ƒgttaatgattā€ƒaacccgccatā€ƒgctacttatcā€ƒtacgtagcca 180
tgctctaggaā€ƒcattgattatā€ƒtgactagtggā€ƒagttccgcgtā€ƒtacataacttā€ƒacggtaaatg 240
gcccgcctggā€ƒctgaccgcccā€ƒaacgacccccā€ƒgcccattgacā€ƒgtcaataatgā€ƒacgtatgttc 300
ccatagtaacā€ƒgccaatagggā€ƒactttccattā€ƒgacgtcaatgā€ƒggtggagtatā€ƒttacggtaaa 360
ctgcccacttā€ƒggcagtacatā€ƒcaagtgtatcā€ƒatatgccaagā€ƒtacgccccctā€ƒattgacgtca 420
atgacggtaaā€ƒatggcccgccā€ƒtggcattatgā€ƒcccagtacatā€ƒgaccttatggā€ƒgactttccta 480
cttggcagtaā€ƒcatctacgtaā€ƒttagtcatcgā€ƒctattaccatā€ƒggtcgaggtgā€ƒagccccacgt 540
tctgcttcacā€ƒtctccccatcā€ƒtcccccccctā€ƒccccacccccā€ƒaattttgtatā€ƒttatttattt 600
tttaattattā€ƒttgtgcagcgā€ƒatgggggcggā€ƒggggggggggā€ƒgggcgcgcgcā€ƒcaggcggggc 660
ggggcggggcā€ƒgaggggcgggā€ƒgcggggcgagā€ƒgcggagaggtā€ƒgcggcggcagā€ƒccaatcagag 720
cggcgcgctcā€ƒcgaaagtttcā€ƒcttttatggcā€ƒgaggcggcggā€ƒcggcggcggcā€ƒcctataaaaa 780
gcgaagcgcgā€ƒcggcgggcggā€ƒgagtcgctgcā€ƒgcgctgccttā€ƒcgccccgtgcā€ƒcccgctccgc 840
cgccgcctcgā€ƒcgccgcccgcā€ƒcccggctctgā€ƒactgaccgcgā€ƒttactaaaacā€ƒaggtaagtcc 900
ggcctccgcgā€ƒccgggttttgā€ƒgcgcctcccgā€ƒcgggcgccccā€ƒcctcctcacgā€ƒgcgagcgctg 960
ccacgtcagaā€ƒcgaagggcgcā€ƒagcgagcgtcā€ƒctgatccttcā€ƒcgcccggacgā€ƒctcaggacag 1020
cggcccgctgā€ƒctcataagacā€ƒtcggccttagā€ƒaaccccagtaā€ƒtcagcagaagā€ƒgacattttag 1080
gacgggacttā€ƒgggtgactctā€ƒagggcactggā€ƒttttctttccā€ƒagagagcggaā€ƒacaggcgagg 1140
aaaagtagtcā€ƒccttctcggcā€ƒgattctgcggā€ƒagggatctccā€ƒgtggggcggtā€ƒgaacgccgat 1200
gatgcctctaā€ƒctaaccatgtā€ƒtcatgttttcā€ƒtttttttttcā€ƒtacaggtcctā€ƒgggtgacgaa 1260
cagggtaccgā€ƒccaccatggtā€ƒgtccaagggaā€ƒgaggagctgtā€ƒtcaccggagtā€ƒggtgcccatc 1320
ctggtggagcā€ƒtggacggcgaā€ƒtgtgaatggcā€ƒcacaagtttaā€ƒgcgtgtccggā€ƒagagggagag 1380
ggcgacgcaaā€ƒcctacggcaaā€ƒgctgacactgā€ƒaagttcatctā€ƒgcaccacaggā€ƒcaagctgccc 1440
gtgccttggcā€ƒcaaccctggtā€ƒgaccacactgā€ƒacatacggcgā€ƒtgcagtgtttā€ƒttctcggtat 1500
ccagaccacaā€ƒtgaagcagcaā€ƒcgatttctttā€ƒaagagcgccaā€ƒtgcccgagggā€ƒctacgtgcag 1560
gagaggacaaā€ƒtcttctttaaā€ƒggacgatggcā€ƒaactataagaā€ƒccagagccgaā€ƒggtgaagttc 1620
gagggcgacaā€ƒcactggtgaaā€ƒccggatcgagā€ƒctgaagggcaā€ƒtcgactttaaā€ƒggaggatggc 1680
aatatcctggā€ƒgccacaagctā€ƒggagtacaacā€ƒtataattcccā€ƒacaacgtgtaā€ƒcatcatggcc 1740
gataagcagaā€ƒagaacggcatā€ƒcaaggtgaacā€ƒttcaagatccā€ƒgccacaatatā€ƒcgaggacggc 1800
tctgtgcagcā€ƒtggccgatcaā€ƒctaccagcagā€ƒaacacccctaā€ƒtcggcgacggā€ƒacccgtgctg 1860
ctgcctgataā€ƒatcactatctā€ƒgtctacacagā€ƒagcgccctgtā€ƒccaaggacccā€ƒaaacgagaag 1920
agggatcacaā€ƒtggtgctgctā€ƒggagttcgtgā€ƒaccgcagcagā€ƒgcatcacactā€ƒgggcatggat 1980
gagctgtataā€ƒagcgaaaaagā€ƒaagatcaggtā€ƒtcgggtgcgcā€ƒcagtaaagcaā€ƒgacattaaac 2040
tttgatttgcā€ƒtgaaacttgcā€ƒaggtgatgtaā€ƒgagtcaaatcā€ƒcaggtccaggā€ƒatccatgcgc 2100
cagaccctgcā€ƒcgtgcatttaā€ƒtttttggggcā€ƒggcctgctgcā€ƒcgtttggcatā€ƒgctgtgcgcg 2160
agcagcaccaā€ƒccaaatgcacā€ƒcgtgagccatā€ƒgaagtggcggā€ƒattgcagccaā€ƒtctgaaactg 2220
acccaggtgcā€ƒcggatgatctā€ƒgccgaccaacā€ƒattaccgtgcā€ƒtgaacctgacā€ƒccataaccag 2280
ctgcgccgccā€ƒtgccggcggcā€ƒgaactttaccā€ƒcgctatagccā€ƒagctgaccagā€ƒcctggatgtg 2340
ggctttaacaā€ƒccattagcaaā€ƒactggaaccgā€ƒgaactgtgccā€ƒagaaactgccā€ƒgatgctgaaa 2400
gtgctgaaccā€ƒtgcagcataaā€ƒcgaactgagcā€ƒcagctgagcgā€ƒataaaaccttā€ƒtgcgttttgc 2460
accaacctgaā€ƒccgaactgcaā€ƒtctgatgagcā€ƒaacagcattcā€ƒagaaaattaaā€ƒaaacaacccg 2520
tttgtgaaacā€ƒagaaaaacctā€ƒgattaccctgā€ƒgatctgagccā€ƒataacggcctā€ƒgagcagcacc 2580
aaactgggcaā€ƒcccaggtgcaā€ƒgctggaaaacā€ƒctgcaggaacā€ƒtgctgctgagā€ƒcaacaacaaa 2640
attcaggcgcā€ƒtgaaaagcgaā€ƒagaactggatā€ƒatttttgcgaā€ƒacagcagcctā€ƒgaaaaaactg 2700
gaactgagcaā€ƒgcaaccagatā€ƒtaaagaatttā€ƒagcccgggctā€ƒgctttcatgcā€ƒgattggccgc 2760
ctgtttggccā€ƒtgtttctgaaā€ƒcaacgtgcagā€ƒctgggcccgaā€ƒgcctgaccgaā€ƒaaaactgtgc 2820
ctggaactggā€ƒcgaacaccagā€ƒcattcgcaacā€ƒctgagcctgaā€ƒgcaacagccaā€ƒgctgagcacc 2880
accagcaacaā€ƒccacctttctā€ƒgggcctgaaaā€ƒtggaccaaccā€ƒtgaccatgctā€ƒggatctgagc 2940
tataacaaccā€ƒtgaacgtggtā€ƒgggcaacgatā€ƒagctttgcgtā€ƒggctgccgcaā€ƒgctggaatat 3000
ttttttctggā€ƒaatataacaaā€ƒcattcagcatā€ƒctgtttagccā€ƒatagcctgcaā€ƒtggcctgttt 3060
aacgtgcgctā€ƒatctgaacctā€ƒgaaacgcagcā€ƒtttaccaaacā€ƒagagcattagā€ƒcctggcgagc 3120
ctgccgaaaaā€ƒttgatgatttā€ƒtagctttcagā€ƒtggctgaaatā€ƒgcctggaacaā€ƒtctgaacatg 3180
gaagataacgā€ƒatattccgggā€ƒcattaaaagcā€ƒaacatgtttaā€ƒccggcctgatā€ƒtaacctgaaa 3240
tatctgagccā€ƒtgagcaacagā€ƒctttaccagcā€ƒctgcgcacccā€ƒtgaccaacgaā€ƒaacctttgtg 3300
agcctggcgcā€ƒatagcccgctā€ƒgcatattctgā€ƒaacctgaccaā€ƒaaaacaaaatā€ƒtagcaaaatt 3360
gaaagcgatgā€ƒcgtttagctgā€ƒgctgggccatā€ƒctggaagtgcā€ƒtggatctgggā€ƒcctgaacgaa 3420
attggccaggā€ƒaactgaccggā€ƒccaggaatggā€ƒcgcggcctggā€ƒaaaacattttā€ƒtgaaatttat 3480
ctgagctataā€ƒacaaatatctā€ƒgcagctgaccā€ƒcgcaacagctā€ƒttgcgctggtā€ƒgccgagcctg 3540
cagcgcctgaā€ƒtgctgcgccgā€ƒcgtggcgctgā€ƒaaaaacgtggā€ƒatagcagcccā€ƒgagcccgttt 3600
cagccgctgcā€ƒgcaacctgacā€ƒcattctggatā€ƒctgagcaacaā€ƒacaacattgcā€ƒgaacattaac 3660
gatgatatgcā€ƒtggaaggcctā€ƒggaaaaactgā€ƒgaaattctggā€ƒatctgcagcaā€ƒtaacaacctg 3720
gcgcgcctgtā€ƒggaaacatgcā€ƒgaacccgggcā€ƒggcccgatttā€ƒattttctgaaā€ƒaggcctgagc 3780
catctgcataā€ƒttctgaacctā€ƒggaaagcaacā€ƒggctttgagaā€ƒaattccggtgā€ƒgaagtgttta 3840
aagatctgttā€ƒtgaactgaaaā€ƒattattgatcā€ƒtgggcctgaaā€ƒcaacctgaacā€ƒaccctgccgg 3900
gagcgtgtttā€ƒaacaaccaggā€ƒtgagcctgaaā€ƒaagcctgaacā€ƒctgcagaaaaā€ƒacctgattac 3960
cagcgtggaaā€ƒaaaaaagtgtā€ƒttggcccggcā€ƒgtttcgcaacā€ƒctgaccgaacā€ƒtggatatgcg 4020
ctttaacccgā€ƒtttgattgcaā€ƒcctgcgaaagā€ƒcattgcgtggā€ƒtttgtgaactā€ƒggattaacga 4080
aacccataccā€ƒaacattccggā€ƒaactgagcagā€ƒccattatctgā€ƒtgcaacacccā€ƒcgccgcatta 4140
tcatggctttā€ƒccggtgcgccā€ƒtgtttgatacā€ƒcagcagctgcā€ƒaaagatagcgā€ƒcgccgtttga 4200
actgttttttā€ƒatgattaacaā€ƒccagcattctā€ƒgctgatttttā€ƒatttttattgā€ƒtgctgctgat 4260
tcattttgaaā€ƒggctggcgcaā€ƒttagcttttaā€ƒttggaacgtgā€ƒagcgtgcatcā€ƒgcgtgctggg 4320
ctttaaagaaā€ƒattgatcgccā€ƒagaccgaacaā€ƒgtttgaatatā€ƒgcggcgtataā€ƒttattcatgc 4380
gtataaagatā€ƒaaagattgggā€ƒtgtgggaacaā€ƒttttagcagcā€ƒatggaaaaagā€ƒaagatcagag 4440
cctgaaatttā€ƒtgcctggaagā€ƒaacgcgatttā€ƒtgaagcgggcā€ƒgtgtttgaacā€ƒtggaagcgat 4500
tgtgaacagcā€ƒattaaacgcaā€ƒgccgcaaaatā€ƒtatttttgtgā€ƒattacccatcā€ƒatctgctgaa 4560
agatcgctgtā€ƒgcaaacgcttā€ƒtaaagtgcatā€ƒcatgcggtgcā€ƒagcaggcgatā€ƒtgaacagaac 4620
ctggatagcaā€ƒttattctggtā€ƒgtttctggaaā€ƒgaaattccggā€ƒattataaactā€ƒgaaccatgcg 4680
ctgtgcctgcā€ƒgccgcggcatā€ƒgtttaaaagcā€ƒcattgcattcā€ƒtgaactggccā€ƒggtgcagaaa 4740
gaacgcattgā€ƒgcgcgtttcgā€ƒccataaactgā€ƒcaggtggcgcā€ƒtgggcagcaaā€ƒaaacagcgtg 4800
cattaataccā€ƒcctatgacgtā€ƒgcctgattatā€ƒgcctgactctā€ƒagaataatcaā€ƒacctctggat 4860
tacaaaatttā€ƒgtgaaagattā€ƒgactggtattā€ƒcttaactatgā€ƒttgctcctttā€ƒtacgctatgt 4920
ggatacgctgā€ƒctttaatgccā€ƒtttgtatcatā€ƒgctattgcttā€ƒcccgtatggcā€ƒtttcattttc 4980
tcctccttgtā€ƒataaatcctgā€ƒgttgctgtctā€ƒctttatgaggā€ƒagttgtggccā€ƒcgttgtcagg 5040
caacgtggcgā€ƒtggtgtgcacā€ƒtgtgtttgctā€ƒgacgcaacccā€ƒccactggttgā€ƒgggcattgcc 5100
accacctgtcā€ƒagctcctttcā€ƒcgggactttcā€ƒgctttcccccā€ƒtccctattgcā€ƒcacggcggaa 5160
ctcatcgccgā€ƒcctgccttgcā€ƒccgctgctggā€ƒacaggggctcā€ƒggctgttgggā€ƒcactgacaat 5220
tccgtggtgtā€ƒtgtcggggaaā€ƒatcatcgtccā€ƒtttccttggcā€ƒtgctcgcctgā€ƒtgttgccacc 5280
tggattctgcā€ƒgcgggacgtcā€ƒcttctgctacā€ƒgtcccttcggā€ƒccctcaatccā€ƒagcggacctt 5340
ccttcccgcgā€ƒgcctgctgccā€ƒggctctgcggā€ƒcctcttccgcā€ƒgtcttcgcctā€ƒtcgccctcag 5400
acgagtcggaā€ƒtctccctttgā€ƒggccgcctccā€ƒccgcctaagcā€ƒttatcgatacā€ƒcgtcgagatc 5460
taacttgtttā€ƒattgcagcttā€ƒataatggttaā€ƒcaaataaagcā€ƒaatagcatcaā€ƒcaaatttcac 5520
aaataaagcaā€ƒtttttttcacā€ƒtgcattctagā€ƒttgtggtttgā€ƒtccaaactcaā€ƒtcaatgtatc 5580
ttatcatgtcā€ƒtggatctcgaā€ƒcctcgactagā€ƒagcatggctaā€ƒcgtagataagā€ƒtagcatggcg 5640
ggttaatcatā€ƒtaactacaagā€ƒgaacccctagā€ƒtgatggagttā€ƒggccactcccā€ƒtctctgcgcg 5700
ctcgctcgctā€ƒcactgaggccā€ƒgggcgaccaaā€ƒaggtcgcccgā€ƒacgcccgggcā€ƒtttgcccggg 5760
cggcctcagtā€ƒgagcgagcgaā€ƒgcgcgccagcā€ƒtggcgtaataā€ƒgcgaagaggcā€ƒccgcaccgat 5820
cgcccttcccā€ƒaacagttgcgā€ƒcagcctgaatā€ƒggcgaatggaā€ƒattccagacgā€ƒattgagcgtc 5880
aaaatgtaggā€ƒtatttccatgā€ƒagcgtttttcā€ƒctgttgcaatā€ƒggctggcggtā€ƒaatattgttc 5940
tggatattacā€ƒcagcaaggccā€ƒgatagtttgaā€ƒgttcttctacā€ƒtcaggcaagtā€ƒgatgttatta 6000
ctaatcaaagā€ƒaagtattgcgā€ƒacaacggttaā€ƒatttgcgtgaā€ƒtggacagactā€ƒcttttactcg 6060
gtggcctcacā€ƒtgattataaaā€ƒaacacttctcā€ƒaggattctggā€ƒcgtaccgttcā€ƒctgtctaaaa 6120
tccctttaatā€ƒcggcctcctgā€ƒtttagctcccā€ƒgctctgattcā€ƒtaacgaggaaā€ƒagcacgttat 6180
acgtgctcgtā€ƒcaaagcaaccā€ƒatagtacgcgā€ƒccctgtagcgā€ƒgcgcattaagā€ƒcgcggcgggt 6240
gtggtggttaā€ƒcgcgcagcgtā€ƒgaccgctacaā€ƒcttgccagcgā€ƒccctagcgccā€ƒcgctcctttc 6300
gctttcttccā€ƒcttcctttctā€ƒcgccacgttcā€ƒgccggctttcā€ƒcccgtcaagcā€ƒtctaaatcgg 6360
gggctcccttā€ƒtagggttccgā€ƒatttagtgctā€ƒttacggcaccā€ƒtcgaccccaaā€ƒaaaacttgat 6420
tagggtgatgā€ƒgttcacgtagā€ƒtgggccatcgā€ƒccctgatagaā€ƒcggtttttcgā€ƒccctttgacg 6480
ttggagtccaā€ƒcgttctttaaā€ƒtagtggactcā€ƒttgttccaaaā€ƒctggaacaacā€ƒactcaaccct 6540
atctcggtctā€ƒattcttttgaā€ƒtttataagggā€ƒattttgccgaā€ƒtttcggcctaā€ƒttggttaaaa 6600
aatgagctgaā€ƒtttaacaaaaā€ƒatttaacgcgā€ƒaattttaacaā€ƒaaatattaacā€ƒgtttacaatt 6660
taaatatttgā€ƒcttatacaatā€ƒcttcctgtttā€ƒttggggctttā€ƒtctgattatcā€ƒaaccggggta 6720
catatgattgā€ƒacatgctagtā€ƒtttacgattaā€ƒccgttcatcgā€ƒattctcttgtā€ƒttgctccaga 6780
ctctcaggcaā€ƒatgacctgatā€ƒagcctttgtaā€ƒgagacctctcā€ƒaaaaatagctā€ƒaccctctccg 6840
gcatgaatttā€ƒatcagctagaā€ƒacggttgaatā€ƒatcatattgaā€ƒtggtgatttgā€ƒactgtctccg 6900
gcctttctcaā€ƒcccgtttgaaā€ƒtctttacctaā€ƒcacattactcā€ƒaggcattgcaā€ƒtttaaaatat 6960
atgagggttcā€ƒtaaaaattttā€ƒtatccttgcgā€ƒttgaaataaaā€ƒggcttctcccā€ƒgcaaaagtat 7020
tacagggtcaā€ƒtaatgtttttā€ƒggtacaaccgā€ƒatttagctttā€ƒatgctctgagā€ƒgctttattgc 7080
ttaattttgcā€ƒtaattctttgā€ƒccttgcctgtā€ƒatgatttattā€ƒggatgttggaā€ƒattcctgatg 7140
cggtattttcā€ƒtccttacgcaā€ƒtctgtgcggtā€ƒatttcacaccā€ƒgcatatggtgā€ƒcactctcagt 7200
acaatctgctā€ƒctgatgccgcā€ƒatagttaagcā€ƒcagccccgacā€ƒacccgccaacā€ƒacccgctgac 7260
gcgccctgacā€ƒgggcttgtctā€ƒgctcccggcaā€ƒtccgcttacaā€ƒgacaagctgtā€ƒgaccgtctcc 7320
gggagctgcaā€ƒtgtgtcagagā€ƒgttttcaccgā€ƒtcatcaccgaā€ƒaacgcgcgagā€ƒacgaaagggc 7380
ctcgtgatacā€ƒgcctatttttā€ƒataggttaatā€ƒgtcatgataaā€ƒtaatggtttcā€ƒttagacgtca 7440
ggtggcacttā€ƒttcggggaaaā€ƒtgtgcgcggaā€ƒacccctatttā€ƒgtttatttttā€ƒctaaatacat 7500
tcaaatatgtā€ƒatccgctcatā€ƒgagacaataaā€ƒccctgataaaā€ƒtgcttcaataā€ƒatattgaaaa 7560
aggaagagtaā€ƒtgagtattcaā€ƒacatttccgtā€ƒgtcgcccttaā€ƒttccctttttā€ƒtgcggcattt 7620
tgccttcctgā€ƒtttttgctcaā€ƒcccagaaacgā€ƒctggtgaaagā€ƒtaaaagatgcā€ƒtgaagatcag 7680
ttgggtgcacā€ƒgagtgggttaā€ƒcatcgaactgā€ƒgatctcaacaā€ƒgcggtaagatā€ƒccttgagagt 7740
tttcgccccgā€ƒaagaacgtttā€ƒtccaatgatgā€ƒagcacttttaā€ƒaagttctgctā€ƒatgtggcgcg 7800
gtattatcccā€ƒgtattgacgcā€ƒcgggcaagagā€ƒcaactcggtcā€ƒgccgcatacaā€ƒctattctcag 7860
aatgacttggā€ƒttgagtactcā€ƒaccagtcacaā€ƒgaaaagcatcā€ƒttacggatggā€ƒcatgacagta 7920
agagaattatā€ƒgcagtgctgcā€ƒcataaccatgā€ƒagtgataacaā€ƒctgcggccaaā€ƒcttacttctg 7980
acaacgatcgā€ƒgaggaccgaaā€ƒggagctaaccā€ƒgcttttttgcā€ƒacaacatgggā€ƒggatcatgta 8040
actcgccttgā€ƒatcgttgggaā€ƒaccggagctgā€ƒaatgaagccaā€ƒtaccaaacgaā€ƒcgagcgtgac 8100
accacgatgcā€ƒctgtagcaatā€ƒggcaacaacgā€ƒttgcgcaaacā€ƒtattaactggā€ƒcgaactactt 8160
actctagcttā€ƒcccggcaacaā€ƒattaatagacā€ƒtggatggaggā€ƒcggataaagtā€ƒtgcaggacca 8220
cttctgcgctā€ƒcggcccttccā€ƒggctggctggā€ƒtttattgctgā€ƒataaatctggā€ƒagccggtgag 8280
cgtgggtctcā€ƒgcggtatcatā€ƒtgcagcactgā€ƒgggccagatgā€ƒgtaagccctcā€ƒccgtatcgta 8340
gttatctacaā€ƒcgacggggagā€ƒtcaggcaactā€ƒatggatgaacā€ƒgaaatagacaā€ƒgatcgctgag 8400
ataggtgcctā€ƒcactgattaaā€ƒgcattggtaaā€ƒctgtcagaccā€ƒaagtttactcā€ƒatatatactt 8460
tagattgattā€ƒtaaaacttcaā€ƒtttttaatttā€ƒaaaaggatctā€ƒaggtgaagatā€ƒcctttttgat 8520
aatctcatgaā€ƒccaaaatcccā€ƒttaacgtgagā€ƒttttcgttccā€ƒactgagcgtcā€ƒagaccccgta 8580
gaaaagatcaā€ƒaaggatcttcā€ƒttgagatcctā€ƒttttttctgcā€ƒgcgtaatctgā€ƒctgcttgcaa 8640
acaaaaaaacā€ƒcaccgctaccā€ƒagcggtggttā€ƒtgtttgccggā€ƒatcaagagctā€ƒaccaactctt 8700
tttccgaaggā€ƒtaactggcttā€ƒcagcagagcgā€ƒcagataccaaā€ƒatactgtcctā€ƒtctagtgtag 8760
ccgtagttagā€ƒgccaccacttā€ƒcaagaactctā€ƒgtagcaccgcā€ƒctacatacctā€ƒcgctctgcta 8820
atcctgttacā€ƒcagtggctgcā€ƒtgccagtggcā€ƒgataagtcgtā€ƒgtcttaccggā€ƒgttggactca 8880
agacgatagtā€ƒtaccggataaā€ƒggcgcagcggā€ƒtcgggctgaaā€ƒcggggggttcā€ƒgtgcacacag 8940
cccagcttggā€ƒagcgaacgacā€ƒctacaccgaaā€ƒctgagataccā€ƒtacagcgtgaā€ƒgctatgagaa 9000
agcgccacgcā€ƒttcccgaaggā€ƒgagaaaggcgā€ƒgacaggtatcā€ƒcggtaagcggā€ƒcagggtcgga 9060
acaggagagcā€ƒgcacgagggaā€ƒgcttccagggā€ƒggaaacgcctā€ƒggtatctttaā€ƒtagtcctgtc 9120
gggtttcgccā€ƒacctctgactā€ƒtgagcgtcgaā€ƒtttttgtgatā€ƒgctcgtcaggā€ƒggggcggagc 9180
ctatggaaaaā€ƒacgccagcaaā€ƒcgcggcctttā€ƒttacggttccā€ƒtggccttttgā€ƒctggcctttt 9240
gctcacatgtā€ƒtctttcctgcā€ƒgttatcccctā€ƒgattctgtggā€ƒataaccgtatā€ƒtaccgccttt 9300
gagtgagctgā€ƒataccgctcgā€ƒccgcagccgaā€ƒacgaccgagcā€ƒgcagcgagtcā€ƒagtgagcgag 9360
gaagcggaagā€ƒagcgcccaatā€ƒacgcaaaccgā€ƒcctctccccgā€ƒcgcgttggccā€ƒgattcattaa 9420
tg 9422
(nucleotideā€ƒsequenceā€ƒforā€ƒinvertedā€ƒterminalā€ƒrepeatā€ƒ1)
SEQā€ƒIDā€ƒ4
ctgcgcgctcā€ƒgctcgctcacā€ƒtgaggccgccā€ƒcgggcaaagcā€ƒccgggcgtcgā€ƒggcgaccttt 60
ggtcgcccggā€ƒcctcagtgagā€ƒcgagcgagcgā€ƒcgcagagaggā€ƒgagtggccaaā€ƒctccatcact 120
aggggttcct 130
(nucleotideā€ƒsequenceā€ƒforā€ƒinvertedā€ƒterminalā€ƒrepeatā€ƒ2)
SEQā€ƒIDā€ƒ5
aggaacccctā€ƒagtgatggagā€ƒttggccactcā€ƒcctctctgcgā€ƒcgctcgctcgā€ƒctcactgagg 60
ccgggcgaccā€ƒaaaggtcgccā€ƒcgacgcccggā€ƒgctttgcccgā€ƒggcggcctcaā€ƒgtgagcgagc 120
gagcgcgc 128
(nucleotideā€ƒsequenceā€ƒforā€ƒeGFPā€ƒmouse-humanā€ƒoptimized)
SEQā€ƒIDā€ƒ6
cagcagctgcā€ƒgcgctcgctcā€ƒgctcactgagā€ƒgccgcccgggā€ƒcaaagcccggā€ƒgcgtcgggcg 60
acctttggtcā€ƒgcccggcctcā€ƒagtgagcgagā€ƒcgagcgcgcaā€ƒgagagggagtā€ƒggccaactcc 120
atcactagggā€ƒgttccttgtaā€ƒgttaatgattā€ƒaacccgccatā€ƒgctacttatcā€ƒtacgtagcca 180
tgctctaggaā€ƒcattgattatā€ƒtgactagtggā€ƒagttccgcgtā€ƒtacataacttā€ƒacggtaaatg 240
gcccgcctggā€ƒctgaccgcccā€ƒaacgacccccā€ƒgcccattgacā€ƒgtcaataatgā€ƒacgtatgttc 300
ccatagtaacā€ƒgccaatagggā€ƒactttccattā€ƒgacgtcaatgā€ƒggtggagtatā€ƒttacggtaaa 360
ctgcccacttā€ƒggcagtacatā€ƒcaagtgtatcā€ƒatatgccaagā€ƒtacgccccctā€ƒattgacgtca 420
atgacggtaaā€ƒatggcccgccā€ƒtggcattatgā€ƒcccagtacatā€ƒgaccttatggā€ƒgactttccta 480
cttggcagtaā€ƒcatctacgtaā€ƒttagtcatcgā€ƒctattaccatā€ƒggtcgaggtgā€ƒagccccacgt 540
tctgcttcacā€ƒtctccccatcā€ƒtcccccccctā€ƒccccacccccā€ƒaattttgtatā€ƒttatttattt 600
tttaattattā€ƒttgtgcagcgā€ƒatgggggcggā€ƒggggggggggā€ƒgggcgcgcgcā€ƒcaggcggggc 660
ggggcggggcā€ƒgaggggcgggā€ƒgcggggcgagā€ƒgcggagaggtā€ƒgcggcggcagā€ƒccaatcagag 720
cggcgcgctcā€ƒcgaaagtttcā€ƒcttttatggcā€ƒgaggcggcggā€ƒcggcggcggcā€ƒcctataaaaa 780
gcgaagcgcgā€ƒcggcgggcggā€ƒgagtcgctgcā€ƒgcgctgccttā€ƒcgccccgtgcā€ƒcccgctccgc 840
cgccgcctcgā€ƒcgccgcccgcā€ƒcccggctctgā€ƒactgaccgcgā€ƒttactaaaacā€ƒaggtaagtcc 900
ggcctccgcgā€ƒccgggttttgā€ƒgcgcctcccgā€ƒcgggcgccccā€ƒcctcctcacgā€ƒgcgagcgctg 960
ccacgtcagaā€ƒcgaagggcgcā€ƒagcgagcgtcā€ƒctgatccttcā€ƒcgcccggacgā€ƒctcaggacag 1020
cggcccgctgā€ƒctcataagacā€ƒtcggccttagā€ƒaaccccagtaā€ƒtcagcagaagā€ƒgacattttag 1080
gacgggacttā€ƒgggtgactctā€ƒagggcactggā€ƒttttctttccā€ƒagagagcggaā€ƒacaggcgagg 1140
aaaagtagtcā€ƒccttctcggcā€ƒgattctgcggā€ƒagggatctccā€ƒgtggggcggtā€ƒgaacgccgat 1200
gatgcctctaā€ƒctaaccatgtā€ƒtcatgttttcā€ƒtttttttttcā€ƒtacaggtcctā€ƒgggtgacgaa 1260
cagggtaccgā€ƒccaccatggtā€ƒgtccaagggaā€ƒgaggagctgtā€ƒtcaccggagtā€ƒggtgcccatc 1320
ctggtggagcā€ƒtggacggcgaā€ƒtgtgaatggcā€ƒcacaagtttaā€ƒgcgtgtccggā€ƒagagggagag 1380
ggcgacgcaaā€ƒcctacggcaaā€ƒgctgacactgā€ƒaagttcatctā€ƒgcaccacaggā€ƒcaagctgccc 1440
gtgccttggcā€ƒcaaccctggtā€ƒgaccacactgā€ƒacatacggcgā€ƒtgcagtgtttā€ƒttctcggtat 1500
ccagaccacaā€ƒtgaagcagcaā€ƒcgatttctttā€ƒaagagcgccaā€ƒtgcccgagggā€ƒctacgtgcag 1560
gagaggacaaā€ƒtcttctttaaā€ƒggacgatggcā€ƒaactataagaā€ƒccagagccgaā€ƒggtgaagttc 1620
gagggcgacaā€ƒcactggtgaaā€ƒccggatcgagā€ƒctgaagggcaā€ƒtcgactttaaā€ƒggaggatggc 1680
aatatcctggā€ƒgccacaagctā€ƒggagtacaacā€ƒtataattcccā€ƒacaacgtgtaā€ƒcatcatggcc 1740
gataagcagaā€ƒagaacggcatā€ƒcaaggtgaacā€ƒttcaagatccā€ƒgccacaatatā€ƒcgaggacggc 1800
tctgtgcagcā€ƒtggccgatcaā€ƒctaccagcagā€ƒaacacccctaā€ƒtcggcgacggā€ƒacccgtgctg 1860
ctgcctgataā€ƒatcactatctā€ƒgtctacacagā€ƒagcgccctgtā€ƒccaaggacccā€ƒaaacgagaag 1920
agggatcacaā€ƒtggtgctgctā€ƒggagttcgtgā€ƒaccgcagcagā€ƒgcatcacactā€ƒgggcatggat 1980
gagctgtataā€ƒag 1992
(nucleicā€ƒacidā€ƒsequenceā€ƒforā€ƒHAā€ƒtag)
SEQā€ƒIDā€ƒ7
tacccctatgā€ƒacgtgcctgaā€ƒttatgcc 27

Example 1—Expression Cassette

Expression cassettes for expressing a precursor protein were synthesized by Genscript. Each cassette contained a signal peptide, the precursor protein that may be followed by a self-cleaving 2A peptide sequence, a signal peptide and the human lambda constant domain. The synthesized precursor protein expression cassettes were cloned into the pAVA-00200 plasmid backbone containing the CASI promoter1, multiple cloning site (MCS), Woodchuck Hepatitis Virus post-transcriptional regulatory element (WPRE), Simian virus 40 (SV40) polyadenylation (polyA) sequence all flanked by the AAV2 inverted terminal repeats (ITR). pAVA-00200 was cut with the restriction enzymes KpnI and XbaI in the MCS and separated on a 1% agarose gel. The band of interest was excised and purified using a gel extraction kit. Each precursor protein expression cassette was amplified by PCR using Taq polymerase and the PCR products were gel purified and the bands on interest were also excised and purified using a gel extraction kit. These PCR products contained the precursor protein expression cassettes in addition to 15 base pair 5′ and 3′ overhangs that align with the ends of the linearized pAVA-00200 backbone. Using in-fusion cloning2, the amplified precursor protein or expression cassettes are integrated with the pAVA-00200 backbone via homologous recombination. The resulting plasmid vectors contained the following 5′ ITR, CASI promoter the precursor protein expression cassette, WPRE, SV40 polyA and ITR 3′, per SEQ ID No. 3.

Example 2—Experimental Data

Table 1 below summarizes data obtained from HEK293 cells that were administered an AAV vector of SEQ ID No. 3 and TLR3 protein levels were compared against control HEK293 cells that did not receive the AAV vector of SEQ ID No. 3 (control). Speicifically, about 2.5Ɨ106 HEK293 confluent cells were administered about 1Ɨ108 AAV vectors of SEQ ID No. 3. About 48 hours later, expression levels of human TLR3 mRNA were determined by qRT-PCR, and converted to expressed TLR3 protein levels.

TABLE 1
TLR3 Protein Levels
Molecule Control (ag) AAV recipient (ag) P-value
TLR3 1 23 0.0076
n.b. ag = attogram 1 Ɨ 10āˆ’18 grams

As shown in Table 1, cells that received the AAV of SEQ ID No. 3 that include SEQ ID No. 1 that encoded for increased production of a TLR3 precursor protein demonstrated statistically significant higher amounts of TLR3 than the control cells that did not receive the AAV. Without being bound by any particular theory, the cells that were administered the AAV had higher levels of TLR3 than cells that did not receive the AAV.

Claims

The invention claimed is:

1. A recombinant virus vector (RVV), the RVV comprising:

a. a nucleotide sequence encoding a toll-like receptor 3 (TLR3) precursor protein; and

b. an inverted terminal repeat.

2. The RVV of claim 1, wherein the nucleotide sequence encoding the TLR3 precursor protein is SEQ ID No. 1.

3. The RVV of claim 1, wherein the precursor protein has an amino acid sequence of SEQ ID No. 2.

4. The RVV of claim 1, wherein the inverted terminal repeat is SEQ ID No. 4 or SEQ ID No. 5.

5. The RVV of claim 1, wherein the inverted terminal repeat is a first inverted terminal repeat of SEQ ID No. 4 and a second inverted terminal repeat of SEQ ID No. 5 and, wherein the nucleotide sequence encoding a toll-like receptor 3 (TLR3) precursor protein is positioned between the first inverted terminal repeat and the second inverted terminal repeat.

6. The RVV of claim 1, wherein the RVV is an adeno-associated virus.

7. A composition that comprises a nucleotide sequence according to SEQ ID No. 1 that can be expressed in a target cell.

8. A pharmaceutical composition comprising the composition of claim 7 and one or more pharmaceutically acceptable carriers and/or one or more excipients.

9. An insert for use with a recombinant virus vector (RVV), wherein the insert has a nucleotide sequence according to SEQ ID No. 1.

10. A method of making an agent/target cell complex, the method comprising a step of administering a recombinant virus vector (RVV) to a target cell for forming the agent/target cell complex, wherein the agent/target cell complex causes the target cell to increase production of a TLR3 precursor protein.

11. The method of claim 10, wherein the RVV comprises a nucleotide sequence according to SEQ ID No. 3 for increasing the target cell's production of the TLR3 precursor protein.

12. The method of claim 10, wherein the RVV comprises a nucleotide sequence according to SEQ ID No. 1 for increasing the target cell's production of the TLR3 precursor protein.

13. The method of claim 10, wherein the TLR3 precursor protein has an amino acid sequence of SEQ ID No. 2.

14. The method of claim 10, wherein the TLR3 precursor protein is subjected to one or more post-translation modification processes within the target cell to produce a TLR3 protein product.

15. The method of claim 10, wherein the target cell is one or more of an innate immune cell, an acquired immune cell, an adrenal gland cell; a bile duct cell; a chondrocyte; a cochlear cell; a corneal cell; an endocardium cell; an endometrial cell; an endothelial cell; an epithelial cell; a fibroblast; a hair follicle cell; a hepatocyte; a lymph node cell; a mucosal cell; a myocyte; a neuron; a glomeruli cell; an optic nerve cell; an osteoblast; an ovarian tissue cell; a pancreatic islet beta cell; a pericardium cell; a platelet; a red blood cell (RBC); a retinal cell; a scleral cell; a Schwann cell; a T cell; a testicular tissue cell; a thyroid gland cell; a uveal cell; a tumor cell, and combinations thereof.